RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 EVC2Q86UK5 1308 aa16.23■□□□□ 0.19
SKA3-201ENST00000298260 PIK3R4Q99570 1358 aa16.23■□□□□ 0.19
SKA3-201ENST00000298260 IRX5P78411 483 aaPredicted RBP16.23■□□□□ 0.19
SKA3-201ENST00000298260 COL3A1P02461 1466 aaPredicted RBP16.23■□□□□ 0.19
SKA3-201ENST00000298260 DEPDC5O75140 1603 aa16.23■□□□□ 0.19
SKA3-201ENST00000298260 TRIM6-TRIM34B2RNG4 842 aa16.23■□□□□ 0.19
SKA3-201ENST00000298260 CEBPAP49715 358 aaPredicted RBP16.23■□□□□ 0.19
SKA3-201ENST00000298260 CAMK4Q16566 473 aa16.23■□□□□ 0.19
SKA3-201ENST00000298260 OGFRQ9NZT2 677 aa16.23■□□□□ 0.19
SKA3-201ENST00000298260 PDE1AP54750 535 aa16.22■□□□□ 0.19
SKA3-201ENST00000298260 IDI1Q13907 227 aa16.22■□□□□ 0.19
SKA3-201ENST00000298260 C14orf93Q9H972 538 aaKnown RBP16.22■□□□□ 0.19
SKA3-201ENST00000298260 KIAA1210Q9ULL0 1709 aa16.22■□□□□ 0.19
SKA3-201ENST00000298260 NPHP1O15259 732 aa16.22■□□□□ 0.19
SKA3-201ENST00000298260 CPA1P15085 419 aa16.22■□□□□ 0.19
SKA3-201ENST00000298260 BRPF1P55201 1214 aaPredicted RBP16.22■□□□□ 0.19
SKA3-201ENST00000298260 UNC5CLQ8IV45 518 aa16.22■□□□□ 0.19
SKA3-201ENST00000298260 IFT57Q9NWB7 429 aa16.22■□□□□ 0.19
SKA3-201ENST00000298260 SIGLEC1Q9BZZ2 1709 aa16.22■□□□□ 0.19
SKA3-201ENST00000298260 MINK1Q8N4C8 1332 aaPredicted RBP16.21■□□□□ 0.19
SKA3-201ENST00000298260 ATP10DQ9P241 1426 aa16.21■□□□□ 0.19
SKA3-201ENST00000298260 MROH2AA6NES4 1674 aa16.21■□□□□ 0.19
SKA3-201ENST00000298260 MAP4K4O95819 1239 aaPredicted RBP16.21■□□□□ 0.19
SKA3-201ENST00000298260 CCDC186Q7Z3E2 898 aa16.21■□□□□ 0.19
SKA3-201ENST00000298260 LUZP1Q86V48 1076 aa16.21■□□□□ 0.19
SKA3-201ENST00000298260 ESYT1Q9BSJ8 1104 aa16.21■□□□□ 0.19
SKA3-201ENST00000298260 CDK11BP21127 795 aaKnown RBP16.2■□□□□ 0.18
SKA3-201ENST00000298260 API5Q9BZZ5 524 aaKnown RBP16.2■□□□□ 0.18
SKA3-201ENST00000298260 MSH6P52701 1360 aa16.2■□□□□ 0.18
SKA3-201ENST00000298260 TET3O43151 1660 aa16.2■□□□□ 0.18
SKA3-201ENST00000298260 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.2■□□□□ 0.18
SKA3-201ENST00000298260 SLC4A10Q6U841 1118 aa16.2■□□□□ 0.18
SKA3-201ENST00000298260 RPAP1Q9BWH6 1393 aaPredicted RBP16.2■□□□□ 0.18
SKA3-201ENST00000298260 LRRC7Q96NW7 1537 aa16.2■□□□□ 0.18
SKA3-201ENST00000298260 NFE2L2Q16236 605 aa16.19■□□□□ 0.18
SKA3-201ENST00000298260 CHMP4AQ9BY43 222 aa16.19■□□□□ 0.18
SKA3-201ENST00000298260 WDR33Q9C0J8 1336 aaKnown RBP16.19■□□□□ 0.18
SKA3-201ENST00000298260 MYOM2P54296 1465 aa16.19■□□□□ 0.18
SKA3-201ENST00000298260 F6X3S4 739 aa16.19■□□□□ 0.18
SKA3-201ENST00000298260 FCHSD2O94868 740 aa16.19■□□□□ 0.18
SKA3-201ENST00000298260 DNM1Q05193 864 aaKnown RBP16.19■□□□□ 0.18
SKA3-201ENST00000298260 DRC7Q8IY82 874 aa16.19■□□□□ 0.18
SKA3-201ENST00000298260 DDX54Q8TDD1 881 aaKnown RBP16.19■□□□□ 0.18
SKA3-201ENST00000298260 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.18■□□□□ 0.18
SKA3-201ENST00000298260 FUCA2Q9BTY2 467 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 ABCC3O15438 1527 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 EFCAB6Q5THR3 1501 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 TULP4Q9NRJ4 1543 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 TNNT1P13805 278 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 GNAI1P63096 354 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 FAM173BQ6P4H8 233 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 FEZ1Q99689 392 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 STAG3Q9UJ98 1225 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 EMILIN1Q9Y6C2 1016 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 VWDEQ8N2E2 1590 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 CKAP2LQ8IYA6 745 aa16.18■□□□□ 0.18
SKA3-201ENST00000298260 ESF1Q9H501 851 aaKnown RBP16.18■□□□□ 0.18
SKA3-201ENST00000298260 DDX41Q9UJV9 622 aaKnown RBP16.18■□□□□ 0.18
SKA3-201ENST00000298260 SYT1P21579 422 aa16.17■□□□□ 0.18
SKA3-201ENST00000298260 MYO3AQ8NEV4 1616 aa16.17■□□□□ 0.18
SKA3-201ENST00000298260 ARHGEF40Q8TER5 1519 aa16.17■□□□□ 0.18
SKA3-201ENST00000298260 RTL1A6NKG5 1358 aa16.16■□□□□ 0.18
SKA3-201ENST00000298260 UBE2HP62256 183 aa16.16■□□□□ 0.18
SKA3-201ENST00000298260 TERF2Q15554 542 aa16.16■□□□□ 0.18
SKA3-201ENST00000298260 KIF18AQ8NI77 898 aa16.16■□□□□ 0.18
SKA3-201ENST00000298260 RTF1Q92541 710 aaKnown RBP16.16■□□□□ 0.18
SKA3-201ENST00000298260 ZNF428Q96B54 188 aa16.16■□□□□ 0.18
SKA3-201ENST00000298260 INTS4Q96HW7 963 aaKnown RBP16.16■□□□□ 0.18
SKA3-201ENST00000298260 NSD2O96028 1365 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 LARGE1O95461 756 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 ZSCAN22P10073 491 aaPredicted RBP16.15■□□□□ 0.18
SKA3-201ENST00000298260 ARID5BQ14865 1188 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 CERS3Q8IU89 383 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 CFAP44Q96MT7 982 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 MIS18AQ9NYP9 233 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 USP27XA6NNY8 438 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 ZNF853P0CG23 659 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 CHMLP26374 656 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 KMT5BQ4FZB7 885 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 POLKQ9UBT6 870 aa16.15■□□□□ 0.18
SKA3-201ENST00000298260 STX6O43752 255 aa16.14■□□□□ 0.17
SKA3-201ENST00000298260 RPAP2Q8IXW5 612 aaPredicted RBP16.14■□□□□ 0.17
SKA3-201ENST00000298260 MCM2P49736 904 aa16.14■□□□□ 0.17
SKA3-201ENST00000298260 FERMT3Q86UX7 667 aa16.14■□□□□ 0.17
SKA3-201ENST00000298260 ZRANB1Q9UGI0 708 aa16.14■□□□□ 0.17
SKA3-201ENST00000298260 SYTL4Q96C24 671 aaPredicted RBP16.14■□□□□ 0.17
SKA3-201ENST00000298260 MCCP23508 829 aa16.13■□□□□ 0.17
SKA3-201ENST00000298260 TPD52L1Q16890 204 aaPredicted RBP16.13■□□□□ 0.17
SKA3-201ENST00000298260 CCDC112Q8NEF3 446 aa16.13■□□□□ 0.17
SKA3-201ENST00000298260 USP32Q8NFA0 1604 aa16.13■□□□□ 0.17
SKA3-201ENST00000298260 CABP1Q9NZU7 370 aa16.13■□□□□ 0.17
SKA3-201ENST00000298260 ZNF215Q9UL58 517 aaPredicted RBP16.13■□□□□ 0.17
SKA3-201ENST00000298260 KIF1BO60333 1816 aa16.13■□□□□ 0.17
SKA3-201ENST00000298260 ADGRB1O14514 1584 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 ZC3H13Q5T200 1668 aaKnown RBP16.12■□□□□ 0.17
SKA3-201ENST00000298260 VPS37CA5D8V6 355 aaPredicted RBP16.12■□□□□ 0.17
SKA3-201ENST00000298260 F13A1P00488 732 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 CAPN2P17655 700 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 RASEFQ8IZ41 740 aa16.12■□□□□ 0.17
SKA3-201ENST00000298260 IPO4Q8TEX9 1081 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms