RNA–Protein interactions for RNA: ENST00000338910.8

PSPC1-201, Transcript of paraspeckle component 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PSPC1, Length 2,407 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-201ENST00000338910 RAB3GAP1Q15042 981 aa23.26■■□□□ 1.31
PSPC1-201ENST00000338910 ARHGEF25Q86VW2 580 aa23.26■■□□□ 1.31
PSPC1-201ENST00000338910 HAP1P54257 671 aaPredicted RBP23.25■■□□□ 1.31
PSPC1-201ENST00000338910 GBP4Q96PP9 640 aa23.25■■□□□ 1.31
PSPC1-201ENST00000338910 KIAA0232Q92628 1395 aa23.25■■□□□ 1.31
PSPC1-201ENST00000338910 SKOR2Q2VWA4 1001 aaPredicted RBP23.24■■□□□ 1.31
PSPC1-201ENST00000338910 CHMP4BQ9H444 224 aaKnown RBP23.24■■□□□ 1.31
PSPC1-201ENST00000338910 GNAT3A8MTJ3 354 aa23.24■■□□□ 1.31
PSPC1-201ENST00000338910 SLIT3O75094 1523 aa23.24■■□□□ 1.31
PSPC1-201ENST00000338910 STRCQ7RTU9 1775 aa23.23■■□□□ 1.31
PSPC1-201ENST00000338910 LRRC59Q96AG4 307 aaKnown RBP23.23■■□□□ 1.31
PSPC1-201ENST00000338910 MSH6P52701 1360 aa23.23■■□□□ 1.31
PSPC1-201ENST00000338910 TPM2P07951 284 aa23.22■■□□□ 1.31
PSPC1-201ENST00000338910 SLC4A2P04920 1241 aa23.22■■□□□ 1.31
PSPC1-201ENST00000338910 PTMSP20962 102 aa23.21■■□□□ 1.31
PSPC1-201ENST00000338910 HTATSF1O43719 755 aaKnown RBP23.2■■□□□ 1.3
PSPC1-201ENST00000338910 IL17REQ8NFR9 667 aa23.2■■□□□ 1.3
PSPC1-201ENST00000338910 AXIN2Q9Y2T1 843 aa23.2■■□□□ 1.3
PSPC1-201ENST00000338910 PHRF1Q9P1Y6 1649 aaKnown RBP23.2■■□□□ 1.3
PSPC1-201ENST00000338910 HSP90AB1P08238 724 aaKnown RBP23.2■■□□□ 1.3
PSPC1-201ENST00000338910 ZC3H6P61129 1189 aaKnown RBP23.2■■□□□ 1.3
PSPC1-201ENST00000338910 ZNF335Q9H4Z2 1342 aaPredicted RBP23.19■■□□□ 1.3
PSPC1-201ENST00000338910 NUCB1Q02818 461 aa23.19■■□□□ 1.3
PSPC1-201ENST00000338910 SIRT2Q8IXJ6 389 aa23.19■■□□□ 1.3
PSPC1-201ENST00000338910 LNPKQ9C0E8 428 aa23.19■■□□□ 1.3
PSPC1-201ENST00000338910 KIF2CQ99661 725 aa23.18■■□□□ 1.3
PSPC1-201ENST00000338910 RGPD2P0DJD1 1756 aa23.18■■□□□ 1.3
PSPC1-201ENST00000338910 NPHP3Q7Z494 1330 aa23.18■■□□□ 1.3
PSPC1-201ENST00000338910 ALS2Q96Q42 1657 aa23.18■■□□□ 1.3
PSPC1-201ENST00000338910 MAP3K5Q99683 1374 aa23.17■■□□□ 1.3
PSPC1-201ENST00000338910 ANKRD24Q8TF21 1146 aa23.17■■□□□ 1.3
PSPC1-201ENST00000338910 PPP1R9BQ96SB3 815 aa23.17■■□□□ 1.3
PSPC1-201ENST00000338910 XIRP1Q702N8 1843 aaKnown RBP23.17■■□□□ 1.3
PSPC1-201ENST00000338910 INTS3Q68E01 1043 aaKnown RBP23.17■■□□□ 1.3
PSPC1-201ENST00000338910 CCDC173Q0VFZ6 552 aa23.16■■□□□ 1.3
PSPC1-201ENST00000338910 ANKRD45Q5TZF3 282 aa23.16■■□□□ 1.3
PSPC1-201ENST00000338910 CHD1LQ86WJ1 897 aa23.16■■□□□ 1.3
PSPC1-201ENST00000338910 MED1Q15648 1581 aaPredicted RBP23.15■■□□□ 1.3
PSPC1-201ENST00000338910 G2E3Q7L622 706 aa23.15■■□□□ 1.3
PSPC1-201ENST00000338910 CABLES1Q8TDN4 633 aa23.14■■□□□ 1.3
PSPC1-201ENST00000338910 PTPRCP08575 1304 aa23.14■■□□□ 1.3
PSPC1-201ENST00000338910 RGS12O14924 1447 aa23.14■■□□□ 1.29
PSPC1-201ENST00000338910 CD2BP2O95400 341 aaKnown RBP23.13■■□□□ 1.29
PSPC1-201ENST00000338910 TAF7Q15545 349 aaPredicted RBP23.13■■□□□ 1.29
PSPC1-201ENST00000338910 BMP2KLQ5H9B9 411 aa23.13■■□□□ 1.29
PSPC1-201ENST00000338910 NECTIN2Q92692 538 aa23.13■■□□□ 1.29
PSPC1-201ENST00000338910 GCC1Q96CN9 775 aa23.13■■□□□ 1.29
PSPC1-201ENST00000338910 IBTKQ9P2D0 1353 aaPredicted RBP23.13■■□□□ 1.29
PSPC1-201ENST00000338910 PDCL3Q9H2J4 239 aa23.12■■□□□ 1.29
PSPC1-201ENST00000338910 CLEC17AQ6ZS10 378 aa23.12■■□□□ 1.29
PSPC1-201ENST00000338910 KIAA1211Q6ZU35 1233 aa23.12■■□□□ 1.29
PSPC1-201ENST00000338910 BRINP3Q76B58 766 aa23.12■■□□□ 1.29
PSPC1-201ENST00000338910 NASPP49321 788 aaPredicted RBP23.11■■□□□ 1.29
PSPC1-201ENST00000338910 ZSCAN30Q86W11 494 aa23.11■■□□□ 1.29
PSPC1-201ENST00000338910 F6X3S4 739 aa23.11■■□□□ 1.29
PSPC1-201ENST00000338910 K7ELQ4 463 aaPredicted RBP23.11■■□□□ 1.29
PSPC1-201ENST00000338910 SLC4A10Q6U841 1118 aa23.11■■□□□ 1.29
PSPC1-201ENST00000338910 STK31Q9BXU1 1019 aa23.1■■□□□ 1.29
PSPC1-201ENST00000338910 LRRC37A3O60309 1634 aa23.1■■□□□ 1.29
PSPC1-201ENST00000338910 LGR6Q9HBX8 967 aa23.1■■□□□ 1.29
PSPC1-201ENST00000338910 RGPD5Q99666 1765 aa23.09■■□□□ 1.29
PSPC1-201ENST00000338910 TNS3Q68CZ2 1445 aa23.09■■□□□ 1.29
PSPC1-201ENST00000338910 PXDNQ92626 1479 aa23.09■■□□□ 1.29
PSPC1-201ENST00000338910 ERBB3P21860 1342 aa23.09■■□□□ 1.29
PSPC1-201ENST00000338910 SPATA31A3Q5VYP0 1347 aa23.09■■□□□ 1.29
PSPC1-201ENST00000338910 SSFA2P28290 1259 aa23.08■■□□□ 1.29
PSPC1-201ENST00000338910 KLHL40Q2TBA0 621 aa23.08■■□□□ 1.29
PSPC1-201ENST00000338910 FOXD4L1Q9NU39 408 aa23.08■■□□□ 1.29
PSPC1-201ENST00000338910 OFD1O75665 1012 aa23.08■■□□□ 1.28
PSPC1-201ENST00000338910 MEIS3Q99687 375 aa23.08■■□□□ 1.28
PSPC1-201ENST00000338910 SLAIN2Q9P270 581 aa23.08■■□□□ 1.28
PSPC1-201ENST00000338910 CCDC30Q5VVM6 783 aa23.07■■□□□ 1.28
PSPC1-201ENST00000338910 ZNF530Q6P9A1 599 aaPredicted RBP23.07■■□□□ 1.28
PSPC1-201ENST00000338910 PLEKHO1Q53GL0 409 aaPredicted RBP23.07■■□□□ 1.28
PSPC1-201ENST00000338910 GOLGA6L22H0YM25 854 aa23.06■■□□□ 1.28
PSPC1-201ENST00000338910 NCAPD2Q15021 1401 aa23.06■■□□□ 1.28
PSPC1-201ENST00000338910 CEMIPQ8WUJ3 1361 aa23.05■■□□□ 1.28
PSPC1-201ENST00000338910 CHRNA2Q15822 529 aa23.05■■□□□ 1.28
PSPC1-201ENST00000338910 AMOTQ4VCS5 1084 aa23.04■■□□□ 1.28
PSPC1-201ENST00000338910 AKAP4Q5JQC9 854 aa23.04■■□□□ 1.28
PSPC1-201ENST00000338910 TERF1P54274 439 aa23.04■■□□□ 1.28
PSPC1-201ENST00000338910 MPRIPQ6WCQ1 1025 aa23.04■■□□□ 1.28
PSPC1-201ENST00000338910 ANP32BQ92688 251 aaKnown RBP23.04■■□□□ 1.28
PSPC1-201ENST00000338910 RBM42Q9BTD8 480 aaKnown RBP23.04■■□□□ 1.28
PSPC1-201ENST00000338910 BABAM1Q9NWV8 329 aa23.04■■□□□ 1.28
PSPC1-201ENST00000338910 BAG4O95429 457 aaKnown RBP23.03■■□□□ 1.28
PSPC1-201ENST00000338910 FLIIQ13045 1269 aa23.03■■□□□ 1.28
PSPC1-201ENST00000338910 FKBP5Q13451 457 aaPredicted RBP23.03■■□□□ 1.28
PSPC1-201ENST00000338910 TBC1D9Q6ZT07 1266 aa23.03■■□□□ 1.28
PSPC1-201ENST00000338910 ANKRD44Q8N8A2 993 aa23.03■■□□□ 1.28
PSPC1-201ENST00000338910 DDX49Q9Y6V7 483 aaKnown RBP23.03■■□□□ 1.28
PSPC1-201ENST00000338910 DCTPP1Q9H773 170 aa23.03■■□□□ 1.28
PSPC1-201ENST00000338910 NLRP2Q9NX02 1062 aa23.03■■□□□ 1.28
PSPC1-201ENST00000338910 CEP85Q6P2H3 762 aa23.02■■□□□ 1.28
PSPC1-201ENST00000338910 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.02■■□□□ 1.28
PSPC1-201ENST00000338910 RPAP2Q8IXW5 612 aaPredicted RBP23.02■■□□□ 1.28
PSPC1-201ENST00000338910 ZNF445P59923 1031 aa23.01■■□□□ 1.27
PSPC1-201ENST00000338910 MSNP26038 577 aaKnown RBP23.01■■□□□ 1.27
PSPC1-201ENST00000338910 CCT4P50991 539 aaKnown RBP23.01■■□□□ 1.27
PSPC1-201ENST00000338910 C1orf141Q5JVX7 400 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms