RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 ARHGEF25Q86VW2 580 aa13.94□□□□□ -0.18
MSH3-201ENST00000265081 MEIS3Q99687 375 aa13.94□□□□□ -0.18
MSH3-201ENST00000265081 DAXXQ9UER7 740 aaPredicted RBP13.94□□□□□ -0.18
MSH3-201ENST00000265081 CCDC30Q5VVM6 783 aa13.93□□□□□ -0.18
MSH3-201ENST00000265081 IL17RAQ96F46 866 aa13.93□□□□□ -0.18
MSH3-201ENST00000265081 UBR2Q8IWV8 1755 aa13.92□□□□□ -0.18
MSH3-201ENST00000265081 NBPF6Q5VWK0 638 aa13.92□□□□□ -0.18
MSH3-201ENST00000265081 NBPF4Q96M43 638 aa13.92□□□□□ -0.18
MSH3-201ENST00000265081 CDC45O75419 566 aa13.91□□□□□ -0.18
MSH3-201ENST00000265081 MFAP1P55081 439 aaKnown RBP13.91□□□□□ -0.18
MSH3-201ENST00000265081 MIS18AQ9NYP9 233 aa13.91□□□□□ -0.18
MSH3-201ENST00000265081 FRAT2O75474 233 aaPredicted RBP13.91□□□□□ -0.18
MSH3-201ENST00000265081 FLIIQ13045 1269 aa13.91□□□□□ -0.18
MSH3-201ENST00000265081 AK9Q5TCS8 1911 aa13.91□□□□□ -0.18
MSH3-201ENST00000265081 SHANK3Q9BYB0 1731 aa13.9□□□□□ -0.18
MSH3-201ENST00000265081 GSE1Q14687 1217 aa13.9□□□□□ -0.18
MSH3-201ENST00000265081 AKAP4Q5JQC9 854 aa13.9□□□□□ -0.18
MSH3-201ENST00000265081 EIF4A1P60842 406 aaKnown RBP13.9□□□□□ -0.19
MSH3-201ENST00000265081 AOX1Q06278 1338 aa13.88□□□□□ -0.19
MSH3-201ENST00000265081 STRCQ7RTU9 1775 aa13.88□□□□□ -0.19
MSH3-201ENST00000265081 SOX12O15370 315 aa13.88□□□□□ -0.19
MSH3-201ENST00000265081 AMOTQ4VCS5 1084 aa13.88□□□□□ -0.19
MSH3-201ENST00000265081 ATP8B2P98198 1209 aa13.87□□□□□ -0.19
MSH3-201ENST00000265081 TRHP20396 242 aaPredicted RBP13.87□□□□□ -0.19
MSH3-201ENST00000265081 POLA2Q14181 598 aa13.87□□□□□ -0.19
MSH3-201ENST00000265081 STAP2Q9UGK3 403 aa13.87□□□□□ -0.19
MSH3-201ENST00000265081 GCP02774 474 aa13.87□□□□□ -0.19
MSH3-201ENST00000265081 GNAI2P04899 355 aa13.87□□□□□ -0.19
MSH3-201ENST00000265081 NUTM2GQ5VZR2 741 aa13.87□□□□□ -0.19
MSH3-201ENST00000265081 GNAI3P08754 354 aa13.86□□□□□ -0.19
MSH3-201ENST00000265081 CIZ1Q9ULV3 898 aaPredicted RBP13.86□□□□□ -0.19
MSH3-201ENST00000265081 HMMRO75330 724 aa13.86□□□□□ -0.19
MSH3-201ENST00000265081 ESCO1Q5FWF5 840 aa13.86□□□□□ -0.19
MSH3-201ENST00000265081 CLEC17AQ6ZS10 378 aa13.86□□□□□ -0.19
MSH3-201ENST00000265081 STK31Q9BXU1 1019 aa13.86□□□□□ -0.19
MSH3-201ENST00000265081 NUP188Q5SRE5 1749 aa13.86□□□□□ -0.19
MSH3-201ENST00000265081 USP26Q9BXU7 913 aa13.85□□□□□ -0.19
MSH3-201ENST00000265081 PSME1Q06323 249 aa13.85□□□□□ -0.19
MSH3-201ENST00000265081 C16orf71Q8IYS4 520 aaPredicted RBP13.85□□□□□ -0.19
MSH3-201ENST00000265081 ORAI2Q96SN7 254 aa13.85□□□□□ -0.19
MSH3-201ENST00000265081 CHMP5Q9NZZ3 219 aa13.85□□□□□ -0.19
MSH3-201ENST00000265081 ADCY9O60503 1353 aa13.85□□□□□ -0.19
MSH3-201ENST00000265081 F6X3S4 739 aa13.85□□□□□ -0.19
MSH3-201ENST00000265081 USP44Q9H0E7 712 aa13.85□□□□□ -0.19
MSH3-201ENST00000265081 ARFGEF2Q9Y6D5 1785 aa13.85□□□□□ -0.19
MSH3-201ENST00000265081 OTUD7AQ8TE49 926 aaPredicted RBP13.85□□□□□ -0.19
MSH3-201ENST00000265081 SSH3Q8TE77 659 aa13.85□□□□□ -0.19
MSH3-201ENST00000265081 CHMP4AQ9BY43 222 aa13.85□□□□□ -0.19
MSH3-201ENST00000265081 KDM6AO15550 1401 aaPredicted RBP13.84□□□□□ -0.19
MSH3-201ENST00000265081 CPDO75976 1380 aa13.84□□□□□ -0.19
MSH3-201ENST00000265081 SDSP20132 328 aa13.84□□□□□ -0.19
MSH3-201ENST00000265081 C19orf44Q9H6X5 657 aa13.84□□□□□ -0.19
MSH3-201ENST00000265081 TNS3Q68CZ2 1445 aa13.84□□□□□ -0.19
MSH3-201ENST00000265081 USP42Q9H9J4 1324 aaKnown RBP13.83□□□□□ -0.19
MSH3-201ENST00000265081 RNMTO43148 476 aaKnown RBP13.83□□□□□ -0.2
MSH3-201ENST00000265081 USHBP1Q8N6Y0 703 aa13.83□□□□□ -0.2
MSH3-201ENST00000265081 LGR6Q9HBX8 967 aa13.83□□□□□ -0.2
MSH3-201ENST00000265081 EPB41L2O43491 1005 aaKnown RBP13.83□□□□□ -0.2
MSH3-201ENST00000265081 ERBB3P21860 1342 aa13.83□□□□□ -0.2
MSH3-201ENST00000265081 PDE1AP54750 535 aa13.83□□□□□ -0.2
MSH3-201ENST00000265081 HSCBQ8IWL3 235 aa13.83□□□□□ -0.2
MSH3-201ENST00000265081 UTYO14607 1347 aa13.83□□□□□ -0.2
MSH3-201ENST00000265081 NHSL1Q5SYE7 1610 aa13.82□□□□□ -0.2
MSH3-201ENST00000265081 CD2BP2O95400 341 aaKnown RBP13.82□□□□□ -0.2
MSH3-201ENST00000265081 MTX1Q13505 466 aa13.82□□□□□ -0.2
MSH3-201ENST00000265081 PLEKHO1Q53GL0 409 aaPredicted RBP13.82□□□□□ -0.2
MSH3-201ENST00000265081 BEND3Q5T5X7 828 aa13.82□□□□□ -0.2
MSH3-201ENST00000265081 BCL11AQ9H165 835 aa13.82□□□□□ -0.2
MSH3-201ENST00000265081 MEGF6O75095 1541 aa13.81□□□□□ -0.2
MSH3-201ENST00000265081 PNMA6EA0A0J9YXQ4 647 aa13.81□□□□□ -0.2
MSH3-201ENST00000265081 AXIN2Q9Y2T1 843 aa13.81□□□□□ -0.2
MSH3-201ENST00000265081 RAB3GAP1Q15042 981 aa13.81□□□□□ -0.2
MSH3-201ENST00000265081 IL27Q8NEV9 243 aa13.8□□□□□ -0.2
MSH3-201ENST00000265081 ANKRD24Q8TF21 1146 aa13.8□□□□□ -0.2
MSH3-201ENST00000265081 SLKQ9H2G2 1235 aaPredicted RBP13.8□□□□□ -0.2
MSH3-201ENST00000265081 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.8□□□□□ -0.21e-6■■■■□ 21.2
MSH3-201ENST00000265081 K7ELQ4 463 aaPredicted RBP13.8□□□□□ -0.2
MSH3-201ENST00000265081 MCM4P33991 863 aa13.8□□□□□ -0.2
MSH3-201ENST00000265081 RABEP1Q15276 862 aa13.8□□□□□ -0.2
MSH3-201ENST00000265081 HDGFL1Q5TGJ6 251 aa13.8□□□□□ -0.2
MSH3-201ENST00000265081 KRT28Q7Z3Y7 464 aa13.8□□□□□ -0.2
MSH3-201ENST00000265081 LRRC59Q96AG4 307 aaKnown RBP13.8□□□□□ -0.2
MSH3-201ENST00000265081 AFDNP55196 1824 aaKnown RBP13.8□□□□□ -0.2
MSH3-201ENST00000265081 TJP1Q07157 1748 aa13.8□□□□□ -0.2
MSH3-201ENST00000265081 SMARCA5O60264 1052 aaPredicted RBP13.8□□□□□ -0.2
MSH3-201ENST00000265081 FKBP5Q13451 457 aaPredicted RBP13.8□□□□□ -0.2
MSH3-201ENST00000265081 COL15A1P39059 1388 aa13.79□□□□□ -0.2
MSH3-201ENST00000265081 SRCIN1Q9C0H9 1055 aa13.79□□□□□ -0.2
MSH3-201ENST00000265081 PHAXQ9H814 394 aaKnown RBP13.79□□□□□ -0.2
MSH3-201ENST00000265081 RAB11FIP3O75154 756 aa13.79□□□□□ -0.2
MSH3-201ENST00000265081 LRRCC1Q9C099 1032 aa13.79□□□□□ -0.2
MSH3-201ENST00000265081 RBM33Q96EV2 1170 aaKnown RBP13.78□□□□□ -0.2
MSH3-201ENST00000265081 TMEM94Q12767 1356 aa13.78□□□□□ -0.2
MSH3-201ENST00000265081 GIGYF1O75420 1035 aaPredicted RBP13.78□□□□□ -0.2
MSH3-201ENST00000265081 LTV1Q96GA3 475 aaPredicted RBP13.78□□□□□ -0.2
MSH3-201ENST00000265081 CYP2E1P05181 493 aaPredicted RBP13.77□□□□□ -0.2
MSH3-201ENST00000265081 ZNF530Q6P9A1 599 aaPredicted RBP13.77□□□□□ -0.2
MSH3-201ENST00000265081 LRRFIP2Q9Y608 721 aaKnown RBP13.77□□□□□ -0.2
MSH3-201ENST00000265081 KCNQ3O43525 872 aa13.77□□□□□ -0.21
MSH3-201ENST00000265081 FSD2A1L4K1 749 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms