RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 FIBPO43427 364 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 ESF1Q9H501 851 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 EXOC6BQ9Y2D4 811 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 ZNF853P0CG23 659 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 MAPK8IP2Q13387 824 aaPredicted RBP16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 UVSSAQ2YD98 709 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 IPO4Q8TEX9 1081 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 CFAP44Q96MT7 982 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 TMEM51Q9NW97 253 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 IFT57Q9NWB7 429 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 POLKQ9UBT6 870 aa16.23■□□□□ 0.19
CCDC88C-201ENST00000331194 CCDC183Q5T5S1 534 aa16.22■□□□□ 0.19
CCDC88C-201ENST00000331194 IL25Q9H293 177 aa16.22■□□□□ 0.19
CCDC88C-201ENST00000331194 EMILIN1Q9Y6C2 1016 aa16.22■□□□□ 0.19
CCDC88C-201ENST00000331194 FAM184AQ8NB25 1140 aa16.22■□□□□ 0.19
CCDC88C-201ENST00000331194 ANKRD7Q92527 254 aa16.22■□□□□ 0.19
CCDC88C-201ENST00000331194 MX1P20591 662 aa16.21■□□□□ 0.19
CCDC88C-201ENST00000331194 ESYT1Q9BSJ8 1104 aa16.21■□□□□ 0.19
CCDC88C-201ENST00000331194 MSH6P52701 1360 aa16.21■□□□□ 0.19
CCDC88C-201ENST00000331194 DEPDC5O75140 1603 aa16.21■□□□□ 0.19
CCDC88C-201ENST00000331194 TRIM6-TRIM34B2RNG4 842 aa16.21■□□□□ 0.19
CCDC88C-201ENST00000331194 CABP1Q9NZU7 370 aa16.21■□□□□ 0.19
CCDC88C-201ENST00000331194 CHMP3Q9Y3E7 222 aa16.21■□□□□ 0.19
CCDC88C-201ENST00000331194 EFCAB6Q5THR3 1501 aa16.21■□□□□ 0.18
CCDC88C-201ENST00000331194 DIP2BQ9P265 1576 aa16.2■□□□□ 0.18
CCDC88C-201ENST00000331194 DIP2CQ9Y2E4 1556 aa16.2■□□□□ 0.18
CCDC88C-201ENST00000331194 FAM135BQ49AJ0 1406 aa16.2■□□□□ 0.18
CCDC88C-201ENST00000331194 SLC4A10Q6U841 1118 aa16.2■□□□□ 0.18
CCDC88C-201ENST00000331194 UNC5CLQ8IV45 518 aa16.2■□□□□ 0.18
CCDC88C-201ENST00000331194 RPAP2Q8IXW5 612 aaPredicted RBP16.2■□□□□ 0.18
CCDC88C-201ENST00000331194 SETBP1Q9Y6X0 1596 aa16.2■□□□□ 0.18
CCDC88C-201ENST00000331194 RTL1A6NKG5 1358 aa16.2■□□□□ 0.18
CCDC88C-201ENST00000331194 PTGS1P23219 599 aa16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 NCBP1Q09161 790 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 TERF2IPQ9NYB0 399 aa16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 F6X3S4 739 aa16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 LRMPQ12912 555 aa16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 CHAF1AQ13111 956 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 PNPLA6Q8IY17 1366 aa16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 VWDEQ8N2E2 1590 aa16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 ABCC3O15438 1527 aa16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 C16orf45Q96MC5 204 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 DIAPH3Q9NSV4 1193 aa16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 ZRANB1Q9UGI0 708 aa16.19■□□□□ 0.18
CCDC88C-201ENST00000331194 WDR33Q9C0J8 1336 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-201ENST00000331194 ARHGEF40Q8TER5 1519 aa16.18■□□□□ 0.18
CCDC88C-201ENST00000331194 INTS4Q96HW7 963 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-201ENST00000331194 REREQ9P2R6 1566 aa16.17■□□□□ 0.18
CCDC88C-201ENST00000331194 RPAP1Q9BWH6 1393 aaPredicted RBP16.17■□□□□ 0.18
CCDC88C-201ENST00000331194 MAP4K4O95819 1239 aaPredicted RBP16.17■□□□□ 0.18
CCDC88C-201ENST00000331194 CTIFO43310 598 aaKnown RBP16.17■□□□□ 0.18
CCDC88C-201ENST00000331194 MCM2P49736 904 aa16.17■□□□□ 0.18
CCDC88C-201ENST00000331194 PRAM1Q96QH2 718 aa16.17■□□□□ 0.18
CCDC88C-201ENST00000331194 NRBP1Q9UHY1 535 aa16.17■□□□□ 0.18
CCDC88C-201ENST00000331194 CPA1P15085 419 aa16.17■□□□□ 0.18
CCDC88C-201ENST00000331194 CHMLP26374 656 aa16.16■□□□□ 0.18
CCDC88C-201ENST00000331194 FUCA2Q9BTY2 467 aa16.16■□□□□ 0.18
CCDC88C-201ENST00000331194 MIS18AQ9NYP9 233 aa16.16■□□□□ 0.18
CCDC88C-201ENST00000331194 GLI2P10070 1586 aa16.15■□□□□ 0.18
CCDC88C-201ENST00000331194 CAMK4Q16566 473 aa16.15■□□□□ 0.18
CCDC88C-201ENST00000331194 ADGRB3O60242 1522 aa16.15■□□□□ 0.18
CCDC88C-201ENST00000331194 RICTORQ6R327 1708 aa16.15■□□□□ 0.18
CCDC88C-201ENST00000331194 SYT1P21579 422 aa16.14■□□□□ 0.18
CCDC88C-201ENST00000331194 MCCP23508 829 aa16.14■□□□□ 0.18
CCDC88C-201ENST00000331194 DNM1Q05193 864 aaKnown RBP16.14■□□□□ 0.18
CCDC88C-201ENST00000331194 CTNNA3Q9UI47 895 aa16.14■□□□□ 0.18
CCDC88C-201ENST00000331194 CD163L1Q9NR16 1453 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 CAMSAP1Q5T5Y3 1602 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 NUTM2FA1L443 756 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 UBE2HP62256 183 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 G2E3Q7L622 706 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 PUS7Q96PZ0 661 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 RGS12O14924 1447 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 NEURL4Q96JN8 1562 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 ZSCAN22P10073 491 aaPredicted RBP16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 MCM10Q7L590 875 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 CCDC186Q7Z3E2 898 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 LUZP1Q86V48 1076 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 OGFRQ9NZT2 677 aa16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 V9GYY5 206 aaPredicted RBP16.14■□□□□ 0.17
CCDC88C-201ENST00000331194 SLC4A2P04920 1241 aa16.13■□□□□ 0.17
CCDC88C-201ENST00000331194 RRS1Q15050 365 aaKnown RBP16.13■□□□□ 0.17
CCDC88C-201ENST00000331194 HDGFL2Q7Z4V5 671 aaPredicted RBP16.13■□□□□ 0.17
CCDC88C-201ENST00000331194 WAPLQ7Z5K2 1190 aa16.13■□□□□ 0.17
CCDC88C-201ENST00000331194 SIGLEC1Q9BZZ2 1709 aa16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 VGFO15240 615 aaPredicted RBP16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 STX6O43752 255 aa16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 IL13P35225 146 aa16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 CDK19Q9BWU1 502 aa16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 DDX54Q8TDD1 881 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 ZNF592Q92610 1267 aa16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 OSBPL3Q9H4L5 887 aa16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 LARGE1O95461 756 aa16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 SLFN14P0C7P3 912 aa16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 CDK11BP21127 795 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 PPLO60437 1756 aa16.12■□□□□ 0.17
CCDC88C-201ENST00000331194 FAM173BQ6P4H8 233 aa16.11■□□□□ 0.17
CCDC88C-201ENST00000331194 DRC7Q8IY82 874 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms