RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 SYNMO15061 1565 aa8.3□□□□□ -1.08
SF3B1-201ENST00000335508 MYL6BP14649 208 aa8.29□□□□□ -1.08
SF3B1-201ENST00000335508 NUCB2P80303 420 aa8.29□□□□□ -1.08
SF3B1-201ENST00000335508 NACAP1Q9BZK3 213 aa8.29□□□□□ -1.08
SF3B1-201ENST00000335508 SETD1BQ9UPS6 1966 aaKnown RBP8.29□□□□□ -1.08
SF3B1-201ENST00000335508 ZPR1O75312 459 aa8.29□□□□□ -1.08
SF3B1-201ENST00000335508 IFIT5Q13325 482 aaKnown RBP8.29□□□□□ -1.08
SF3B1-201ENST00000335508 CABLES1Q8TDN4 633 aa8.29□□□□□ -1.08
SF3B1-201ENST00000335508 ERBB3P21860 1342 aa8.29□□□□□ -1.08
SF3B1-201ENST00000335508 SLKQ9H2G2 1235 aaPredicted RBP8.29□□□□□ -1.08
SF3B1-201ENST00000335508 IGSF1Q8N6C5 1336 aa8.29□□□□□ -1.08
SF3B1-201ENST00000335508 FAM83GA6ND36 823 aa8.29□□□□□ -1.08
SF3B1-201ENST00000335508 AKAP17AQ02040 695 aaKnown RBP8.29□□□□□ -1.08
SF3B1-201ENST00000335508 KRT32Q14532 448 aa8.29□□□□□ -1.08
SF3B1-201ENST00000335508 SART3Q15020 963 aaKnown RBP8.29□□□□□ -1.08
SF3B1-201ENST00000335508 ANKRD44Q8N8A2 993 aa8.29□□□□□ -1.08
SF3B1-201ENST00000335508 CDC5LQ99459 802 aaKnown RBP8.29□□□□□ -1.08
SF3B1-201ENST00000335508 KDM6BO15054 1643 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 APPP05067 770 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 PPP1R42Q7Z4L9 355 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 CHMP5Q9NZZ3 219 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 ZMYM4Q5VZL5 1548 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 ADGBQ8N7X0 1667 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 NBR1Q14596 966 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 TRIM44Q96DX7 344 aaPredicted RBP8.28□□□□□ -1.08
SF3B1-201ENST00000335508 CARD10Q9BWT7 1032 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 ECHDC1Q9NTX5 307 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 BTG4Q9NY30 223 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 MIS18AQ9NYP9 233 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 KDM5CP41229 1560 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 USP31Q70CQ4 1352 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 WASHC4Q2M389 1173 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 NBPF6Q5VWK0 638 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 NBPF4Q96M43 638 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 TRMT112Q9UI30 125 aaKnown RBP8.28□□□□□ -1.08
SF3B1-201ENST00000335508 ERVV-2B6SEH9 535 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 BMP2KLQ5H9B9 411 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 CWC25Q9NXE8 425 aaPredicted RBP8.28□□□□□ -1.08
SF3B1-201ENST00000335508 ISY1Q9ULR0 285 aaKnown RBP8.28□□□□□ -1.08
SF3B1-201ENST00000335508 IQGAP3Q86VI3 1631 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 DHX16O60231 1041 aaKnown RBP8.28□□□□□ -1.08
SF3B1-201ENST00000335508 ZNF790Q6PG37 636 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 BACH2Q9BYV9 841 aa8.28□□□□□ -1.08
SF3B1-201ENST00000335508 TECPR2O15040 1411 aa8.27□□□□□ -1.09
SF3B1-201ENST00000335508 RNMTO43148 476 aaKnown RBP8.27□□□□□ -1.09
SF3B1-201ENST00000335508 COPS6Q7L5N1 327 aa8.27□□□□□ -1.09
SF3B1-201ENST00000335508 UBE3BQ7Z3V4 1068 aa8.27□□□□□ -1.09
SF3B1-201ENST00000335508 SMC5Q8IY18 1101 aa8.27□□□□□ -1.09
SF3B1-201ENST00000335508 EXOC6BQ9Y2D4 811 aa8.27□□□□□ -1.09
SF3B1-201ENST00000335508 PAXIP1Q6ZW49 1069 aaPredicted RBP8.27□□□□□ -1.09
SF3B1-201ENST00000335508 MX1P20591 662 aa8.27□□□□□ -1.09
SF3B1-201ENST00000335508 PARP10Q53GL7 1025 aa8.27□□□□□ -1.09
SF3B1-201ENST00000335508 C8orf58Q8NAV2 365 aa8.27□□□□□ -1.09
SF3B1-201ENST00000335508 FAM184AQ8NB25 1140 aa8.27□□□□□ -1.09
SF3B1-201ENST00000335508 UNC13BO14795 1591 aa8.27□□□□□ -1.09
SF3B1-201ENST00000335508 NFATC2IPQ8NCF5 419 aa8.26□□□□□ -1.09
SF3B1-201ENST00000335508 WDR17Q8IZU2 1322 aa8.26□□□□□ -1.09
SF3B1-201ENST00000335508 GRM8O00222 908 aa8.26□□□□□ -1.09
SF3B1-201ENST00000335508 XAGE3Q8WTP9 111 aa8.26□□□□□ -1.09
SF3B1-201ENST00000335508 LDHAL6AQ6ZMR3 332 aa8.26□□□□□ -1.09
SF3B1-201ENST00000335508 ZBTB3Q9H5J0 574 aa8.26□□□□□ -1.09
SF3B1-201ENST00000335508 CDC42BPAQ5VT25 1732 aa8.26□□□□□ -1.09
SF3B1-201ENST00000335508 ERICH2A1L162 156 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 F6X3S4 739 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 SLC3A2P08195 630 aaKnown RBP8.25□□□□□ -1.09
SF3B1-201ENST00000335508 RNF17Q9BXT8 1623 aaKnown RBP8.25□□□□□ -1.09
SF3B1-201ENST00000335508 SPATA31A3Q5VYP0 1347 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 PTCH1Q13635 1447 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 IL15P40933 162 aaPredicted RBP8.25□□□□□ -1.09
SF3B1-201ENST00000335508 SKOR2Q2VWA4 1001 aaPredicted RBP8.25□□□□□ -1.09
SF3B1-201ENST00000335508 C8orf37Q96NL8 207 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 ANKRD18BA2A2Z9 1011 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 ANKRD1Q15327 319 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 AACSQ86V21 672 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 NCOA3Q9Y6Q9 1424 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 DDX11L8A8MPP1 907 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 TPTE2Q6XPS3 522 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 LDHCP07864 332 aa8.25□□□□□ -1.09
SF3B1-201ENST00000335508 DIP2CQ9Y2E4 1556 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 KCNA4P22459 653 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 L1TD1Q5T7N2 865 aaKnown RBP8.24□□□□□ -1.09
SF3B1-201ENST00000335508 ZNF496Q96IT1 587 aaPredicted RBP8.24□□□□□ -1.09
SF3B1-201ENST00000335508 NLRP3Q96P20 1036 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 SF3A1Q15459 793 aaKnown RBP8.24□□□□□ -1.09
SF3B1-201ENST00000335508 METTL24Q5JXM2 366 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 CIZ1Q9ULV3 898 aaPredicted RBP8.24□□□□□ -1.09
SF3B1-201ENST00000335508 SH3TC1Q8TE82 1336 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 SAFBQ15424 915 aaKnown RBP eCLIP8.24□□□□□ -1.09
SF3B1-201ENST00000335508 MRPL50Q8N5N7 158 aaKnown RBP8.24□□□□□ -1.09
SF3B1-201ENST00000335508 AK7Q96M32 723 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 IL1RAPL2Q9NP60 686 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 LRRFIP2Q9Y608 721 aaKnown RBP8.24□□□□□ -1.09
SF3B1-201ENST00000335508 GOLGA6L6A8MZA4 724 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 BRINP3Q76B58 766 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 MYD88Q99836 296 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 DCTPP1Q9H773 170 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 C1orf115Q9H7X2 142 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 FAM177BA6PVY3 158 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 NEK4P51957 841 aa8.24□□□□□ -1.09
SF3B1-201ENST00000335508 ATP8B2P98198 1209 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms