RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 PLSCR1O15162 318 aa15.43■□□□□ 0.06
DEPDC4-202ENST00000378244 PTCD1O75127 700 aaKnown RBP15.43■□□□□ 0.06
DEPDC4-202ENST00000378244 TXNRD1Q16881 649 aa15.43■□□□□ 0.06
DEPDC4-202ENST00000378244 PROM2Q8N271 834 aa15.43■□□□□ 0.06
DEPDC4-202ENST00000378244 NHSQ6T4R5 1651 aa15.43■□□□□ 0.06
DEPDC4-202ENST00000378244 MIS18AQ9NYP9 233 aa15.43■□□□□ 0.06
DEPDC4-202ENST00000378244 RBM42Q9BTD8 480 aaKnown RBP15.42■□□□□ 0.06
DEPDC4-202ENST00000378244 ATG3Q9NT62 314 aa15.42■□□□□ 0.06
DEPDC4-202ENST00000378244 TNS1Q9HBL0 1735 aaKnown RBP15.42■□□□□ 0.06
DEPDC4-202ENST00000378244 BTAF1O14981 1849 aa15.41■□□□□ 0.06
DEPDC4-202ENST00000378244 PALLDQ8WX93 1383 aa15.41■□□□□ 0.06
DEPDC4-202ENST00000378244 LRRC4BQ9NT99 713 aa15.4■□□□□ 0.06
DEPDC4-202ENST00000378244 TRIM35Q9UPQ4 493 aa15.4■□□□□ 0.06
DEPDC4-202ENST00000378244 CEMIPQ8WUJ3 1361 aa15.4■□□□□ 0.06
DEPDC4-202ENST00000378244 HTATSF1O43719 755 aaKnown RBP15.4■□□□□ 0.06
DEPDC4-202ENST00000378244 CCNL1Q9UK58 526 aaPredicted RBP15.4■□□□□ 0.06
DEPDC4-202ENST00000378244 ITGB4P16144 1822 aa15.4■□□□□ 0.06
DEPDC4-202ENST00000378244 BTBD11A6QL63 1104 aa15.39■□□□□ 0.05
DEPDC4-202ENST00000378244 LAS1LQ9Y4W2 734 aaKnown RBP15.39■□□□□ 0.05
DEPDC4-202ENST00000378244 KCNQ3O43525 872 aa15.38■□□□□ 0.05
DEPDC4-202ENST00000378244 SMARCC1Q92922 1105 aaPredicted RBP15.38■□□□□ 0.05
DEPDC4-202ENST00000378244 SCN11AQ9UI33 1791 aa15.38■□□□□ 0.05
DEPDC4-202ENST00000378244 LOC102724428A0A0B4J2F2 783 aa15.38■□□□□ 0.05
DEPDC4-202ENST00000378244 SIK1P57059 783 aa15.38■□□□□ 0.05
DEPDC4-202ENST00000378244 LMOD3Q0VAK6 560 aa15.38■□□□□ 0.05
DEPDC4-202ENST00000378244 TTC5Q8N0Z6 440 aa15.38■□□□□ 0.05
DEPDC4-202ENST00000378244 ATP6V1AP38606 617 aa15.37■□□□□ 0.05
DEPDC4-202ENST00000378244 TAF7Q15545 349 aaPredicted RBP15.37■□□□□ 0.05
DEPDC4-202ENST00000378244 DLG5Q8TDM6 1919 aa15.37■□□□□ 0.05
DEPDC4-202ENST00000378244 ZNF790Q6PG37 636 aa15.37■□□□□ 0.05
DEPDC4-202ENST00000378244 SLC4A9Q96Q91 983 aa15.36■□□□□ 0.05
DEPDC4-202ENST00000378244 ZNF496Q96IT1 587 aaPredicted RBP15.35■□□□□ 0.05
DEPDC4-202ENST00000378244 ANO8Q9HCE9 1232 aaPredicted RBP15.34■□□□□ 0.05
DEPDC4-202ENST00000378244 MRC1P22897 1456 aa15.34■□□□□ 0.05
DEPDC4-202ENST00000378244 PSDA5PKW4 1024 aaPredicted RBP15.34■□□□□ 0.05
DEPDC4-202ENST00000378244 ITPK1Q13572 414 aa15.34■□□□□ 0.05
DEPDC4-202ENST00000378244 SLC27A3Q5K4L6 730 aa15.34■□□□□ 0.05
DEPDC4-202ENST00000378244 WWC1Q8IX03 1113 aa15.34■□□□□ 0.05
DEPDC4-202ENST00000378244 TSPYL4Q9UJ04 414 aa15.33■□□□□ 0.05
DEPDC4-202ENST00000378244 ADAMTS7Q9UKP4 1686 aa15.33■□□□□ 0.04
DEPDC4-202ENST00000378244 VIRMAQ69YN4 1812 aaKnown RBP15.33■□□□□ 0.04
DEPDC4-202ENST00000378244 R3HDM1Q15032 1099 aaKnown RBP15.33■□□□□ 0.04
DEPDC4-202ENST00000378244 NBPF14Q5TI25 921 aa15.32■□□□□ 0.04
DEPDC4-202ENST00000378244 SMIM5Q71RC9 77 aa15.32■□□□□ 0.04
DEPDC4-202ENST00000378244 PRAMEF22A3QJZ6 481 aa15.31■□□□□ 0.04
DEPDC4-202ENST00000378244 ZNF827Q17R98 1081 aa15.31■□□□□ 0.04
DEPDC4-202ENST00000378244 DNAJC10Q8IXB1 793 aa15.31■□□□□ 0.04
DEPDC4-202ENST00000378244 LINC00116Q8NCU8 138 aa15.31■□□□□ 0.04
DEPDC4-202ENST00000378244 FMNL2Q96PY5 1086 aa15.31■□□□□ 0.04
DEPDC4-202ENST00000378244 TFCP2L1Q9NZI6 479 aa15.3■□□□□ 0.04
DEPDC4-202ENST00000378244 STK32BQ9NY57 414 aa15.29■□□□□ 0.04
DEPDC4-202ENST00000378244 SLC15A2Q16348 729 aa15.29■□□□□ 0.04
DEPDC4-202ENST00000378244 KRT24Q2M2I5 525 aa15.29■□□□□ 0.04
DEPDC4-202ENST00000378244 CCDC27Q2M243 656 aa15.28■□□□□ 0.04
DEPDC4-202ENST00000378244 TSR2Q969E8 191 aaKnown RBP15.28■□□□□ 0.04
DEPDC4-202ENST00000378244 CFAP44Q96MT7 982 aa15.28■□□□□ 0.04
DEPDC4-202ENST00000378244 PDGFDQ9GZP0 370 aaPredicted RBP15.28■□□□□ 0.04
DEPDC4-202ENST00000378244 CHL1O00533 1208 aa15.28■□□□□ 0.04
DEPDC4-202ENST00000378244 PHF14O94880 888 aa15.28■□□□□ 0.04
DEPDC4-202ENST00000378244 HNRNPUQ00839 825 aaKnown RBP eCLIP15.28■□□□□ 0.04
DEPDC4-202ENST00000378244 AK7Q96M32 723 aa15.28■□□□□ 0.04
DEPDC4-202ENST00000378244 MBIPQ9NS73 344 aa15.28■□□□□ 0.04
DEPDC4-202ENST00000378244 LY75O60449 1722 aa15.28■□□□□ 0.04
DEPDC4-202ENST00000378244 GNPATO15228 680 aa15.27■□□□□ 0.04
DEPDC4-202ENST00000378244 EIF4A1P60842 406 aaKnown RBP15.27■□□□□ 0.04
DEPDC4-202ENST00000378244 CALD1Q05682 793 aaKnown RBP15.27■□□□□ 0.04
DEPDC4-202ENST00000378244 USP16Q9Y5T5 823 aa15.27■□□□□ 0.04
DEPDC4-202ENST00000378244 KCPQ6ZWJ8 1503 aa15.27■□□□□ 0.04
DEPDC4-202ENST00000378244 HEG1Q9ULI3 1381 aa15.27■□□□□ 0.04
DEPDC4-202ENST00000378244 ELL2O00472 640 aaPredicted RBP15.27■□□□□ 0.03
DEPDC4-202ENST00000378244 PIP4K2AP48426 406 aaPredicted RBP15.27■□□□□ 0.03
DEPDC4-202ENST00000378244 AMIGO3Q86WK7 504 aa15.27■□□□□ 0.03
DEPDC4-202ENST00000378244 DAXXQ9UER7 740 aaPredicted RBP15.27■□□□□ 0.03
DEPDC4-202ENST00000378244 SIPA1L3O60292 1781 aaPredicted RBP15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 MSH5O43196 834 aa15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 CRKLP46109 303 aaKnown RBP15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 GNAI1P63096 354 aa15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 AKT1S1Q96B36 256 aa15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 SPINK5Q9NQ38 1064 aaPredicted RBP15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 RTN4Q9NQC3 1192 aaKnown RBP15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 ZNF330Q9Y3S2 320 aaPredicted RBP15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 RREB1Q92766 1687 aa15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 NUP188Q5SRE5 1749 aa15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 SNRPA1P09661 255 aaKnown RBP15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 IFT57Q9NWB7 429 aa15.26■□□□□ 0.03
DEPDC4-202ENST00000378244 RGPD3A6NKT7 1758 aaPredicted RBP15.25■□□□□ 0.03
DEPDC4-202ENST00000378244 RGPD4Q7Z3J3 1758 aa15.25■□□□□ 0.03
DEPDC4-202ENST00000378244 CYP19A1P11511 503 aaPredicted RBP15.25■□□□□ 0.03
DEPDC4-202ENST00000378244 VSIG10Q8N0Z9 540 aa15.25■□□□□ 0.03
DEPDC4-202ENST00000378244 NECTIN2Q92692 538 aa15.25■□□□□ 0.03
DEPDC4-202ENST00000378244 CANXP27824 592 aaKnown RBP15.25■□□□□ 0.03
DEPDC4-202ENST00000378244 GIGYF1O75420 1035 aaPredicted RBP15.24■□□□□ 0.03
DEPDC4-202ENST00000378244 STARD3NLO95772 234 aa15.24■□□□□ 0.03
DEPDC4-202ENST00000378244 A1BGP04217 495 aa15.24■□□□□ 0.03
DEPDC4-202ENST00000378244 ZNF853P0CG23 659 aa15.24■□□□□ 0.03
DEPDC4-202ENST00000378244 EIF2S2P20042 333 aaKnown RBP15.24■□□□□ 0.03
DEPDC4-202ENST00000378244 PAPPAQ13219 1627 aa15.24■□□□□ 0.03
DEPDC4-202ENST00000378244 ZBTB1Q9Y2K1 713 aa15.23■□□□□ 0.03
DEPDC4-202ENST00000378244 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.23■□□□□ 0.03
DEPDC4-202ENST00000378244 WDR63Q8IWG1 891 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms