RNA–Protein interactions for RNA: ENST00000334654.4

CHGA-202, Transcript of chromogranin A, humanhuman

TSL 1 (best) BASIC

Gene CHGA, Length 1,474 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHGA-202ENST00000334654 SPINK5Q9NQ38 1064 aaPredicted RBP22.92■■□□□ 1.26
CHGA-202ENST00000334654 ZBED9Q6R2W3 1325 aa22.91■■□□□ 1.26
CHGA-202ENST00000334654 ZNF853P0CG23 659 aa22.91■■□□□ 1.26
CHGA-202ENST00000334654 TAF7Q15545 349 aaPredicted RBP22.91■■□□□ 1.26
CHGA-202ENST00000334654 YTHDC1Q96MU7 727 aaKnown RBP22.9■■□□□ 1.26
CHGA-202ENST00000334654 IL16Q14005 1332 aa22.89■■□□□ 1.25
CHGA-202ENST00000334654 SYTL4Q96C24 671 aaPredicted RBP22.89■■□□□ 1.25
CHGA-202ENST00000334654 TMOD3Q9NYL9 352 aa22.89■■□□□ 1.25
CHGA-202ENST00000334654 BTAF1O14981 1849 aa22.88■■□□□ 1.25
CHGA-202ENST00000334654 CHL1O00533 1208 aa22.88■■□□□ 1.25
CHGA-202ENST00000334654 MIS18AQ9NYP9 233 aa22.88■■□□□ 1.25
CHGA-202ENST00000334654 TRIM37O94972 964 aa22.87■■□□□ 1.25
CHGA-202ENST00000334654 ILDR2Q71H61 639 aa22.87■■□□□ 1.25
CHGA-202ENST00000334654 CFAP44Q96MT7 982 aa22.87■■□□□ 1.25
CHGA-202ENST00000334654 BCL11BQ9C0K0 894 aaPredicted RBP22.87■■□□□ 1.25
CHGA-202ENST00000334654 PAPPAQ13219 1627 aa22.87■■□□□ 1.25
CHGA-202ENST00000334654 KDM3BQ7LBC6 1761 aa22.87■■□□□ 1.25
CHGA-202ENST00000334654 CALD1Q05682 793 aaKnown RBP22.86■■□□□ 1.25
CHGA-202ENST00000334654 IFT57Q9NWB7 429 aa22.86■■□□□ 1.25
CHGA-202ENST00000334654 CDCA7LQ96GN5 454 aa22.85■■□□□ 1.25
CHGA-202ENST00000334654 BTBD11A6QL63 1104 aa22.85■■□□□ 1.25
CHGA-202ENST00000334654 KCNQ3O43525 872 aa22.85■■□□□ 1.25
CHGA-202ENST00000334654 GOLGA2Q08379 1002 aa22.85■■□□□ 1.25
CHGA-202ENST00000334654 SLC39A6Q13433 755 aa22.85■■□□□ 1.25
CHGA-202ENST00000334654 ATG3Q9NT62 314 aa22.85■■□□□ 1.25
CHGA-202ENST00000334654 BABAM1Q9NWV8 329 aa22.85■■□□□ 1.25
CHGA-202ENST00000334654 ASAP1Q9ULH1 1129 aa22.85■■□□□ 1.25
CHGA-202ENST00000334654 GNAI1P63096 354 aa22.84■■□□□ 1.25
CHGA-202ENST00000334654 TNS1Q9HBL0 1735 aaKnown RBP22.83■■□□□ 1.25
CHGA-202ENST00000334654 SLFN5Q08AF3 891 aa22.83■■□□□ 1.25
CHGA-202ENST00000334654 TRMT2AQ8IZ69 625 aaKnown RBP22.83■■□□□ 1.25
CHGA-202ENST00000334654 MBIPQ9NS73 344 aa22.83■■□□□ 1.25
CHGA-202ENST00000334654 LAS1LQ9Y4W2 734 aaKnown RBP22.83■■□□□ 1.25
CHGA-202ENST00000334654 UBR2Q8IWV8 1755 aa22.82■■□□□ 1.24
CHGA-202ENST00000334654 ZNF790Q6PG37 636 aa22.82■■□□□ 1.24
CHGA-202ENST00000334654 TSR2Q969E8 191 aaKnown RBP22.81■■□□□ 1.24
CHGA-202ENST00000334654 TSPYL4Q9UJ04 414 aa22.81■■□□□ 1.24
CHGA-202ENST00000334654 KCPQ6ZWJ8 1503 aa22.8■■□□□ 1.24
CHGA-202ENST00000334654 E9PSI1 815 aa22.79■■□□□ 1.24
CHGA-202ENST00000334654 FANCIQ9NVI1 1328 aa22.78■■□□□ 1.24
CHGA-202ENST00000334654 HEG1Q9ULI3 1381 aa22.78■■□□□ 1.24
CHGA-202ENST00000334654 EIF4A1P60842 406 aaKnown RBP22.78■■□□□ 1.24
CHGA-202ENST00000334654 DUSP27Q5VZP5 1158 aa22.78■■□□□ 1.24
CHGA-202ENST00000334654 LY75O60449 1722 aa22.77■■□□□ 1.24
CHGA-202ENST00000334654 ZNF496Q96IT1 587 aaPredicted RBP22.77■■□□□ 1.24
CHGA-202ENST00000334654 SLC4A9Q96Q91 983 aa22.77■■□□□ 1.24
CHGA-202ENST00000334654 SMARCC1Q92922 1105 aaPredicted RBP22.76■■□□□ 1.23
CHGA-202ENST00000334654 PALLDQ8WX93 1383 aa22.76■■□□□ 1.23
CHGA-202ENST00000334654 KRT24Q2M2I5 525 aa22.75■■□□□ 1.23
CHGA-202ENST00000334654 MYH16Q9H6N6 1097 aa22.75■■□□□ 1.23
CHGA-202ENST00000334654 PLSCR1O15162 318 aa22.74■■□□□ 1.23
CHGA-202ENST00000334654 PTCD1O75127 700 aaKnown RBP22.74■■□□□ 1.23
CHGA-202ENST00000334654 APBA3O96018 575 aa22.74■■□□□ 1.23
CHGA-202ENST00000334654 TTC5Q8N0Z6 440 aa22.74■■□□□ 1.23
CHGA-202ENST00000334654 C8orf58Q8NAV2 365 aa22.73■■□□□ 1.23
CHGA-202ENST00000334654 FMNL2Q96PY5 1086 aa22.73■■□□□ 1.23
CHGA-202ENST00000334654 ZNF831Q5JPB2 1677 aa22.72■■□□□ 1.23
CHGA-202ENST00000334654 PROM2Q8N271 834 aa22.72■■□□□ 1.23
CHGA-202ENST00000334654 UPF1Q92900 1129 aaKnown RBP eCLIP22.72■■□□□ 1.23
CHGA-202ENST00000334654 LOC102724428A0A0B4J2F2 783 aa22.71■■□□□ 1.23
CHGA-202ENST00000334654 PRAMEF22A3QJZ6 481 aa22.71■■□□□ 1.23
CHGA-202ENST00000334654 GIGYF1O75420 1035 aaPredicted RBP22.71■■□□□ 1.23
CHGA-202ENST00000334654 SIK1P57059 783 aa22.71■■□□□ 1.23
CHGA-202ENST00000334654 EXOSC9Q06265 439 aaKnown RBP22.71■■□□□ 1.23
CHGA-202ENST00000334654 CCDC125Q86Z20 511 aa22.71■■□□□ 1.23
CHGA-202ENST00000334654 TSPYL6Q8N831 410 aa22.71■■□□□ 1.23
CHGA-202ENST00000334654 RBM42Q9BTD8 480 aaKnown RBP22.71■■□□□ 1.23
CHGA-202ENST00000334654 C5P01031 1676 aa22.71■■□□□ 1.23
CHGA-202ENST00000334654 RGPD3A6NKT7 1758 aaPredicted RBP22.71■■□□□ 1.23
CHGA-202ENST00000334654 RGPD4Q7Z3J3 1758 aa22.71■■□□□ 1.23
CHGA-202ENST00000334654 TJP1Q07157 1748 aa22.7■■□□□ 1.22
CHGA-202ENST00000334654 CICQ96RK0 1608 aaPredicted RBP22.7■■□□□ 1.22
CHGA-202ENST00000334654 VSIG10Q8N0Z9 540 aa22.7■■□□□ 1.22
CHGA-202ENST00000334654 KCNQ4P56696 695 aa22.68■■□□□ 1.22
CHGA-202ENST00000334654 CAMKK2Q96RR4 588 aa22.68■■□□□ 1.22
CHGA-202ENST00000334654 LRRC4BQ9NT99 713 aa22.68■■□□□ 1.22
CHGA-202ENST00000334654 TAF1LQ8IZX4 1826 aa22.68■■□□□ 1.22
CHGA-202ENST00000334654 ITPK1Q13572 414 aa22.67■■□□□ 1.22
CHGA-202ENST00000334654 ELL2O00472 640 aaPredicted RBP22.66■■□□□ 1.22
CHGA-202ENST00000334654 SNRPA1P09661 255 aaKnown RBP22.66■■□□□ 1.22
CHGA-202ENST00000334654 TXNRD1Q16881 649 aa22.66■■□□□ 1.22
CHGA-202ENST00000334654 USP16Q9Y5T5 823 aa22.66■■□□□ 1.22
CHGA-202ENST00000334654 VAMP4O75379 141 aa22.66■■□□□ 1.22
CHGA-202ENST00000334654 ATP6V1AP38606 617 aa22.66■■□□□ 1.22
CHGA-202ENST00000334654 EN1Q05925 392 aaPredicted RBP22.66■■□□□ 1.22
CHGA-202ENST00000334654 DEFB132Q7Z7B7 95 aa22.66■■□□□ 1.22
CHGA-202ENST00000334654 DNAJC10Q8IXB1 793 aa22.66■■□□□ 1.22
CHGA-202ENST00000334654 COL5A3P25940 1745 aaPredicted RBP22.65■■□□□ 1.22
CHGA-202ENST00000334654 SF3B2Q13435 895 aaKnown RBP22.65■■□□□ 1.22
CHGA-202ENST00000334654 CCNL1Q9UK58 526 aaPredicted RBP22.65■■□□□ 1.22
CHGA-202ENST00000334654 HOXB7P09629 217 aa22.64■■□□□ 1.21
CHGA-202ENST00000334654 EZH2Q15910 746 aaKnown RBP22.64■■□□□ 1.21
CHGA-202ENST00000334654 TWISTNBQ3B726 338 aaPredicted RBP22.64■■□□□ 1.21
CHGA-202ENST00000334654 LAMB4A4D0S4 1761 aa22.64■■□□□ 1.21
CHGA-202ENST00000334654 MYH14Q7Z406 1995 aaKnown RBP22.63■■□□□ 1.21
CHGA-202ENST00000334654 BAG6P46379 1132 aa22.63■■□□□ 1.21
CHGA-202ENST00000334654 SLC27A3Q5K4L6 730 aa22.63■■□□□ 1.21
CHGA-202ENST00000334654 CYP19A1P11511 503 aaPredicted RBP22.62■■□□□ 1.21
CHGA-202ENST00000334654 LINC00116Q8NCU8 138 aa22.62■■□□□ 1.21
CHGA-202ENST00000334654 SOS1Q07889 1333 aaPredicted RBP22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms