RNA–Protein interactions for RNA: ENST00000374490.7

HMGCL-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCL, Length 1,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-203ENST00000374490 DCTN1Q14203 1278 aa17.36■□□□□ 0.37
HMGCL-203ENST00000374490 SIRT2Q8IXJ6 389 aa17.36■□□□□ 0.37
HMGCL-203ENST00000374490 RPAP2Q8IXW5 612 aaPredicted RBP17.36■□□□□ 0.37
HMGCL-203ENST00000374490 TRPM3Q9HCF6 1732 aaPredicted RBP17.35■□□□□ 0.37
HMGCL-203ENST00000374490 C1orf115Q9H7X2 142 aa17.35■□□□□ 0.37
HMGCL-203ENST00000374490 KDRP35968 1356 aa17.34■□□□□ 0.37
HMGCL-203ENST00000374490 LTN1O94822 1766 aa17.34■□□□□ 0.37
HMGCL-203ENST00000374490 HTATSF1O43719 755 aaKnown RBP17.34■□□□□ 0.37
HMGCL-203ENST00000374490 HSP90AB2PQ58FF8 381 aa17.34■□□□□ 0.37
HMGCL-203ENST00000374490 ANKRD44Q8N8A2 993 aa17.34■□□□□ 0.37
HMGCL-203ENST00000374490 GAS2L2Q8NHY3 880 aa17.34■□□□□ 0.37
HMGCL-203ENST00000374490 DCTPP1Q9H773 170 aa17.34■□□□□ 0.37
HMGCL-203ENST00000374490 CDC45O75419 566 aa17.33■□□□□ 0.37
HMGCL-203ENST00000374490 RTF1Q92541 710 aaKnown RBP17.33■□□□□ 0.37
HMGCL-203ENST00000374490 CIZ1Q9ULV3 898 aaPredicted RBP17.32■□□□□ 0.36
HMGCL-203ENST00000374490 RTL1A6NKG5 1358 aa17.32■□□□□ 0.36
HMGCL-203ENST00000374490 SOS1Q07889 1333 aaPredicted RBP17.32■□□□□ 0.36
HMGCL-203ENST00000374490 TNS3Q68CZ2 1445 aa17.32■□□□□ 0.36
HMGCL-203ENST00000374490 SLIT2O94813 1529 aa17.32■□□□□ 0.36
HMGCL-203ENST00000374490 LMOD2Q6P5Q4 547 aa17.32■□□□□ 0.36
HMGCL-203ENST00000374490 KCNH5Q8NCM2 988 aa17.32■□□□□ 0.36
HMGCL-203ENST00000374490 IGSF1Q8N6C5 1336 aa17.31■□□□□ 0.36
HMGCL-203ENST00000374490 ATP10DQ9P241 1426 aa17.31■□□□□ 0.36
HMGCL-203ENST00000374490 NFAT5O94916 1531 aa17.31■□□□□ 0.36
HMGCL-203ENST00000374490 MCM10Q7L590 875 aa17.31■□□□□ 0.36
HMGCL-203ENST00000374490 L1TD1Q5T7N2 865 aaKnown RBP17.3■□□□□ 0.36
HMGCL-203ENST00000374490 HMMRO75330 724 aa17.29■□□□□ 0.36
HMGCL-203ENST00000374490 PLEKHG5O94827 1062 aa17.29■□□□□ 0.36
HMGCL-203ENST00000374490 MCM4P33991 863 aa17.29■□□□□ 0.36
HMGCL-203ENST00000374490 TBC1D9Q6ZT07 1266 aa17.29■□□□□ 0.36
HMGCL-203ENST00000374490 SLIT3O75094 1523 aa17.29■□□□□ 0.36
HMGCL-203ENST00000374490 HOXC9P31274 260 aa17.29■□□□□ 0.36
HMGCL-203ENST00000374490 CCT4P50991 539 aaKnown RBP17.29■□□□□ 0.36
HMGCL-203ENST00000374490 CCDC9Q9Y3X0 531 aaKnown RBP17.29■□□□□ 0.36
HMGCL-203ENST00000374490 ALS2Q96Q42 1657 aa17.28■□□□□ 0.36
HMGCL-203ENST00000374490 VPS72Q15906 364 aa17.28■□□□□ 0.36
HMGCL-203ENST00000374490 CEP85Q6P2H3 762 aa17.28■□□□□ 0.36
HMGCL-203ENST00000374490 CABLES1Q8TDN4 633 aa17.28■□□□□ 0.36
HMGCL-203ENST00000374490 BABAM1Q9NWV8 329 aa17.28■□□□□ 0.36
HMGCL-203ENST00000374490 TSPYL4Q9UJ04 414 aa17.28■□□□□ 0.36
HMGCL-203ENST00000374490 LRRC37A3O60309 1634 aa17.27■□□□□ 0.36
HMGCL-203ENST00000374490 PHRF1Q9P1Y6 1649 aaKnown RBP17.27■□□□□ 0.36
HMGCL-203ENST00000374490 DDX11L8A8MPP1 907 aa17.27■□□□□ 0.36
HMGCL-203ENST00000374490 PTMSP20962 102 aa17.27■□□□□ 0.36
HMGCL-203ENST00000374490 MTHFSDQ2M296 383 aaKnown RBP17.27■□□□□ 0.36
HMGCL-203ENST00000374490 TTC22Q5TAA0 569 aa17.27■□□□□ 0.36
HMGCL-203ENST00000374490 PLEKHM2Q8IWE5 1019 aa17.27■□□□□ 0.36
HMGCL-203ENST00000374490 HSP90AB1P08238 724 aaKnown RBP17.26■□□□□ 0.35
HMGCL-203ENST00000374490 DDIT3P35638 169 aa17.26■□□□□ 0.35
HMGCL-203ENST00000374490 SF3B2Q13435 895 aaKnown RBP17.26■□□□□ 0.35
HMGCL-203ENST00000374490 SEPT12Q8IYM1 358 aa17.26■□□□□ 0.35
HMGCL-203ENST00000374490 SLC4A2P04920 1241 aa17.25■□□□□ 0.35
HMGCL-203ENST00000374490 CASC1Q6TDU7 716 aa17.25■□□□□ 0.35
HMGCL-203ENST00000374490 EYA1Q99502 592 aa17.25■□□□□ 0.35
HMGCL-203ENST00000374490 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.24■□□□□ 0.35
HMGCL-203ENST00000374490 GLI3P10071 1580 aa17.24■□□□□ 0.35
HMGCL-203ENST00000374490 ZBTB7CA1YPR0 619 aa17.24■□□□□ 0.35
HMGCL-203ENST00000374490 KRT24Q2M2I5 525 aa17.24■□□□□ 0.35
HMGCL-203ENST00000374490 STK31Q9BXU1 1019 aa17.24■□□□□ 0.35
HMGCL-203ENST00000374490 GCP02774 474 aa17.23■□□□□ 0.35
HMGCL-203ENST00000374490 GSPT1P15170 499 aaKnown RBP17.23■□□□□ 0.35
HMGCL-203ENST00000374490 IP6K1Q92551 441 aa17.23■□□□□ 0.35
HMGCL-203ENST00000374490 KIF2CQ99661 725 aa17.23■□□□□ 0.35
HMGCL-203ENST00000374490 A0A0G2JS52 829 aa17.22■□□□□ 0.35
HMGCL-203ENST00000374490 K7ELQ4 463 aaPredicted RBP17.22■□□□□ 0.35
HMGCL-203ENST00000374490 SPRYD3Q8NCJ5 442 aa17.22■□□□□ 0.35
HMGCL-203ENST00000374490 RABEP1Q15276 862 aa17.21■□□□□ 0.35
HMGCL-203ENST00000374490 CCDC30Q5VVM6 783 aa17.21■□□□□ 0.35
HMGCL-203ENST00000374490 KRT27Q7Z3Y8 459 aa17.21■□□□□ 0.35
HMGCL-203ENST00000374490 IL27Q8NEV9 243 aa17.21■□□□□ 0.35
HMGCL-203ENST00000374490 LTV1Q96GA3 475 aaPredicted RBP17.21■□□□□ 0.35
HMGCL-203ENST00000374490 GBP4Q96PP9 640 aa17.21■□□□□ 0.35
HMGCL-203ENST00000374490 GNAT3A8MTJ3 354 aa17.21■□□□□ 0.35
HMGCL-203ENST00000374490 ONECUT3O60422 494 aaPredicted RBP17.21■□□□□ 0.35
HMGCL-203ENST00000374490 MAP3K5Q99683 1374 aa17.21■□□□□ 0.35
HMGCL-203ENST00000374490 MEIS3Q99687 375 aa17.21■□□□□ 0.35
HMGCL-203ENST00000374490 PXDNLA1KZ92 1463 aa17.2■□□□□ 0.34
HMGCL-203ENST00000374490 BRPF3Q9ULD4 1205 aa17.2■□□□□ 0.34
HMGCL-203ENST00000374490 ISY1Q9ULR0 285 aaKnown RBP17.2■□□□□ 0.34
HMGCL-203ENST00000374490 GNAI3P08754 354 aa17.19■□□□□ 0.34
HMGCL-203ENST00000374490 DEFB132Q7Z7B7 95 aa17.19■□□□□ 0.34
HMGCL-203ENST00000374490 CHMP4AQ9BY43 222 aa17.19■□□□□ 0.34
HMGCL-203ENST00000374490 GNAI2P04899 355 aa17.18■□□□□ 0.34
HMGCL-203ENST00000374490 HSP90AA1P07900 732 aaKnown RBP17.18■□□□□ 0.34
HMGCL-203ENST00000374490 ARHGEF25Q86VW2 580 aa17.18■□□□□ 0.34
HMGCL-203ENST00000374490 OSBPL3Q9H4L5 887 aa17.18■□□□□ 0.34
HMGCL-203ENST00000374490 FAM208AQ9UK61 1670 aaKnown RBP17.18■□□□□ 0.34
HMGCL-203ENST00000374490 RAB3GAP1Q15042 981 aa17.18■□□□□ 0.34
HMGCL-203ENST00000374490 BTG4Q9NY30 223 aa17.18■□□□□ 0.34
HMGCL-203ENST00000374490 TRAK2O60296 914 aa17.17■□□□□ 0.34
HMGCL-203ENST00000374490 REC8O95072 547 aa17.17■□□□□ 0.34
HMGCL-203ENST00000374490 EP400Q96L91 3159 aa17.16■□□□□ 0.34
HMGCL-203ENST00000374490 GOLGA6L3A6NEY3 463 aa17.16■□□□□ 0.34
HMGCL-203ENST00000374490 FAM98CQ17RN3 349 aaKnown RBP17.16■□□□□ 0.34
HMGCL-203ENST00000374490 SKOR2Q2VWA4 1001 aaPredicted RBP17.16■□□□□ 0.34
HMGCL-203ENST00000374490 SRCAPQ6ZRS2 3230 aa17.15■□□□□ 0.34
HMGCL-203ENST00000374490 FLIIQ13045 1269 aa17.15■□□□□ 0.34
HMGCL-203ENST00000374490 TAF7Q15545 349 aaPredicted RBP17.15■□□□□ 0.34
HMGCL-203ENST00000374490 USP26Q9BXU7 913 aa17.15■□□□□ 0.34
HMGCL-203ENST00000374490 MIS18AQ9NYP9 233 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms