RNA–Protein interactions for RNA: ENST00000274254.9

SKP2-201, Transcript of S-phase kinase associated protein 2, humanhuman

TSL 1 (best) BASIC

Gene SKP2, Length 1,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP2-201ENST00000274254 PRIM1P49642 420 aaKnown RBP22.47■■□□□ 1.19
SKP2-201ENST00000274254 CFAP44Q96MT7 982 aa22.47■■□□□ 1.19
SKP2-201ENST00000274254 SPINK5Q9NQ38 1064 aaPredicted RBP22.47■■□□□ 1.19
SKP2-201ENST00000274254 IFT57Q9NWB7 429 aa22.47■■□□□ 1.19
SKP2-201ENST00000274254 EP400Q96L91 3159 aa22.46■■□□□ 1.19
SKP2-201ENST00000274254 ACSBG1Q96GR2 724 aa22.46■■□□□ 1.19
SKP2-201ENST00000274254 CHL1O00533 1208 aa22.45■■□□□ 1.18
SKP2-201ENST00000274254 BABAM1Q9NWV8 329 aa22.45■■□□□ 1.18
SKP2-201ENST00000274254 TMOD3Q9NYL9 352 aa22.45■■□□□ 1.18
SKP2-201ENST00000274254 NHSQ6T4R5 1651 aa22.45■■□□□ 1.18
SKP2-201ENST00000274254 GNAI1P63096 354 aa22.44■■□□□ 1.18
SKP2-201ENST00000274254 PIGBQ92521 554 aa22.44■■□□□ 1.18
SKP2-201ENST00000274254 CDCA7LQ96GN5 454 aa22.44■■□□□ 1.18
SKP2-201ENST00000274254 KCNQ2O43526 872 aa22.43■■□□□ 1.18
SKP2-201ENST00000274254 SLFN5Q08AF3 891 aa22.43■■□□□ 1.18
SKP2-201ENST00000274254 E9PSI1 815 aa22.42■■□□□ 1.18
SKP2-201ENST00000274254 SYTL4Q96C24 671 aaPredicted RBP22.42■■□□□ 1.18
SKP2-201ENST00000274254 BTBD11A6QL63 1104 aa22.41■■□□□ 1.18
SKP2-201ENST00000274254 TRMT2AQ8IZ69 625 aaKnown RBP22.41■■□□□ 1.18
SKP2-201ENST00000274254 MIS18AQ9NYP9 233 aa22.41■■□□□ 1.18
SKP2-201ENST00000274254 LAS1LQ9Y4W2 734 aaKnown RBP22.41■■□□□ 1.18
SKP2-201ENST00000274254 KDM3BQ7LBC6 1761 aa22.41■■□□□ 1.18
SKP2-201ENST00000274254 MBIPQ9NS73 344 aa22.41■■□□□ 1.18
SKP2-201ENST00000274254 TSPYL4Q9UJ04 414 aa22.41■■□□□ 1.18
SKP2-201ENST00000274254 PAPPAQ13219 1627 aa22.4■■□□□ 1.18
SKP2-201ENST00000274254 PTF1AQ7RTS3 328 aa22.4■■□□□ 1.18
SKP2-201ENST00000274254 MYH16Q9H6N6 1097 aa22.4■■□□□ 1.18
SKP2-201ENST00000274254 BCL11BQ9C0K0 894 aaPredicted RBP22.39■■□□□ 1.17
SKP2-201ENST00000274254 FANCIQ9NVI1 1328 aa22.39■■□□□ 1.17
SKP2-201ENST00000274254 DUSP27Q5VZP5 1158 aa22.38■■□□□ 1.17
SKP2-201ENST00000274254 ZNF790Q6PG37 636 aa22.38■■□□□ 1.17
SKP2-201ENST00000274254 TSR2Q969E8 191 aaKnown RBP22.38■■□□□ 1.17
SKP2-201ENST00000274254 KCNQ3O43525 872 aa22.37■■□□□ 1.17
SKP2-201ENST00000274254 SLC39A6Q13433 755 aa22.37■■□□□ 1.17
SKP2-201ENST00000274254 ATG3Q9NT62 314 aa22.37■■□□□ 1.17
SKP2-201ENST00000274254 ASAP1Q9ULH1 1129 aa22.37■■□□□ 1.17
SKP2-201ENST00000274254 BTAF1O14981 1849 aa22.37■■□□□ 1.17
SKP2-201ENST00000274254 UBR2Q8IWV8 1755 aa22.36■■□□□ 1.17
SKP2-201ENST00000274254 TRIM37O94972 964 aa22.36■■□□□ 1.17
SKP2-201ENST00000274254 KCPQ6ZWJ8 1503 aa22.34■■□□□ 1.17
SKP2-201ENST00000274254 EIF4A1P60842 406 aaKnown RBP22.34■■□□□ 1.17
SKP2-201ENST00000274254 TTC5Q8N0Z6 440 aa22.33■■□□□ 1.17
SKP2-201ENST00000274254 HEG1Q9ULI3 1381 aa22.33■■□□□ 1.16
SKP2-201ENST00000274254 SMARCC1Q92922 1105 aaPredicted RBP22.31■■□□□ 1.16
SKP2-201ENST00000274254 ZNF496Q96IT1 587 aaPredicted RBP22.31■■□□□ 1.16
SKP2-201ENST00000274254 PALLDQ8WX93 1383 aa22.3■■□□□ 1.16
SKP2-201ENST00000274254 TNS1Q9HBL0 1735 aaKnown RBP22.3■■□□□ 1.16
SKP2-201ENST00000274254 KRT24Q2M2I5 525 aa22.3■■□□□ 1.16
SKP2-201ENST00000274254 FMNL2Q96PY5 1086 aa22.3■■□□□ 1.16
SKP2-201ENST00000274254 EXOSC9Q06265 439 aaKnown RBP22.29■■□□□ 1.16
SKP2-201ENST00000274254 C8orf58Q8NAV2 365 aa22.29■■□□□ 1.16
SKP2-201ENST00000274254 PTCD1O75127 700 aaKnown RBP22.28■■□□□ 1.16
SKP2-201ENST00000274254 TSPYL6Q8N831 410 aa22.27■■□□□ 1.16
SKP2-201ENST00000274254 LY75O60449 1722 aa22.27■■□□□ 1.15
SKP2-201ENST00000274254 GIGYF1O75420 1035 aaPredicted RBP22.26■■□□□ 1.15
SKP2-201ENST00000274254 VSIG10Q8N0Z9 540 aa22.26■■□□□ 1.15
SKP2-201ENST00000274254 SLC4A9Q96Q91 983 aa22.26■■□□□ 1.15
SKP2-201ENST00000274254 LOC102724428A0A0B4J2F2 783 aa22.26■■□□□ 1.15
SKP2-201ENST00000274254 SIK1P57059 783 aa22.26■■□□□ 1.15
SKP2-201ENST00000274254 ZNF831Q5JPB2 1677 aa22.26■■□□□ 1.15
SKP2-201ENST00000274254 SOS1Q07889 1333 aaPredicted RBP22.25■■□□□ 1.15
SKP2-201ENST00000274254 HOXB7P09629 217 aa22.25■■□□□ 1.15
SKP2-201ENST00000274254 SNRPA1P09661 255 aaKnown RBP22.25■■□□□ 1.15
SKP2-201ENST00000274254 RBM42Q9BTD8 480 aaKnown RBP22.25■■□□□ 1.15
SKP2-201ENST00000274254 PLSCR1O15162 318 aa22.24■■□□□ 1.15
SKP2-201ENST00000274254 APBA3O96018 575 aa22.24■■□□□ 1.15
SKP2-201ENST00000274254 TWISTNBQ3B726 338 aaPredicted RBP22.24■■□□□ 1.15
SKP2-201ENST00000274254 CICQ96RK0 1608 aaPredicted RBP22.24■■□□□ 1.15
SKP2-201ENST00000274254 ELL2O00472 640 aaPredicted RBP22.23■■□□□ 1.15
SKP2-201ENST00000274254 VAMP4O75379 141 aa22.23■■□□□ 1.15
SKP2-201ENST00000274254 CT47B1P0C2W7 299 aaPredicted RBP22.23■■□□□ 1.15
SKP2-201ENST00000274254 C5P01031 1676 aa22.23■■□□□ 1.15
SKP2-201ENST00000274254 PRAMEF22A3QJZ6 481 aa22.22■■□□□ 1.15
SKP2-201ENST00000274254 ILDR2Q71H61 639 aa22.22■■□□□ 1.15
SKP2-201ENST00000274254 RGPD3A6NKT7 1758 aaPredicted RBP22.21■■□□□ 1.15
SKP2-201ENST00000274254 RGPD4Q7Z3J3 1758 aa22.21■■□□□ 1.15
SKP2-201ENST00000274254 TJP1Q07157 1748 aa22.21■■□□□ 1.15
SKP2-201ENST00000274254 CCDC125Q86Z20 511 aa22.21■■□□□ 1.15
SKP2-201ENST00000274254 LAMB4A4D0S4 1761 aa22.2■■□□□ 1.14
SKP2-201ENST00000274254 ATP6V1AP38606 617 aa22.2■■□□□ 1.14
SKP2-201ENST00000274254 TEX13AQ9BXU3 409 aaPredicted RBP22.2■■□□□ 1.14
SKP2-201ENST00000274254 ITPK1Q13572 414 aa22.19■■□□□ 1.14
SKP2-201ENST00000274254 DNAJC10Q8IXB1 793 aa22.19■■□□□ 1.14
SKP2-201ENST00000274254 USP16Q9Y5T5 823 aa22.19■■□□□ 1.14
SKP2-201ENST00000274254 SLC27A3Q5K4L6 730 aa22.18■■□□□ 1.14
SKP2-201ENST00000274254 PROM2Q8N271 834 aa22.18■■□□□ 1.14
SKP2-201ENST00000274254 ZNF428Q96B54 188 aa22.18■■□□□ 1.14
SKP2-201ENST00000274254 CCNL1Q9UK58 526 aaPredicted RBP22.18■■□□□ 1.14
SKP2-201ENST00000274254 SF3B2Q13435 895 aaKnown RBP22.17■■□□□ 1.14
SKP2-201ENST00000274254 TXNRD1Q16881 649 aa22.16■■□□□ 1.14
SKP2-201ENST00000274254 HDGFL1Q5TGJ6 251 aa22.16■■□□□ 1.14
SKP2-201ENST00000274254 LRRC4BQ9NT99 713 aa22.16■■□□□ 1.14
SKP2-201ENST00000274254 COL5A3P25940 1745 aaPredicted RBP22.16■■□□□ 1.14
SKP2-201ENST00000274254 CYP19A1P11511 503 aaPredicted RBP22.16■■□□□ 1.14
SKP2-201ENST00000274254 EIF2S2P20042 333 aaKnown RBP22.16■■□□□ 1.14
SKP2-201ENST00000274254 KCNQ4P56696 695 aa22.16■■□□□ 1.14
SKP2-201ENST00000274254 CAMKK2Q96RR4 588 aa22.16■■□□□ 1.14
SKP2-201ENST00000274254 CHMP4AQ9BY43 222 aa22.16■■□□□ 1.14
SKP2-201ENST00000274254 TAF1LQ8IZX4 1826 aa22.15■■□□□ 1.14
SKP2-201ENST00000274254 STARD3NLO95772 234 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms