RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 GRPEL1Q9HAV7 217 aa7.14□□□□□ -1.27
CSDE1-202ENST00000339438 CCDC88AQ3V6T2 1871 aa7.13□□□□□ -1.27
CSDE1-202ENST00000339438 ZSCAN20P17040 1043 aaPredicted RBP7.13□□□□□ -1.27
CSDE1-202ENST00000339438 CABP1Q9NZU7 370 aa7.13□□□□□ -1.27
CSDE1-202ENST00000339438 WDR17Q8IZU2 1322 aa7.13□□□□□ -1.27
CSDE1-202ENST00000339438 OFD1O75665 1012 aa7.13□□□□□ -1.27
CSDE1-202ENST00000339438 UTP14CQ5TAP6 766 aaKnown RBP7.13□□□□□ -1.27
CSDE1-202ENST00000339438 AFF2P51816 1311 aa7.13□□□□□ -1.27
CSDE1-202ENST00000339438 IBTKQ9P2D0 1353 aaPredicted RBP7.13□□□□□ -1.27
CSDE1-202ENST00000339438 PDIA4P13667 645 aaKnown RBP7.13□□□□□ -1.27
CSDE1-202ENST00000339438 UNC5CLQ8IV45 518 aa7.12□□□□□ -1.27
CSDE1-202ENST00000339438 EVC2Q86UK5 1308 aa7.12□□□□□ -1.27
CSDE1-202ENST00000339438 CDK5RAP2Q96SN8 1893 aa7.12□□□□□ -1.27
CSDE1-202ENST00000339438 SPEF2Q9C093 1822 aa7.12□□□□□ -1.27
CSDE1-202ENST00000339438 DMTNQ08495 405 aa7.12□□□□□ -1.27
CSDE1-202ENST00000339438 TBC1D2Q9BYX2 928 aa7.12□□□□□ -1.27
CSDE1-202ENST00000339438 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.12□□□□□ -1.27
CSDE1-202ENST00000339438 TMC1Q8TDI8 760 aa7.12□□□□□ -1.27
CSDE1-202ENST00000339438 THRAP3Q9Y2W1 955 aaKnown RBP7.12□□□□□ -1.27
CSDE1-202ENST00000339438 ZNF521Q96K83 1311 aa7.12□□□□□ -1.27
CSDE1-202ENST00000339438 MAP3K5Q99683 1374 aa7.12□□□□□ -1.27
CSDE1-202ENST00000339438 PPP1R9BQ96SB3 815 aa7.11□□□□□ -1.27
CSDE1-202ENST00000339438 SLKQ9H2G2 1235 aaPredicted RBP7.11□□□□□ -1.27
CSDE1-202ENST00000339438 SLC12A5Q9H2X9 1139 aa7.11□□□□□ -1.27
CSDE1-202ENST00000339438 UPF1Q92900 1129 aaKnown RBP eCLIP7.11□□□□□ -1.272e-6■■□□□ 14.2
CSDE1-202ENST00000339438 LRP10Q7Z4F1 713 aa7.11□□□□□ -1.27
CSDE1-202ENST00000339438 MINK1Q8N4C8 1332 aaPredicted RBP7.11□□□□□ -1.27
CSDE1-202ENST00000339438 TMEM51Q9NW97 253 aa7.11□□□□□ -1.27
CSDE1-202ENST00000339438 TRAK2O60296 914 aa7.1□□□□□ -1.27
CSDE1-202ENST00000339438 IL13P35225 146 aa7.1□□□□□ -1.27
CSDE1-202ENST00000339438 MAP3K19Q56UN5 1328 aa7.1□□□□□ -1.27
CSDE1-202ENST00000339438 IGHDP01880 384 aa7.1□□□□□ -1.27
CSDE1-202ENST00000339438 GCP02774 474 aa7.1□□□□□ -1.27
CSDE1-202ENST00000339438 GJD4Q96KN9 370 aaPredicted RBP7.1□□□□□ -1.27
CSDE1-202ENST00000339438 TBC1D32Q96NH3 1257 aa7.1□□□□□ -1.27
CSDE1-202ENST00000339438 CAMKK2Q96RR4 588 aa7.1□□□□□ -1.27
CSDE1-202ENST00000339438 POLKQ9UBT6 870 aa7.1□□□□□ -1.27
CSDE1-202ENST00000339438 ISY1Q9ULR0 285 aaKnown RBP7.1□□□□□ -1.27
CSDE1-202ENST00000339438 MYH16Q9H6N6 1097 aa7.1□□□□□ -1.27
CSDE1-202ENST00000339438 DDX60LQ5H9U9 1706 aaKnown RBP7.09□□□□□ -1.27
CSDE1-202ENST00000339438 PTF1AQ7RTS3 328 aa7.09□□□□□ -1.27
CSDE1-202ENST00000339438 RALBP1Q15311 655 aa7.09□□□□□ -1.27
CSDE1-202ENST00000339438 DUSP27Q5VZP5 1158 aa7.09□□□□□ -1.27
CSDE1-202ENST00000339438 BBXQ8WY36 941 aaPredicted RBP7.09□□□□□ -1.27
CSDE1-202ENST00000339438 GZF1Q9H116 711 aaPredicted RBP7.09□□□□□ -1.27
CSDE1-202ENST00000339438 ZHX1Q9UKY1 873 aaPredicted RBP7.09□□□□□ -1.27
CSDE1-202ENST00000339438 FOXO3O43524 673 aa7.09□□□□□ -1.28
CSDE1-202ENST00000339438 HOXC9P31274 260 aa7.09□□□□□ -1.28
CSDE1-202ENST00000339438 IP6K1Q92551 441 aa7.08□□□□□ -1.28
CSDE1-202ENST00000339438 ARXQ96QS3 562 aa7.08□□□□□ -1.28
CSDE1-202ENST00000339438 NME9Q86XW9 330 aa7.08□□□□□ -1.28
CSDE1-202ENST00000339438 MAP7D2Q96T17 732 aa7.08□□□□□ -1.28
CSDE1-202ENST00000339438 DOCK2Q92608 1830 aa7.08□□□□□ -1.28
CSDE1-202ENST00000339438 TRMT2AQ8IZ69 625 aaKnown RBP7.08□□□□□ -1.28
CSDE1-202ENST00000339438 CARD10Q9BWT7 1032 aa7.08□□□□□ -1.28
CSDE1-202ENST00000339438 FLT4P35916 1363 aa7.08□□□□□ -1.28
CSDE1-202ENST00000339438 NAP1L2Q9ULW6 460 aaPredicted RBP7.07□□□□□ -1.28
CSDE1-202ENST00000339438 AMIGO3Q86WK7 504 aa7.07□□□□□ -1.28
CSDE1-202ENST00000339438 STAG3Q9UJ98 1225 aa7.07□□□□□ -1.28
CSDE1-202ENST00000339438 ATF3P18847 181 aa7.06□□□□□ -1.28
CSDE1-202ENST00000339438 WDR90Q96KV7 1748 aa7.06□□□□□ -1.28
CSDE1-202ENST00000339438 ZNF500O60304 480 aaPredicted RBP7.06□□□□□ -1.28
CSDE1-202ENST00000339438 ZSCAN30Q86W11 494 aa7.06□□□□□ -1.28
CSDE1-202ENST00000339438 NLRP13Q86W25 1043 aa7.06□□□□□ -1.28
CSDE1-202ENST00000339438 CARD11Q9BXL7 1154 aa7.06□□□□□ -1.28
CSDE1-202ENST00000339438 NCBP3Q53F19 620 aaKnown RBP7.05□□□□□ -1.28
CSDE1-202ENST00000339438 MARCH10Q8NA82 808 aaPredicted RBP7.05□□□□□ -1.28
CSDE1-202ENST00000339438 COL4A5P29400 1685 aa7.05□□□□□ -1.28
CSDE1-202ENST00000339438 RIC1Q4ADV7 1423 aa7.05□□□□□ -1.28
CSDE1-202ENST00000339438 ESCO1Q5FWF5 840 aa7.05□□□□□ -1.28
CSDE1-202ENST00000339438 PRDM10Q9NQV6 1147 aa7.05□□□□□ -1.28
CSDE1-202ENST00000339438 BECN1Q14457 450 aa7.05□□□□□ -1.28
CSDE1-202ENST00000339438 IPO4Q8TEX9 1081 aaKnown RBP7.05□□□□□ -1.28
CSDE1-202ENST00000339438 SLC4A9Q96Q91 983 aa7.05□□□□□ -1.28
CSDE1-202ENST00000339438 PPP4R3BQ5MIZ7 849 aa7.04□□□□□ -1.28
CSDE1-202ENST00000339438 AKT1S1Q96B36 256 aa7.04□□□□□ -1.28
CSDE1-202ENST00000339438 CHMP4BQ9H444 224 aaKnown RBP7.04□□□□□ -1.28
CSDE1-202ENST00000339438 STK26Q9P289 416 aa7.04□□□□□ -1.28
CSDE1-202ENST00000339438 LOC285556D6RIA3 1793 aa7.04□□□□□ -1.28
CSDE1-202ENST00000339438 CABLES1Q8TDN4 633 aa7.04□□□□□ -1.28
CSDE1-202ENST00000339438 LARP1Q6PKG0 1096 aaKnown RBP7.04□□□□□ -1.28
CSDE1-202ENST00000339438 PDLIM2Q96JY6 352 aa7.04□□□□□ -1.28
CSDE1-202ENST00000339438 ZNF830Q96NB3 372 aaPredicted RBP7.04□□□□□ -1.28
CSDE1-202ENST00000339438 CCDC94Q9BW85 323 aaPredicted RBP7.04□□□□□ -1.28
CSDE1-202ENST00000339438 FAM13BQ9NYF5 915 aa7.04□□□□□ -1.28
CSDE1-202ENST00000339438 ZNF710Q8N1W2 664 aa7.04□□□□□ -1.28
CSDE1-202ENST00000339438 PMFBP1Q8TBY8 1022 aa7.04□□□□□ -1.28
CSDE1-202ENST00000339438 RBM6P78332 1123 aaKnown RBP7.03□□□□□ -1.28
CSDE1-202ENST00000339438 CCDC173Q0VFZ6 552 aa7.03□□□□□ -1.28
CSDE1-202ENST00000339438 SAFB2Q14151 953 aaKnown RBP eCLIP7.03□□□□□ -1.28
CSDE1-202ENST00000339438 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.03□□□□□ -1.28
CSDE1-202ENST00000339438 DYNC1I1O14576 645 aa7.03□□□□□ -1.28
CSDE1-202ENST00000339438 NOL7Q9UMY1 257 aaKnown RBP7.03□□□□□ -1.28
CSDE1-202ENST00000339438 ZNF772Q68DY9 489 aaPredicted RBP7.03□□□□□ -1.28
CSDE1-202ENST00000339438 CHMP5Q9NZZ3 219 aa7.03□□□□□ -1.28
CSDE1-202ENST00000339438 ADCY9O60503 1353 aa7.02□□□□□ -1.29
CSDE1-202ENST00000339438 TAF7LQ5H9L4 462 aa7.02□□□□□ -1.29
CSDE1-202ENST00000339438 UQCRHLA0A096LP55 91 aa7.02□□□□□ -1.29
CSDE1-202ENST00000339438 UQCRHP07919 91 aa7.02□□□□□ -1.29
CSDE1-202ENST00000339438 FBLN1P23142 703 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms