RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TEFQ10587 303 aa29.15■■■□□ 2.26
SHMT1-203ENST00000354098 DEFB132Q7Z7B7 95 aa29.15■■■□□ 2.26
SHMT1-203ENST00000354098 SALL2Q9Y467 1007 aaPredicted RBP29.13■■■□□ 2.25
SHMT1-203ENST00000354098 SOCS7O14512 581 aa29.12■■■□□ 2.25
SHMT1-203ENST00000354098 LMOD3Q0VAK6 560 aa29.12■■■□□ 2.25
SHMT1-203ENST00000354098 ASAP1Q9ULH1 1129 aa29.12■■■□□ 2.25
SHMT1-203ENST00000354098 EN1Q05925 392 aaPredicted RBP29.12■■■□□ 2.25
SHMT1-203ENST00000354098 ATG3Q9NT62 314 aa29.1■■■□□ 2.25
SHMT1-203ENST00000354098 BAG6P46379 1132 aa29.09■■■□□ 2.25
SHMT1-203ENST00000354098 PLSCR1O15162 318 aa29.09■■■□□ 2.25
SHMT1-203ENST00000354098 SLC39A6Q13433 755 aa29.09■■■□□ 2.25
SHMT1-203ENST00000354098 SIPA1L3O60292 1781 aaPredicted RBP29.07■■■□□ 2.24
SHMT1-203ENST00000354098 CAMKK2Q96RR4 588 aa29.07■■■□□ 2.24
SHMT1-203ENST00000354098 EZH2Q15910 746 aaKnown RBP29.06■■■□□ 2.24
SHMT1-203ENST00000354098 TAF7Q15545 349 aaPredicted RBP29.05■■■□□ 2.24
SHMT1-203ENST00000354098 PROM2Q8N271 834 aa29.05■■■□□ 2.24
SHMT1-203ENST00000354098 MIS18AQ9NYP9 233 aa29.05■■■□□ 2.24
SHMT1-203ENST00000354098 PALLDQ8WX93 1383 aa29.05■■■□□ 2.24
SHMT1-203ENST00000354098 BTBD11A6QL63 1104 aa29.05■■■□□ 2.24
SHMT1-203ENST00000354098 CCDC27Q2M243 656 aa29.05■■■□□ 2.24
SHMT1-203ENST00000354098 WWC1Q8IX03 1113 aa29.05■■■□□ 2.24
SHMT1-203ENST00000354098 SMARCC1Q92922 1105 aaPredicted RBP29.03■■■□□ 2.24
SHMT1-203ENST00000354098 KCNQ3O43525 872 aa29.02■■■□□ 2.24
SHMT1-203ENST00000354098 NCBP3Q53F19 620 aaKnown RBP29.02■■■□□ 2.24
SHMT1-203ENST00000354098 KCNQ4P56696 695 aa29.02■■■□□ 2.24
SHMT1-203ENST00000354098 TXNRD1Q16881 649 aa29.01■■■□□ 2.23
SHMT1-203ENST00000354098 ZNF790Q6PG37 636 aa29.01■■■□□ 2.23
SHMT1-203ENST00000354098 PTCD1O75127 700 aaKnown RBP29■■■□□ 2.23
SHMT1-203ENST00000354098 PAPPAQ13219 1627 aa29■■■□□ 2.23
SHMT1-203ENST00000354098 RBM42Q9BTD8 480 aaKnown RBP28.99■■■□□ 2.23
SHMT1-203ENST00000354098 LAS1LQ9Y4W2 734 aaKnown RBP28.99■■■□□ 2.23
SHMT1-203ENST00000354098 LY75O60449 1722 aa28.99■■■□□ 2.23
SHMT1-203ENST00000354098 LRRC4BQ9NT99 713 aa28.99■■■□□ 2.23
SHMT1-203ENST00000354098 SLC4A9Q96Q91 983 aa28.98■■■□□ 2.23
SHMT1-203ENST00000354098 RGPD3A6NKT7 1758 aaPredicted RBP28.97■■■□□ 2.23
SHMT1-203ENST00000354098 RGPD4Q7Z3J3 1758 aa28.97■■■□□ 2.23
SHMT1-203ENST00000354098 LOC102724428A0A0B4J2F2 783 aa28.97■■■□□ 2.23
SHMT1-203ENST00000354098 SIK1P57059 783 aa28.97■■■□□ 2.23
SHMT1-203ENST00000354098 TTC5Q8N0Z6 440 aa28.97■■■□□ 2.23
SHMT1-203ENST00000354098 NGEFQ8N5V2 710 aa28.97■■■□□ 2.23
SHMT1-203ENST00000354098 CCNL1Q9UK58 526 aaPredicted RBP28.96■■■□□ 2.23
SHMT1-203ENST00000354098 KCPQ6ZWJ8 1503 aa28.96■■■□□ 2.23
SHMT1-203ENST00000354098 ZNF496Q96IT1 587 aaPredicted RBP28.95■■■□□ 2.22
SHMT1-203ENST00000354098 TSPYL4Q9UJ04 414 aa28.95■■■□□ 2.22
SHMT1-203ENST00000354098 CHL1O00533 1208 aa28.94■■■□□ 2.22
SHMT1-203ENST00000354098 CFAP44Q96MT7 982 aa28.94■■■□□ 2.22
SHMT1-203ENST00000354098 ZNF853P0CG23 659 aa28.93■■■□□ 2.22
SHMT1-203ENST00000354098 ATP6V1AP38606 617 aa28.93■■■□□ 2.22
SHMT1-203ENST00000354098 CALD1Q05682 793 aaKnown RBP28.93■■■□□ 2.22
SHMT1-203ENST00000354098 SLC27A3Q5K4L6 730 aa28.93■■■□□ 2.22
SHMT1-203ENST00000354098 ZNF521Q96K83 1311 aa28.93■■■□□ 2.22
SHMT1-203ENST00000354098 HNRNPUQ00839 825 aaKnown RBP eCLIP28.93■■■□□ 2.22
SHMT1-203ENST00000354098 KDM3BQ7LBC6 1761 aa28.92■■■□□ 2.22
SHMT1-203ENST00000354098 UBR2Q8IWV8 1755 aa28.92■■■□□ 2.22
SHMT1-203ENST00000354098 ITPK1Q13572 414 aa28.92■■■□□ 2.22
SHMT1-203ENST00000354098 WDR63Q8IWG1 891 aa28.92■■■□□ 2.22
SHMT1-203ENST00000354098 IFT57Q9NWB7 429 aa28.92■■■□□ 2.22
SHMT1-203ENST00000354098 RREB1Q92766 1687 aa28.91■■■□□ 2.22
SHMT1-203ENST00000354098 BABAM1Q9NWV8 329 aa28.91■■■□□ 2.22
SHMT1-203ENST00000354098 MBIPQ9NS73 344 aa28.9■■■□□ 2.22
SHMT1-203ENST00000354098 GNAI1P63096 354 aa28.89■■■□□ 2.22
SHMT1-203ENST00000354098 FMNL2Q96PY5 1086 aa28.89■■■□□ 2.22
SHMT1-203ENST00000354098 SPINK5Q9NQ38 1064 aaPredicted RBP28.89■■■□□ 2.22
SHMT1-203ENST00000354098 EIF4A1P60842 406 aaKnown RBP28.89■■■□□ 2.21
SHMT1-203ENST00000354098 HEG1Q9ULI3 1381 aa28.88■■■□□ 2.21
SHMT1-203ENST00000354098 IL16Q14005 1332 aa28.87■■■□□ 2.21
SHMT1-203ENST00000354098 NUP188Q5SRE5 1749 aa28.87■■■□□ 2.21
SHMT1-203ENST00000354098 LINC00116Q8NCU8 138 aa28.86■■■□□ 2.21
SHMT1-203ENST00000354098 PRAMEF22A3QJZ6 481 aa28.86■■■□□ 2.21
SHMT1-203ENST00000354098 DNAJC10Q8IXB1 793 aa28.86■■■□□ 2.21
SHMT1-203ENST00000354098 VSIG10Q8N0Z9 540 aa28.86■■■□□ 2.21
SHMT1-203ENST00000354098 TSR2Q969E8 191 aaKnown RBP28.86■■■□□ 2.21
SHMT1-203ENST00000354098 KRT24Q2M2I5 525 aa28.84■■■□□ 2.21
SHMT1-203ENST00000354098 TJP1Q07157 1748 aa28.84■■■□□ 2.21
SHMT1-203ENST00000354098 ZNF831Q5JPB2 1677 aa28.84■■■□□ 2.21
SHMT1-203ENST00000354098 ANO8Q9HCE9 1232 aaPredicted RBP28.83■■■□□ 2.21
SHMT1-203ENST00000354098 C5P01031 1676 aa28.83■■■□□ 2.21
SHMT1-203ENST00000354098 TAF1LQ8IZX4 1826 aa28.82■■■□□ 2.2
SHMT1-203ENST00000354098 SNRPA1P09661 255 aaKnown RBP28.81■■■□□ 2.2
SHMT1-203ENST00000354098 GOLGA2Q08379 1002 aa28.81■■■□□ 2.2
SHMT1-203ENST00000354098 GIGYF1O75420 1035 aaPredicted RBP28.8■■■□□ 2.2
SHMT1-203ENST00000354098 ZNF827Q17R98 1081 aa28.8■■■□□ 2.2
SHMT1-203ENST00000354098 CDCA7LQ96GN5 454 aa28.8■■■□□ 2.2
SHMT1-203ENST00000354098 USP16Q9Y5T5 823 aa28.8■■■□□ 2.2
SHMT1-203ENST00000354098 FANCIQ9NVI1 1328 aa28.79■■■□□ 2.2
SHMT1-203ENST00000354098 CYP19A1P11511 503 aaPredicted RBP28.79■■■□□ 2.2
SHMT1-203ENST00000354098 AKT1S1Q96B36 256 aa28.79■■■□□ 2.2
SHMT1-203ENST00000354098 CICQ96RK0 1608 aaPredicted RBP28.79■■■□□ 2.2
SHMT1-203ENST00000354098 COL5A3P25940 1745 aaPredicted RBP28.78■■■□□ 2.2
SHMT1-203ENST00000354098 C4BP0C0L5 1744 aa28.77■■■□□ 2.2
SHMT1-203ENST00000354098 NBPF14Q5TI25 921 aa28.77■■■□□ 2.2
SHMT1-203ENST00000354098 TEX13AQ9BXU3 409 aaPredicted RBP28.77■■■□□ 2.2
SHMT1-203ENST00000354098 CRKLP46109 303 aaKnown RBP28.76■■■□□ 2.19
SHMT1-203ENST00000354098 SLFN5Q08AF3 891 aa28.76■■■□□ 2.19
SHMT1-203ENST00000354098 SLC15A2Q16348 729 aa28.76■■■□□ 2.19
SHMT1-203ENST00000354098 C8orf58Q8NAV2 365 aa28.76■■■□□ 2.19
SHMT1-203ENST00000354098 ELL2O00472 640 aaPredicted RBP28.75■■■□□ 2.19
SHMT1-203ENST00000354098 MYH16Q9H6N6 1097 aa28.75■■■□□ 2.19
SHMT1-203ENST00000354098 STK32BQ9NY57 414 aa28.75■■■□□ 2.19
SHMT1-203ENST00000354098 STARD3NLO95772 234 aa28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms