RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 ARFGAP2Q8N6H7 521 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 EXOC6Q8TAG9 804 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 PRPF31Q8WWY3 499 aaKnown RBP10.13□□□□□ -0.79
LIG3-202ENST00000378526 PFDN1O60925 122 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 CIB2O75838 187 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 NBPF8Q3BBV2 869 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 EIF2AQ9BY44 585 aaKnown RBP10.13□□□□□ -0.79
LIG3-202ENST00000378526 THEGQ9P2T0 379 aa10.13□□□□□ -0.79
LIG3-202ENST00000378526 PPFIA3O75145 1194 aa10.12□□□□□ -0.79
LIG3-202ENST00000378526 CFAP58Q5T655 872 aa10.12□□□□□ -0.79
LIG3-202ENST00000378526 PPP1R9BQ96SB3 815 aa10.12□□□□□ -0.79
LIG3-202ENST00000378526 TANGO6Q9C0B7 1094 aa10.12□□□□□ -0.79
LIG3-202ENST00000378526 PLEKHH1Q9ULM0 1364 aa10.12□□□□□ -0.79
LIG3-202ENST00000378526 TTC36A6NLP5 189 aa10.12□□□□□ -0.79
LIG3-202ENST00000378526 C16orf45Q96MC5 204 aaPredicted RBP10.12□□□□□ -0.79
LIG3-202ENST00000378526 PIP4K2BP78356 416 aa10.12□□□□□ -0.79
LIG3-202ENST00000378526 IFI16Q16666 785 aaKnown RBP10.12□□□□□ -0.79
LIG3-202ENST00000378526 DCAF11Q8TEB1 546 aa10.12□□□□□ -0.79
LIG3-202ENST00000378526 SAMD15Q9P1V8 674 aa10.12□□□□□ -0.79
LIG3-202ENST00000378526 KRT18P05783 430 aaKnown RBP10.12□□□□□ -0.79
LIG3-202ENST00000378526 IRX4P78413 519 aa10.12□□□□□ -0.79
LIG3-202ENST00000378526 CCDC150Q8NCX0 1101 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 DRC1Q96MC2 740 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 ANO10Q9NW15 660 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 CCDC92Q53HC0 331 aaPredicted RBP10.11□□□□□ -0.79
LIG3-202ENST00000378526 LRRC45Q96CN5 670 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 CLIP2Q9UDT6 1046 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 CTNNBL1Q8WYA6 563 aaPredicted RBP10.11□□□□□ -0.79
LIG3-202ENST00000378526 UIMC1Q96RL1 719 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 TOP1P11387 765 aaKnown RBP10.11□□□□□ -0.79
LIG3-202ENST00000378526 GBP5Q96PP8 586 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 ZBTB16Q05516 673 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 NUF2Q9BZD4 464 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 HS1BP3Q53T59 392 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 ATRIPQ8WXE1 791 aa10.11□□□□□ -0.79
LIG3-202ENST00000378526 TRIM4Q9C037 500 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 ATAD2Q6PL18 1390 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 TAF7Q15545 349 aaPredicted RBP10.1□□□□□ -0.79
LIG3-202ENST00000378526 LARP1Q6PKG0 1096 aaKnown RBP10.1□□□□□ -0.79
LIG3-202ENST00000378526 CCDC129Q6ZRS4 1044 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 PLVAPQ9BX97 442 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 RUFY3Q7L099 469 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 FERMT1Q9BQL6 677 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 XPCQ01831 940 aaPredicted RBP10.1□□□□□ -0.79
LIG3-202ENST00000378526 FKBP15Q5T1M5 1219 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 KRBA2Q6ZNG9 492 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 API5Q9BZZ5 524 aaKnown RBP10.1□□□□□ -0.79
LIG3-202ENST00000378526 IQCGQ9H095 443 aaKnown RBP10.1□□□□□ -0.79
LIG3-202ENST00000378526 KIF5AQ12840 1032 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 VCX3AQ9NNX9 186 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 UVSSAQ2YD98 709 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 ARHGAP24Q8N264 748 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 SPATA32Q96LK8 384 aa10.1□□□□□ -0.79
LIG3-202ENST00000378526 CDKL5O76039 1030 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 LRRC23Q53EV4 343 aaPredicted RBP10.09□□□□□ -0.79
LIG3-202ENST00000378526 PLPPR3Q6T4P5 718 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 CPLX4Q7Z7G2 160 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 POLE3Q9NRF9 147 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 BMP2KQ9NSY1 1161 aaPredicted RBP10.09□□□□□ -0.79
LIG3-202ENST00000378526 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.09□□□□□ -0.79
LIG3-202ENST00000378526 KAT6BQ8WYB5 2073 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 ALDH3A1P30838 453 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 ERCC6LQ2NKX8 1250 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 ZFP91Q96JP5 570 aaPredicted RBP10.09□□□□□ -0.79
LIG3-202ENST00000378526 LARSQ9P2J5 1176 aaKnown RBP10.09□□□□□ -0.79
LIG3-202ENST00000378526 RASAL2Q9UJF2 1139 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 CEP131Q9UPN4 1083 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 C9orf78Q9NZ63 289 aaPredicted RBP10.09□□□□□ -0.79
LIG3-202ENST00000378526 CCDC172P0C7W6 258 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 SIN3AQ96ST3 1273 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 TRPC3Q13507 836 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 SYCE3A1L190 88 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 INPP5BP32019 993 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 SLC8A1P32418 973 aa10.09□□□□□ -0.79
LIG3-202ENST00000378526 TERF2IPQ9NYB0 399 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 NEK4P51957 841 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 FAM76AQ8TAV0 307 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 CEP164Q9UPV0 1460 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 PRC1O43663 620 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 YEATS4O95619 227 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 CCDC77Q9BR77 488 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 SLC3A2P08195 630 aaKnown RBP10.08□□□□□ -0.8
LIG3-202ENST00000378526 CNGA1P29973 690 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 G3BP1Q13283 466 aaKnown RBP eCLIP10.08□□□□□ -0.82e-8■■■□□ 16.8
LIG3-202ENST00000378526 FLIIQ13045 1269 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 SLC4A8Q2Y0W8 1093 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 HSP90AA5PQ58FG0 334 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 WDR78Q5VTH9 848 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 HDXQ7Z353 690 aa10.08□□□□□ -0.8
LIG3-202ENST00000378526 RNF10Q8N5U6 811 aaKnown RBP10.08□□□□□ -0.8
LIG3-202ENST00000378526 TRIM22Q8IYM9 498 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 GOLGA1Q92805 767 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 BICDL2A1A5D9 508 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 ATP5DP30049 168 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 SPATS2Q86XZ4 545 aaKnown RBP10.07□□□□□ -0.8
LIG3-202ENST00000378526 NEDD9Q14511 834 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 CAPZA3Q96KX2 299 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 PPP1R12CQ9BZL4 782 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 SERPINA10Q9UK55 444 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 NOL7Q9UMY1 257 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms