RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 GCC1Q96CN9 775 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 PALD1Q9ULE6 856 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 A0A1B0GUL7 405 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 DNM1Q05193 864 aaKnown RBP12.39□□□□□ -0.43
PCDH1-202ENST00000357517 ANKRD50Q9ULJ7 1429 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 E9PCH4 1651 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 VPS37CA5D8V6 355 aaPredicted RBP12.39□□□□□ -0.43
PCDH1-202ENST00000357517 GRIPAP1Q4V328 841 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 FOXR1Q6PIV2 292 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 FERMT3Q86UX7 667 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 CARD14Q9BXL6 1004 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 CCDC9Q9Y3X0 531 aaKnown RBP12.39□□□□□ -0.43
PCDH1-202ENST00000357517 USP16Q9Y5T5 823 aa12.39□□□□□ -0.43
PCDH1-202ENST00000357517 IQGAP2Q13576 1575 aa12.38□□□□□ -0.43
PCDH1-202ENST00000357517 FAM173BQ6P4H8 233 aa12.38□□□□□ -0.43
PCDH1-202ENST00000357517 HOMER1Q86YM7 354 aa12.38□□□□□ -0.43
PCDH1-202ENST00000357517 SIRT2Q8IXJ6 389 aa12.38□□□□□ -0.43
PCDH1-202ENST00000357517 SENP3Q9H4L4 574 aaPredicted RBP12.38□□□□□ -0.43
PCDH1-202ENST00000357517 TSPY4P0CV99 314 aa12.38□□□□□ -0.43
PCDH1-202ENST00000357517 TSPY10P0CW01 314 aa12.38□□□□□ -0.43
PCDH1-202ENST00000357517 CASTP20810 708 aaKnown RBP12.38□□□□□ -0.43
PCDH1-202ENST00000357517 NOM1Q5C9Z4 860 aaKnown RBP12.38□□□□□ -0.43
PCDH1-202ENST00000357517 CTR9Q6PD62 1173 aa12.38□□□□□ -0.43
PCDH1-202ENST00000357517 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.38□□□□□ -0.43
PCDH1-202ENST00000357517 WDR33Q9C0J8 1336 aaKnown RBP12.38□□□□□ -0.43
PCDH1-202ENST00000357517 WDR62O43379 1518 aa12.38□□□□□ -0.43
PCDH1-202ENST00000357517 A0A087WWV3 80 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 UBE2HP62256 183 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 TTC22Q5TAA0 569 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 UBXN4Q92575 508 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 CXorf56Q9H5V9 222 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 PDRG1Q9NUG6 133 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 CCDC144AA2RUR9 1427 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 RILPL2Q969X0 211 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 SUFUQ9UMX1 484 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 DNMT1P26358 1616 aaKnown RBP12.37□□□□□ -0.43
PCDH1-202ENST00000357517 FAM200AQ8TCP9 573 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 PRAG1Q86YV5 1406 aa12.37□□□□□ -0.43
PCDH1-202ENST00000357517 GOLGA6L4A6NEF3 574 aa12.36□□□□□ -0.43
PCDH1-202ENST00000357517 OS9Q13438 667 aaPredicted RBP12.36□□□□□ -0.43
PCDH1-202ENST00000357517 LEKR1Q6ZMV7 388 aa12.36□□□□□ -0.43
PCDH1-202ENST00000357517 CFAP44Q96MT7 982 aa12.36□□□□□ -0.43
PCDH1-202ENST00000357517 DNAJC25Q9H1X3 360 aa12.36□□□□□ -0.43
PCDH1-202ENST00000357517 CWC27Q6UX04 472 aaKnown RBP12.36□□□□□ -0.43
PCDH1-202ENST00000357517 MNS1Q8NEH6 495 aa12.36□□□□□ -0.43
PCDH1-202ENST00000357517 SRRTQ9BXP5 876 aaKnown RBP12.36□□□□□ -0.43
PCDH1-202ENST00000357517 CBX8Q9HC52 389 aa12.36□□□□□ -0.43
PCDH1-202ENST00000357517 PTPRCP08575 1304 aa12.36□□□□□ -0.43
PCDH1-202ENST00000357517 TYRO3Q06418 890 aa12.36□□□□□ -0.43
PCDH1-202ENST00000357517 ISM2Q6H9L7 571 aa12.36□□□□□ -0.43
PCDH1-202ENST00000357517 DDX54Q8TDD1 881 aaKnown RBP12.36□□□□□ -0.43
PCDH1-202ENST00000357517 ARGLU1Q9NWB6 273 aaPredicted RBP12.36□□□□□ -0.43
PCDH1-202ENST00000357517 PRG4Q92954 1404 aaPredicted RBP12.35□□□□□ -0.43
PCDH1-202ENST00000357517 PDS5BQ9NTI5 1447 aa12.35□□□□□ -0.43
PCDH1-202ENST00000357517 PPIP5K1Q6PFW1 1433 aa12.35□□□□□ -0.43
PCDH1-202ENST00000357517 ERC2O15083 957 aa12.35□□□□□ -0.43
PCDH1-202ENST00000357517 PHACTR2O75167 634 aa12.35□□□□□ -0.43
PCDH1-202ENST00000357517 MNAT1P51948 309 aa12.35□□□□□ -0.43
PCDH1-202ENST00000357517 PPP2R5AQ15172 486 aa12.35□□□□□ -0.43
PCDH1-202ENST00000357517 AK7Q96M32 723 aa12.35□□□□□ -0.43
PCDH1-202ENST00000357517 PLCD4Q9BRC7 762 aa12.35□□□□□ -0.43
PCDH1-202ENST00000357517 ZNF75DP51815 510 aa12.35□□□□□ -0.43
PCDH1-202ENST00000357517 DHX8Q14562 1220 aaKnown RBP12.35□□□□□ -0.43
PCDH1-202ENST00000357517 SMC1AQ14683 1233 aaKnown RBP12.35□□□□□ -0.43
PCDH1-202ENST00000357517 PIK3C2GO75747 1445 aa12.34□□□□□ -0.43
PCDH1-202ENST00000357517 IRF6O14896 467 aa12.34□□□□□ -0.43
PCDH1-202ENST00000357517 ZBTB7BO15156 539 aaPredicted RBP12.34□□□□□ -0.43
PCDH1-202ENST00000357517 ECM2O94769 699 aaPredicted RBP12.34□□□□□ -0.43
PCDH1-202ENST00000357517 MAP3K11Q16584 847 aa12.34□□□□□ -0.43
PCDH1-202ENST00000357517 TNMDQ9H2S6 317 aa12.34□□□□□ -0.43
PCDH1-202ENST00000357517 ZSWIM4Q9H7M6 989 aa12.34□□□□□ -0.43
PCDH1-202ENST00000357517 ATP2B1P20020 1258 aa12.34□□□□□ -0.43
PCDH1-202ENST00000357517 ZNF165P49910 485 aa12.34□□□□□ -0.43
PCDH1-202ENST00000357517 MICALL1Q8N3F8 863 aa12.34□□□□□ -0.43
PCDH1-202ENST00000357517 RNF217Q8TC41 542 aa12.34□□□□□ -0.43
PCDH1-202ENST00000357517 CCDC69A6NI79 296 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 GOLGA6L19H0YKK7 550 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 MAP2K2P36507 400 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 HNRNPMP52272 730 aaKnown RBP eCLIP12.33□□□□□ -0.44
PCDH1-202ENST00000357517 SNW1Q13573 536 aaKnown RBP12.33□□□□□ -0.44
PCDH1-202ENST00000357517 CFAP53Q96M91 514 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 THUMPD2Q9BTF0 503 aaKnown RBP12.33□□□□□ -0.44
PCDH1-202ENST00000357517 NUP62CLQ9H1M0 184 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 VPS18Q9P253 973 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 ADAM21Q9UKJ8 722 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 URI1O94763 535 aaPredicted RBP12.33□□□□□ -0.44
PCDH1-202ENST00000357517 MUM1L1Q5H9M0 696 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 LRRC8AQ8IWT6 810 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 FBXO18Q8NFZ0 1043 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 FAM53CQ9NYF3 392 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 TFIP11Q9UBB9 837 aaKnown RBP12.33□□□□□ -0.44
PCDH1-202ENST00000357517 MRVI1Q9Y6F6 885 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 WDR7Q9Y4E6 1490 aa12.33□□□□□ -0.44
PCDH1-202ENST00000357517 EIF3CLB5ME19 914 aaKnown RBP12.32□□□□□ -0.44
PCDH1-202ENST00000357517 CPA1P15085 419 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 LIG1P18858 919 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 MCM6Q14566 821 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 ANKRD20A12PQ8NF67 263 aa12.32□□□□□ -0.44
PCDH1-202ENST00000357517 EIF3CQ99613 913 aaKnown RBP12.32□□□□□ -0.44
PCDH1-202ENST00000357517 BRMS1Q9HCU9 246 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms