RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 RBM10P98175 930 aaKnown RBP20.23■□□□□ 0.83
ZNF541-201ENST00000263351 USHBP1Q8N6Y0 703 aa20.23■□□□□ 0.83
ZNF541-201ENST00000263351 EYA1Q99502 592 aa20.23■□□□□ 0.83
ZNF541-201ENST00000263351 PTPRCP08575 1304 aa20.23■□□□□ 0.83
ZNF541-201ENST00000263351 ZSCAN30Q86W11 494 aa20.22■□□□□ 0.83
ZNF541-201ENST00000263351 ESYT1Q9BSJ8 1104 aa20.22■□□□□ 0.83
ZNF541-201ENST00000263351 KIF24Q5T7B8 1368 aa20.22■□□□□ 0.83
ZNF541-201ENST00000263351 GADD45BO75293 160 aaPredicted RBP20.22■□□□□ 0.83
ZNF541-201ENST00000263351 LTKP29376 864 aa20.22■□□□□ 0.83
ZNF541-201ENST00000263351 RTF1Q92541 710 aaKnown RBP20.21■□□□□ 0.83
ZNF541-201ENST00000263351 ARID3AQ99856 593 aa20.21■□□□□ 0.83
ZNF541-201ENST00000263351 MX1P20591 662 aa20.2■□□□□ 0.82
ZNF541-201ENST00000263351 FLIIQ13045 1269 aa20.2■□□□□ 0.82
ZNF541-201ENST00000263351 PHAXQ9H814 394 aaKnown RBP20.2■□□□□ 0.82
ZNF541-201ENST00000263351 CEP170BQ9Y4F5 1589 aaPredicted RBP20.2■□□□□ 0.82
ZNF541-201ENST00000263351 ITSN1Q15811 1721 aa20.2■□□□□ 0.82
ZNF541-201ENST00000263351 OVOS2A0A0J9YW53 1432 aa20.2■□□□□ 0.82
ZNF541-201ENST00000263351 OVOS2Q6IE36 1432 aa20.2■□□□□ 0.82
ZNF541-201ENST00000263351 KIAA0232Q92628 1395 aa20.2■□□□□ 0.82
ZNF541-201ENST00000263351 GNAI2P04899 355 aa20.2■□□□□ 0.82
ZNF541-201ENST00000263351 CEBPAP49715 358 aaPredicted RBP20.2■□□□□ 0.82
ZNF541-201ENST00000263351 SALL3Q9BXA9 1300 aa20.19■□□□□ 0.82
ZNF541-201ENST00000263351 AKAP12Q02952 1782 aa20.19■□□□□ 0.82
ZNF541-201ENST00000263351 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.19■□□□□ 0.82
ZNF541-201ENST00000263351 ANXA1P04083 346 aa20.19■□□□□ 0.82
ZNF541-201ENST00000263351 CPA1P15085 419 aa20.19■□□□□ 0.82
ZNF541-201ENST00000263351 CHMLP26374 656 aa20.19■□□□□ 0.82
ZNF541-201ENST00000263351 SPATA31D1Q6ZQQ2 1576 aa20.19■□□□□ 0.82
ZNF541-201ENST00000263351 LRRCC1Q9C099 1032 aa20.18■□□□□ 0.82
ZNF541-201ENST00000263351 R3HCC1Q9Y3T6 440 aaKnown RBP20.18■□□□□ 0.82
ZNF541-201ENST00000263351 NRKQ7Z2Y5 1582 aa20.18■□□□□ 0.82
ZNF541-201ENST00000263351 HMMRO75330 724 aa20.18■□□□□ 0.82
ZNF541-201ENST00000263351 PTMSP20962 102 aa20.18■□□□□ 0.82
ZNF541-201ENST00000263351 MSNP26038 577 aaKnown RBP20.18■□□□□ 0.82
ZNF541-201ENST00000263351 ANP32BQ92688 251 aaKnown RBP20.18■□□□□ 0.82
ZNF541-201ENST00000263351 VSIG10Q8N0Z9 540 aa20.17■□□□□ 0.82
ZNF541-201ENST00000263351 DDX54Q8TDD1 881 aaKnown RBP20.17■□□□□ 0.82
ZNF541-201ENST00000263351 AMPHP49418 695 aa20.17■□□□□ 0.82
ZNF541-201ENST00000263351 REREQ9P2R6 1566 aa20.17■□□□□ 0.82
ZNF541-201ENST00000263351 CWC22Q9HCG8 908 aaKnown RBP20.16■□□□□ 0.82
ZNF541-201ENST00000263351 USP6P35125 1406 aa20.16■□□□□ 0.82
ZNF541-201ENST00000263351 JARID2Q92833 1246 aaPredicted RBP20.16■□□□□ 0.82
ZNF541-201ENST00000263351 IBTKQ9P2D0 1353 aaPredicted RBP20.16■□□□□ 0.82
ZNF541-201ENST00000263351 OSBPL3Q9H4L5 887 aa20.15■□□□□ 0.82
ZNF541-201ENST00000263351 ESF1Q9H501 851 aaKnown RBP20.15■□□□□ 0.82
ZNF541-201ENST00000263351 CCT4P50991 539 aaKnown RBP20.15■□□□□ 0.82
ZNF541-201ENST00000263351 STK31Q9BXU1 1019 aa20.15■□□□□ 0.82
ZNF541-201ENST00000263351 TCHHQ07283 1943 aa20.15■□□□□ 0.82
ZNF541-201ENST00000263351 IL17REQ8NFR9 667 aa20.14■□□□□ 0.82
ZNF541-201ENST00000263351 RBM33Q96EV2 1170 aaKnown RBP20.14■□□□□ 0.82
ZNF541-201ENST00000263351 BRD1O95696 1058 aa20.14■□□□□ 0.81
ZNF541-201ENST00000263351 EIF2S2P20042 333 aaKnown RBP20.14■□□□□ 0.81
ZNF541-201ENST00000263351 USP44Q9H0E7 712 aa20.14■□□□□ 0.81
ZNF541-201ENST00000263351 LRSAM1Q6UWE0 723 aa20.13■□□□□ 0.81
ZNF541-201ENST00000263351 ZNF830Q96NB3 372 aaPredicted RBP20.13■□□□□ 0.81
ZNF541-201ENST00000263351 NGDNQ8NEJ9 315 aaKnown RBP20.12■□□□□ 0.81
ZNF541-201ENST00000263351 PDLIM2Q96JY6 352 aa20.12■□□□□ 0.81
ZNF541-201ENST00000263351 ATP8B2P98198 1209 aa20.12■□□□□ 0.81
ZNF541-201ENST00000263351 COL9A3Q14050 684 aaPredicted RBP20.12■□□□□ 0.81
ZNF541-201ENST00000263351 ADAMTS13Q76LX8 1427 aa20.11■□□□□ 0.81
ZNF541-201ENST00000263351 OFD1O75665 1012 aa20.11■□□□□ 0.81
ZNF541-201ENST00000263351 RGPD1P0DJD0 1748 aa20.11■□□□□ 0.81
ZNF541-201ENST00000263351 PTPRUQ92729 1446 aa20.11■□□□□ 0.81
ZNF541-201ENST00000263351 SPG7Q9UQ90 795 aa20.11■□□□□ 0.81
ZNF541-201ENST00000263351 KCNQ3O43525 872 aa20.1■□□□□ 0.81
ZNF541-201ENST00000263351 NBPF7P0C2Y1 421 aaPredicted RBP20.1■□□□□ 0.81
ZNF541-201ENST00000263351 RASEFQ8IZ41 740 aa20.1■□□□□ 0.81
ZNF541-201ENST00000263351 SURF6O75683 361 aaKnown RBP20.1■□□□□ 0.81
ZNF541-201ENST00000263351 SETD1BQ9UPS6 1966 aaKnown RBP20.09■□□□□ 0.81
ZNF541-201ENST00000263351 PLEKHG3A1L390 1219 aa20.09■□□□□ 0.81
ZNF541-201ENST00000263351 NLRP6P59044 892 aa20.09■□□□□ 0.81
ZNF541-201ENST00000263351 PPP1R42Q7Z4L9 355 aa20.09■□□□□ 0.81
ZNF541-201ENST00000263351 C17orf53Q8N3J3 647 aaPredicted RBP20.09■□□□□ 0.81
ZNF541-201ENST00000263351 C14orf37Q86TY3 774 aa20.09■□□□□ 0.81
ZNF541-201ENST00000263351 USP48Q86UV5 1035 aa20.09■□□□□ 0.81
ZNF541-201ENST00000263351 SOS1Q07889 1333 aaPredicted RBP20.09■□□□□ 0.81
ZNF541-201ENST00000263351 LARGE1O95461 756 aa20.08■□□□□ 0.81
ZNF541-201ENST00000263351 CUL4AQ13619 759 aa20.08■□□□□ 0.81
ZNF541-201ENST00000263351 NOL7Q9UMY1 257 aaKnown RBP20.08■□□□□ 0.81
ZNF541-201ENST00000263351 CNPY2Q9Y2B0 182 aa20.08■□□□□ 0.81
ZNF541-201ENST00000263351 TECPR2O15040 1411 aa20.08■□□□□ 0.81
ZNF541-201ENST00000263351 HAP1P54257 671 aaPredicted RBP20.08■□□□□ 0.8
ZNF541-201ENST00000263351 TMEM2Q9UHN6 1383 aa20.08■□□□□ 0.8
ZNF541-201ENST00000263351 RGPD8O14715 1765 aaPredicted RBP20.08■□□□□ 0.8
ZNF541-201ENST00000263351 RRP9O43818 475 aaKnown RBP20.07■□□□□ 0.8
ZNF541-201ENST00000263351 FAM13BQ9NYF5 915 aa20.07■□□□□ 0.8
ZNF541-201ENST00000263351 UBTFL1P0CB47 393 aaPredicted RBP20.07■□□□□ 0.8
ZNF541-201ENST00000263351 AMOTL2Q9Y2J4 779 aa20.07■□□□□ 0.8
ZNF541-201ENST00000263351 USP31Q70CQ4 1352 aa20.06■□□□□ 0.8
ZNF541-201ENST00000263351 IGSF1Q8N6C5 1336 aa20.06■□□□□ 0.8
ZNF541-201ENST00000263351 TUBGCP6Q96RT7 1819 aa20.06■□□□□ 0.8
ZNF541-201ENST00000263351 CCDC30Q5VVM6 783 aa20.06■□□□□ 0.8
ZNF541-201ENST00000263351 CWC27Q6UX04 472 aaKnown RBP20.06■□□□□ 0.8
ZNF541-201ENST00000263351 SRCIN1Q9C0H9 1055 aa20.06■□□□□ 0.8
ZNF541-201ENST00000263351 ARHGEF10O15013 1369 aa20.06■□□□□ 0.8
ZNF541-201ENST00000263351 GNAT3A8MTJ3 354 aa20.06■□□□□ 0.8
ZNF541-201ENST00000263351 HDGFL1Q5TGJ6 251 aa20.06■□□□□ 0.8
ZNF541-201ENST00000263351 TSC1Q92574 1164 aa20.06■□□□□ 0.8
ZNF541-201ENST00000263351 FLT4P35916 1363 aa20.06■□□□□ 0.8
ZNF541-201ENST00000263351 TNRQ92752 1358 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms