RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 MRC1P22897 1456 aa32.14■■■□□ 2.74
HOXC9-201ENST00000303450 THUMPD2Q9BTF0 503 aaKnown RBP32.13■■■□□ 2.73
HOXC9-201ENST00000303450 BAG6P46379 1132 aa32.12■■■□□ 2.73
HOXC9-201ENST00000303450 SALL2Q9Y467 1007 aaPredicted RBP32.1■■■□□ 2.73
HOXC9-201ENST00000303450 SOCS7O14512 581 aa32.09■■■□□ 2.73
HOXC9-201ENST00000303450 PLSCR1O15162 318 aa32.08■■■□□ 2.73
HOXC9-201ENST00000303450 NCBP3Q53F19 620 aaKnown RBP32.08■■■□□ 2.73
HOXC9-201ENST00000303450 SMARCC1Q92922 1105 aaPredicted RBP32.08■■■□□ 2.73
HOXC9-201ENST00000303450 ASAP1Q9ULH1 1129 aa32.08■■■□□ 2.73
HOXC9-201ENST00000303450 DEFB132Q7Z7B7 95 aa32.07■■■□□ 2.72
HOXC9-201ENST00000303450 SIPA1L3O60292 1781 aaPredicted RBP32.06■■■□□ 2.72
HOXC9-201ENST00000303450 EN1Q05925 392 aaPredicted RBP32.06■■■□□ 2.72
HOXC9-201ENST00000303450 TAF7Q15545 349 aaPredicted RBP32.06■■■□□ 2.72
HOXC9-201ENST00000303450 CCDC27Q2M243 656 aa32.06■■■□□ 2.72
HOXC9-201ENST00000303450 NGEFQ8N5V2 710 aa32.06■■■□□ 2.72
HOXC9-201ENST00000303450 ATG3Q9NT62 314 aa32.06■■■□□ 2.72
HOXC9-201ENST00000303450 BTBD11A6QL63 1104 aa32.05■■■□□ 2.72
HOXC9-201ENST00000303450 PALLDQ8WX93 1383 aa32.04■■■□□ 2.72
HOXC9-201ENST00000303450 WWC1Q8IX03 1113 aa32.03■■■□□ 2.72
HOXC9-201ENST00000303450 CALD1Q05682 793 aaKnown RBP32.02■■■□□ 2.72
HOXC9-201ENST00000303450 SLC39A6Q13433 755 aa32.02■■■□□ 2.72
HOXC9-201ENST00000303450 CAMKK2Q96RR4 588 aa32.01■■■□□ 2.72
HOXC9-201ENST00000303450 TTC5Q8N0Z6 440 aa32■■■□□ 2.71
HOXC9-201ENST00000303450 RGPD3A6NKT7 1758 aaPredicted RBP32■■■□□ 2.71
HOXC9-201ENST00000303450 RGPD4Q7Z3J3 1758 aa32■■■□□ 2.71
HOXC9-201ENST00000303450 EZH2Q15910 746 aaKnown RBP32■■■□□ 2.71
HOXC9-201ENST00000303450 ZNF790Q6PG37 636 aa31.99■■■□□ 2.71
HOXC9-201ENST00000303450 MIS18AQ9NYP9 233 aa31.99■■■□□ 2.71
HOXC9-201ENST00000303450 LAS1LQ9Y4W2 734 aaKnown RBP31.98■■■□□ 2.71
HOXC9-201ENST00000303450 PAPPAQ13219 1627 aa31.97■■■□□ 2.71
HOXC9-201ENST00000303450 PTCD1O75127 700 aaKnown RBP31.97■■■□□ 2.71
HOXC9-201ENST00000303450 TXNRD1Q16881 649 aa31.97■■■□□ 2.71
HOXC9-201ENST00000303450 RBM42Q9BTD8 480 aaKnown RBP31.97■■■□□ 2.71
HOXC9-201ENST00000303450 LY75O60449 1722 aa31.97■■■□□ 2.71
HOXC9-201ENST00000303450 LOC102724428A0A0B4J2F2 783 aa31.95■■■□□ 2.7
HOXC9-201ENST00000303450 SIK1P57059 783 aa31.95■■■□□ 2.7
HOXC9-201ENST00000303450 SLC27A3Q5K4L6 730 aa31.95■■■□□ 2.7
HOXC9-201ENST00000303450 PROM2Q8N271 834 aa31.95■■■□□ 2.7
HOXC9-201ENST00000303450 BABAM1Q9NWV8 329 aa31.95■■■□□ 2.7
HOXC9-201ENST00000303450 TSPYL4Q9UJ04 414 aa31.95■■■□□ 2.7
HOXC9-201ENST00000303450 CCNL1Q9UK58 526 aaPredicted RBP31.95■■■□□ 2.7
HOXC9-201ENST00000303450 KCNQ3O43525 872 aa31.93■■■□□ 2.7
HOXC9-201ENST00000303450 HNRNPUQ00839 825 aaKnown RBP eCLIP31.93■■■□□ 2.7
HOXC9-201ENST00000303450 WDR63Q8IWG1 891 aa31.93■■■□□ 2.7
HOXC9-201ENST00000303450 CFAP44Q96MT7 982 aa31.93■■■□□ 2.7
HOXC9-201ENST00000303450 IFT57Q9NWB7 429 aa31.92■■■□□ 2.7
HOXC9-201ENST00000303450 CHL1O00533 1208 aa31.91■■■□□ 2.7
HOXC9-201ENST00000303450 GNAI1P63096 354 aa31.91■■■□□ 2.7
HOXC9-201ENST00000303450 ATP6V1AP38606 617 aa31.9■■■□□ 2.7
HOXC9-201ENST00000303450 KCNQ4P56696 695 aa31.9■■■□□ 2.7
HOXC9-201ENST00000303450 KDM3BQ7LBC6 1761 aa31.9■■■□□ 2.7
HOXC9-201ENST00000303450 UBR2Q8IWV8 1755 aa31.9■■■□□ 2.7
HOXC9-201ENST00000303450 ZNF496Q96IT1 587 aaPredicted RBP31.9■■■□□ 2.7
HOXC9-201ENST00000303450 FMNL2Q96PY5 1086 aa31.9■■■□□ 2.7
HOXC9-201ENST00000303450 LRRC4BQ9NT99 713 aa31.9■■■□□ 2.7
HOXC9-201ENST00000303450 KCPQ6ZWJ8 1503 aa31.9■■■□□ 2.7
HOXC9-201ENST00000303450 IL16Q14005 1332 aa31.89■■■□□ 2.7
HOXC9-201ENST00000303450 ZNF853P0CG23 659 aa31.88■■■□□ 2.69
HOXC9-201ENST00000303450 ZNF521Q96K83 1311 aa31.87■■■□□ 2.69
HOXC9-201ENST00000303450 RREB1Q92766 1687 aa31.87■■■□□ 2.69
HOXC9-201ENST00000303450 SLC4A9Q96Q91 983 aa31.87■■■□□ 2.69
HOXC9-201ENST00000303450 VSIG10Q8N0Z9 540 aa31.85■■■□□ 2.69
HOXC9-201ENST00000303450 MBIPQ9NS73 344 aa31.85■■■□□ 2.69
HOXC9-201ENST00000303450 HMGB2P26583 209 aaKnown RBP31.85■■■□□ 2.69
HOXC9-201ENST00000303450 HEG1Q9ULI3 1381 aa31.84■■■□□ 2.69
HOXC9-201ENST00000303450 EIF4A1P60842 406 aaKnown RBP31.84■■■□□ 2.69
HOXC9-201ENST00000303450 ZNF831Q5JPB2 1677 aa31.83■■■□□ 2.69
HOXC9-201ENST00000303450 ITPK1Q13572 414 aa31.83■■■□□ 2.69
HOXC9-201ENST00000303450 NUP188Q5SRE5 1749 aa31.82■■■□□ 2.68
HOXC9-201ENST00000303450 GOLGA2Q08379 1002 aa31.81■■■□□ 2.68
HOXC9-201ENST00000303450 DNAJC10Q8IXB1 793 aa31.8■■■□□ 2.68
HOXC9-201ENST00000303450 C5P01031 1676 aa31.8■■■□□ 2.68
HOXC9-201ENST00000303450 TAF1LQ8IZX4 1826 aa31.8■■■□□ 2.68
HOXC9-201ENST00000303450 SNRPA1P09661 255 aaKnown RBP31.8■■■□□ 2.68
HOXC9-201ENST00000303450 LINC00116Q8NCU8 138 aa31.79■■■□□ 2.68
HOXC9-201ENST00000303450 TSR2Q969E8 191 aaKnown RBP31.79■■■□□ 2.68
HOXC9-201ENST00000303450 TEX13AQ9BXU3 409 aaPredicted RBP31.79■■■□□ 2.68
HOXC9-201ENST00000303450 MYH16Q9H6N6 1097 aa31.79■■■□□ 2.68
HOXC9-201ENST00000303450 NBPF14Q5TI25 921 aa31.78■■■□□ 2.68
HOXC9-201ENST00000303450 SPINK5Q9NQ38 1064 aaPredicted RBP31.78■■■□□ 2.68
HOXC9-201ENST00000303450 TJP1Q07157 1748 aa31.78■■■□□ 2.68
HOXC9-201ENST00000303450 CICQ96RK0 1608 aaPredicted RBP31.76■■■□□ 2.68
HOXC9-201ENST00000303450 GIGYF1O75420 1035 aaPredicted RBP31.75■■■□□ 2.67
HOXC9-201ENST00000303450 FANCIQ9NVI1 1328 aa31.75■■■□□ 2.67
HOXC9-201ENST00000303450 PRAMEF22A3QJZ6 481 aa31.75■■■□□ 2.67
HOXC9-201ENST00000303450 E9PSI1 815 aa31.75■■■□□ 2.67
HOXC9-201ENST00000303450 STARD3NLO95772 234 aa31.75■■■□□ 2.67
HOXC9-201ENST00000303450 ZBED9Q6R2W3 1325 aa31.74■■■□□ 2.67
HOXC9-201ENST00000303450 STK32BQ9NY57 414 aa31.74■■■□□ 2.67
HOXC9-201ENST00000303450 C4BP0C0L5 1744 aa31.73■■■□□ 2.67
HOXC9-201ENST00000303450 COL5A3P25940 1745 aaPredicted RBP31.73■■■□□ 2.67
HOXC9-201ENST00000303450 KRT24Q2M2I5 525 aa31.73■■■□□ 2.67
HOXC9-201ENST00000303450 ANO8Q9HCE9 1232 aaPredicted RBP31.73■■■□□ 2.67
HOXC9-201ENST00000303450 CYP19A1P11511 503 aaPredicted RBP31.72■■■□□ 2.67
HOXC9-201ENST00000303450 USP16Q9Y5T5 823 aa31.72■■■□□ 2.67
HOXC9-201ENST00000303450 AKT1S1Q96B36 256 aa31.71■■■□□ 2.67
HOXC9-201ENST00000303450 CDCA7LQ96GN5 454 aa31.71■■■□□ 2.67
HOXC9-201ENST00000303450 AK7Q96M32 723 aa31.71■■■□□ 2.67
HOXC9-201ENST00000303450 CRKLP46109 303 aaKnown RBP31.7■■■□□ 2.67
HOXC9-201ENST00000303450 SLFN5Q08AF3 891 aa31.7■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms