RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 CHAMP1Q96JM3 812 aa22.11■■□□□ 1.13
CLSTN3-202ENST00000331148 CCDC94Q9BW85 323 aaPredicted RBP22.11■■□□□ 1.13
CLSTN3-202ENST00000331148 VAMP4O75379 141 aa22.11■■□□□ 1.13
CLSTN3-202ENST00000331148 HSPA2P54652 639 aa22.1■■□□□ 1.13
CLSTN3-202ENST00000331148 KIAA2012Q0VF49 1180 aa22.1■■□□□ 1.13
CLSTN3-202ENST00000331148 PRDM10Q9NQV6 1147 aa22.1■■□□□ 1.13
CLSTN3-202ENST00000331148 MBD3O95983 291 aa22.1■■□□□ 1.13
CLSTN3-202ENST00000331148 PROSER2Q86WR7 435 aaPredicted RBP22.1■■□□□ 1.13
CLSTN3-202ENST00000331148 RNF214Q8ND24 703 aa22.1■■□□□ 1.13
CLSTN3-202ENST00000331148 EMILIN1Q9Y6C2 1016 aa22.1■■□□□ 1.13
CLSTN3-202ENST00000331148 LRRC7Q96NW7 1537 aa22.1■■□□□ 1.13
CLSTN3-202ENST00000331148 OVOS2A0A0J9YW53 1432 aa22.08■■□□□ 1.13
CLSTN3-202ENST00000331148 OVOS2Q6IE36 1432 aa22.08■■□□□ 1.13
CLSTN3-202ENST00000331148 PTMAP06454 111 aaKnown RBP22.08■■□□□ 1.13
CLSTN3-202ENST00000331148 MYRIPQ8NFW9 859 aa22.08■■□□□ 1.13
CLSTN3-202ENST00000331148 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.08■■□□□ 1.13
CLSTN3-202ENST00000331148 TSPYL6Q8N831 410 aa22.08■■□□□ 1.12
CLSTN3-202ENST00000331148 PHF8Q9UPP1 1060 aa22.08■■□□□ 1.12
CLSTN3-202ENST00000331148 DCTPP1Q9H773 170 aa22.07■■□□□ 1.12
CLSTN3-202ENST00000331148 RRS1Q15050 365 aaKnown RBP22.06■■□□□ 1.12
CLSTN3-202ENST00000331148 UTP14CQ5TAP6 766 aaKnown RBP22.06■■□□□ 1.12
CLSTN3-202ENST00000331148 TSPY26PQ9H489 355 aa22.06■■□□□ 1.12
CLSTN3-202ENST00000331148 CDK12Q9NYV4 1490 aaPredicted RBP22.06■■□□□ 1.12
CLSTN3-202ENST00000331148 FCHSD2O94868 740 aa22.05■■□□□ 1.12
CLSTN3-202ENST00000331148 DMTNQ08495 405 aa22.05■■□□□ 1.12
CLSTN3-202ENST00000331148 C16orf71Q8IYS4 520 aaPredicted RBP22.05■■□□□ 1.12
CLSTN3-202ENST00000331148 CASC1Q6TDU7 716 aa22.05■■□□□ 1.12
CLSTN3-202ENST00000331148 USP31Q70CQ4 1352 aa22.04■■□□□ 1.12
CLSTN3-202ENST00000331148 FOXD4L5Q5VV16 416 aaPredicted RBP22.04■■□□□ 1.12
CLSTN3-202ENST00000331148 FOXD4L4Q8WXT5 416 aaPredicted RBP22.04■■□□□ 1.12
CLSTN3-202ENST00000331148 SDSP20132 328 aa22.04■■□□□ 1.12
CLSTN3-202ENST00000331148 PRKAR2BP31323 418 aa22.04■■□□□ 1.12
CLSTN3-202ENST00000331148 ESCO1Q5FWF5 840 aa22.04■■□□□ 1.12
CLSTN3-202ENST00000331148 ZHX1Q9UKY1 873 aaPredicted RBP22.04■■□□□ 1.12
CLSTN3-202ENST00000331148 OTUD7AQ8TE49 926 aaPredicted RBP22.03■■□□□ 1.12
CLSTN3-202ENST00000331148 THUMPD2Q9BTF0 503 aaKnown RBP22.03■■□□□ 1.12
CLSTN3-202ENST00000331148 API5Q9BZZ5 524 aaKnown RBP22.03■■□□□ 1.12
CLSTN3-202ENST00000331148 PRIMPOLQ96LW4 560 aa22.02■■□□□ 1.12
CLSTN3-202ENST00000331148 KIF24Q5T7B8 1368 aa22.02■■□□□ 1.12
CLSTN3-202ENST00000331148 REC8O95072 547 aa22.01■■□□□ 1.11
CLSTN3-202ENST00000331148 IL13P35225 146 aa22.01■■□□□ 1.11
CLSTN3-202ENST00000331148 C19orf44Q9H6X5 657 aa22.01■■□□□ 1.11
CLSTN3-202ENST00000331148 ELL2O00472 640 aaPredicted RBP22.01■■□□□ 1.11
CLSTN3-202ENST00000331148 ZSCAN20P17040 1043 aaPredicted RBP22.01■■□□□ 1.11
CLSTN3-202ENST00000331148 DNTTIP2Q5QJE6 756 aaKnown RBP22.01■■□□□ 1.11
CLSTN3-202ENST00000331148 ZNF710Q8N1W2 664 aa22.01■■□□□ 1.11
CLSTN3-202ENST00000331148 IFT57Q9NWB7 429 aa22■■□□□ 1.11
CLSTN3-202ENST00000331148 BRD1O95696 1058 aa22■■□□□ 1.11
CLSTN3-202ENST00000331148 NLRP6P59044 892 aa22■■□□□ 1.11
CLSTN3-202ENST00000331148 GNAI1P63096 354 aa22■■□□□ 1.11
CLSTN3-202ENST00000331148 NFE2L2Q16236 605 aa22■■□□□ 1.11
CLSTN3-202ENST00000331148 JARID2Q92833 1246 aaPredicted RBP22■■□□□ 1.11
CLSTN3-202ENST00000331148 GTF2F1P35269 517 aaKnown RBP eCLIP21.99■■□□□ 1.112e-7■■■■■ 29.2
CLSTN3-202ENST00000331148 PIBF1Q8WXW3 757 aa21.99■■□□□ 1.11
CLSTN3-202ENST00000331148 SYAP1Q96A49 352 aaPredicted RBP21.99■■□□□ 1.11
CLSTN3-202ENST00000331148 MBIPQ9NS73 344 aa21.99■■□□□ 1.11
CLSTN3-202ENST00000331148 PIK3C2AO00443 1686 aa21.99■■□□□ 1.11
CLSTN3-202ENST00000331148 TWISTNBQ3B726 338 aaPredicted RBP21.99■■□□□ 1.11
CLSTN3-202ENST00000331148 ATP10DQ9P241 1426 aa21.98■■□□□ 1.11
CLSTN3-202ENST00000331148 ZBTB7CA1YPR0 619 aa21.98■■□□□ 1.11
CLSTN3-202ENST00000331148 HMGN5P82970 282 aaKnown RBP21.98■■□□□ 1.11
CLSTN3-202ENST00000331148 TMX3Q96JJ7 454 aa21.98■■□□□ 1.11
CLSTN3-202ENST00000331148 PSME1Q06323 249 aa21.97■■□□□ 1.11
CLSTN3-202ENST00000331148 ANKRD44Q8N8A2 993 aa21.97■■□□□ 1.11
CLSTN3-202ENST00000331148 ABTB2Q8N961 1025 aa21.97■■□□□ 1.11
CLSTN3-202ENST00000331148 TSC1Q92574 1164 aa21.97■■□□□ 1.11
CLSTN3-202ENST00000331148 USP54Q70EL1 1684 aa21.97■■□□□ 1.11
CLSTN3-202ENST00000331148 ERC2O15083 957 aa21.97■■□□□ 1.11
CLSTN3-202ENST00000331148 SOX12O15370 315 aa21.97■■□□□ 1.11
CLSTN3-202ENST00000331148 ZNF853P0CG23 659 aa21.97■■□□□ 1.11
CLSTN3-202ENST00000331148 STRCP1A6NGW2 1772 aa21.96■■□□□ 1.11
CLSTN3-202ENST00000331148 PHACTR3Q96KR7 559 aa21.96■■□□□ 1.11
CLSTN3-202ENST00000331148 ORAI2Q96SN7 254 aa21.96■■□□□ 1.11
CLSTN3-202ENST00000331148 TMEM94Q12767 1356 aa21.96■■□□□ 1.11
CLSTN3-202ENST00000331148 PHF14O94880 888 aa21.95■■□□□ 1.1
CLSTN3-202ENST00000331148 NOLC1Q14978 699 aaKnown RBP eCLIP21.95■■□□□ 1.1
CLSTN3-202ENST00000331148 SMARCA5O60264 1052 aaPredicted RBP21.94■■□□□ 1.1
CLSTN3-202ENST00000331148 NEK4P51957 841 aa21.94■■□□□ 1.1
CLSTN3-202ENST00000331148 C8orf58Q8NAV2 365 aa21.94■■□□□ 1.1
CLSTN3-202ENST00000331148 STRCQ7RTU9 1775 aa21.94■■□□□ 1.1
CLSTN3-202ENST00000331148 HMOX1P09601 288 aa21.94■■□□□ 1.1
CLSTN3-202ENST00000331148 NUTM2GQ5VZR2 741 aa21.94■■□□□ 1.1
CLSTN3-202ENST00000331148 ZNF830Q96NB3 372 aaPredicted RBP21.94■■□□□ 1.1
CLSTN3-202ENST00000331148 MAP3K19Q56UN5 1328 aa21.93■■□□□ 1.1
CLSTN3-202ENST00000331148 CUL4AQ13619 759 aa21.93■■□□□ 1.1
CLSTN3-202ENST00000331148 UVSSAQ2YD98 709 aa21.93■■□□□ 1.1
CLSTN3-202ENST00000331148 FAM184AQ8NB25 1140 aa21.93■■□□□ 1.1
CLSTN3-202ENST00000331148 ATF3P18847 181 aa21.92■■□□□ 1.1
CLSTN3-202ENST00000331148 MCM2P49736 904 aa21.92■■□□□ 1.1
CLSTN3-202ENST00000331148 CEP85Q6P2H3 762 aa21.92■■□□□ 1.1
CLSTN3-202ENST00000331148 MPNDQ8N594 471 aa21.92■■□□□ 1.1
CLSTN3-202ENST00000331148 EIF4A2Q14240 407 aaKnown RBP21.92■■□□□ 1.1
CLSTN3-202ENST00000331148 HSP90AB2PQ58FF8 381 aa21.92■■□□□ 1.1
CLSTN3-202ENST00000331148 RPAP2Q8IXW5 612 aaPredicted RBP21.92■■□□□ 1.1
CLSTN3-202ENST00000331148 FOXO3O43524 673 aa21.91■■□□□ 1.1
CLSTN3-202ENST00000331148 PEAK1Q9H792 1746 aa21.91■■□□□ 1.1
CLSTN3-202ENST00000331148 USP25Q9UHP3 1055 aa21.91■■□□□ 1.1
CLSTN3-202ENST00000331148 C1orf167Q5SNV9 1468 aa21.91■■□□□ 1.1
CLSTN3-202ENST00000331148 APBB1O00213 710 aa21.91■■□□□ 1.1
CLSTN3-202ENST00000331148 CBX1P83916 185 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms