RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PNMA6EA0A0J9YXQ4 647 aa15.4■□□□□ 0.06
LIG1-201ENST00000263274 CCT4P50991 539 aaKnown RBP15.4■□□□□ 0.06
LIG1-201ENST00000263274 USHBP1Q8N6Y0 703 aa15.4■□□□□ 0.06
LIG1-201ENST00000263274 MAP3K19Q56UN5 1328 aa15.4■□□□□ 0.06
LIG1-201ENST00000263274 SURF6O75683 361 aaKnown RBP15.39■□□□□ 0.05
LIG1-201ENST00000263274 MX1P20591 662 aa15.39■□□□□ 0.05
LIG1-201ENST00000263274 FLIIQ13045 1269 aa15.39■□□□□ 0.05
LIG1-201ENST00000263274 R3HCC1Q9Y3T6 440 aaKnown RBP15.39■□□□□ 0.05
LIG1-201ENST00000263274 PALD1Q9ULE6 856 aa15.39■□□□□ 0.05
LIG1-201ENST00000263274 CFAP74Q9C0B2 1584 aa15.39■□□□□ 0.05
LIG1-201ENST00000263274 ZSCAN30Q86W11 494 aa15.38■□□□□ 0.05
LIG1-201ENST00000263274 NSFL1CQ9UNZ2 370 aaKnown RBP15.38■□□□□ 0.05
LIG1-201ENST00000263274 ATP7BP35670 1465 aa15.38■□□□□ 0.05
LIG1-201ENST00000263274 UBTFL1P0CB47 393 aaPredicted RBP15.38■□□□□ 0.05
LIG1-201ENST00000263274 XPCQ01831 940 aaPredicted RBP15.38■□□□□ 0.05
LIG1-201ENST00000263274 CPS1P31327 1500 aa15.38■□□□□ 0.05
LIG1-201ENST00000263274 CCDC30Q5VVM6 783 aa15.37■□□□□ 0.05
LIG1-201ENST00000263274 GPT2Q8TD30 523 aa15.37■□□□□ 0.05
LIG1-201ENST00000263274 EYA1Q99502 592 aa15.37■□□□□ 0.05
LIG1-201ENST00000263274 GNAI3P08754 354 aa15.37■□□□□ 0.05
LIG1-201ENST00000263274 ANXA1P04083 346 aa15.36■□□□□ 0.05
LIG1-201ENST00000263274 DNTTIP2Q5QJE6 756 aaKnown RBP15.36■□□□□ 0.05
LIG1-201ENST00000263274 DDX54Q8TDD1 881 aaKnown RBP15.36■□□□□ 0.05
LIG1-201ENST00000263274 ESYT1Q9BSJ8 1104 aa15.36■□□□□ 0.05
LIG1-201ENST00000263274 TMEM131LA2VDJ0 1609 aa15.36■□□□□ 0.05
LIG1-201ENST00000263274 TMEM63CQ9P1W3 806 aa15.36■□□□□ 0.05
LIG1-201ENST00000263274 ZDHHC9Q9Y397 364 aa15.36■□□□□ 0.05
LIG1-201ENST00000263274 AATKQ6ZMQ8 1374 aa15.35■□□□□ 0.05
LIG1-201ENST00000263274 LMOD2Q6P5Q4 547 aa15.35■□□□□ 0.05
LIG1-201ENST00000263274 UNC5CLQ8IV45 518 aa15.35■□□□□ 0.05
LIG1-201ENST00000263274 HDGFL1Q5TGJ6 251 aa15.35■□□□□ 0.05
LIG1-201ENST00000263274 RBM33Q96EV2 1170 aaKnown RBP15.35■□□□□ 0.05
LIG1-201ENST00000263274 CDK12Q9NYV4 1490 aaPredicted RBP15.35■□□□□ 0.05
LIG1-201ENST00000263274 CPSF1Q10570 1443 aaKnown RBP15.35■□□□□ 0.05
LIG1-201ENST00000263274 A2ML1A8K2U0 1454 aa15.34■□□□□ 0.05
LIG1-201ENST00000263274 PHAXQ9H814 394 aaKnown RBP15.34■□□□□ 0.05
LIG1-201ENST00000263274 ATP10DQ9P241 1426 aa15.34■□□□□ 0.05
LIG1-201ENST00000263274 FAM13BQ9NYF5 915 aa15.34■□□□□ 0.05
LIG1-201ENST00000263274 CHMLP26374 656 aa15.33■□□□□ 0.04
LIG1-201ENST00000263274 PREX1Q8TCU6 1659 aa15.32■□□□□ 0.04
LIG1-201ENST00000263274 GNAT3A8MTJ3 354 aa15.32■□□□□ 0.04
LIG1-201ENST00000263274 SRGAP3O43295 1099 aa15.32■□□□□ 0.04
LIG1-201ENST00000263274 KCNJ4P48050 445 aa15.32■□□□□ 0.04
LIG1-201ENST00000263274 CWC27Q6UX04 472 aaKnown RBP15.32■□□□□ 0.04
LIG1-201ENST00000263274 ABTB2Q8N961 1025 aa15.32■□□□□ 0.04
LIG1-201ENST00000263274 AMOTL2Q9Y2J4 779 aa15.32■□□□□ 0.04
LIG1-201ENST00000263274 CHMP3Q9Y3E7 222 aa15.32■□□□□ 0.04
LIG1-201ENST00000263274 ROBO2Q9HCK4 1378 aa15.32■□□□□ 0.04
LIG1-201ENST00000263274 EID1Q9Y6B2 187 aa15.32■□□□□ 0.04
LIG1-201ENST00000263274 LTKP29376 864 aa15.31■□□□□ 0.04
LIG1-201ENST00000263274 ZNF445P59923 1031 aa15.31■□□□□ 0.04
LIG1-201ENST00000263274 ATP8B2P98198 1209 aa15.31■□□□□ 0.04
LIG1-201ENST00000263274 SPG7Q9UQ90 795 aa15.31■□□□□ 0.04
LIG1-201ENST00000263274 CPA1P15085 419 aa15.31■□□□□ 0.04
LIG1-201ENST00000263274 PPP1R42Q7Z4L9 355 aa15.31■□□□□ 0.04
LIG1-201ENST00000263274 KIF20BQ96Q89 1820 aa15.31■□□□□ 0.04
LIG1-201ENST00000263274 PPP1R9BQ96SB3 815 aa15.3■□□□□ 0.04
LIG1-201ENST00000263274 KIF24Q5T7B8 1368 aa15.3■□□□□ 0.04
LIG1-201ENST00000263274 HSPA2P54652 639 aa15.3■□□□□ 0.04
LIG1-201ENST00000263274 GADD45BO75293 160 aaPredicted RBP15.3■□□□□ 0.04
LIG1-201ENST00000263274 CYP2E1P05181 493 aaPredicted RBP15.3■□□□□ 0.04
LIG1-201ENST00000263274 KIAA0232Q92628 1395 aa15.29■□□□□ 0.04
LIG1-201ENST00000263274 FIBPO43427 364 aa15.29■□□□□ 0.04
LIG1-201ENST00000263274 LRSAM1Q6UWE0 723 aa15.29■□□□□ 0.04
LIG1-201ENST00000263274 MBD3O95983 291 aa15.29■□□□□ 0.04
LIG1-201ENST00000263274 SYAP1Q96A49 352 aaPredicted RBP15.29■□□□□ 0.04
LIG1-201ENST00000263274 MCM2P49736 904 aa15.28■□□□□ 0.04
LIG1-201ENST00000263274 TAF7Q15545 349 aaPredicted RBP15.28■□□□□ 0.04
LIG1-201ENST00000263274 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.28■□□□□ 0.04
LIG1-201ENST00000263274 SRCIN1Q9C0H9 1055 aa15.28■□□□□ 0.04
LIG1-201ENST00000263274 TSPY26PQ9H489 355 aa15.28■□□□□ 0.04
LIG1-201ENST00000263274 CLEC17AQ6ZS10 378 aa15.27■□□□□ 0.04
LIG1-201ENST00000263274 IL17REQ8NFR9 667 aa15.27■□□□□ 0.04
LIG1-201ENST00000263274 ZNF830Q96NB3 372 aaPredicted RBP15.27■□□□□ 0.04
LIG1-201ENST00000263274 USP44Q9H0E7 712 aa15.27■□□□□ 0.04
LIG1-201ENST00000263274 IL25Q9H293 177 aa15.27■□□□□ 0.04
LIG1-201ENST00000263274 RGS12O14924 1447 aa15.27■□□□□ 0.04
LIG1-201ENST00000263274 PAXIP1Q6ZW49 1069 aaPredicted RBP15.27■□□□□ 0.04
LIG1-201ENST00000263274 USP48Q86UV5 1035 aa15.27■□□□□ 0.04
LIG1-201ENST00000263274 DIAPH3Q9NSV4 1193 aa15.27■□□□□ 0.04
LIG1-201ENST00000263274 RICTORQ6R327 1708 aa15.27■□□□□ 0.03
LIG1-201ENST00000263274 ANKRD26Q9UPS8 1709 aa15.27■□□□□ 0.03
LIG1-201ENST00000263274 VPS37CA5D8V6 355 aaPredicted RBP15.26■□□□□ 0.03
LIG1-201ENST00000263274 PI4KAP2A4QPH2 592 aa15.26■□□□□ 0.03
LIG1-201ENST00000263274 TEFQ10587 303 aa15.26■□□□□ 0.03
LIG1-201ENST00000263274 PI4KAP1Q8N8J0 262 aa15.26■□□□□ 0.03
LIG1-201ENST00000263274 C9orf78Q9NZ63 289 aaPredicted RBP15.26■□□□□ 0.03
LIG1-201ENST00000263274 PPP6R1Q9UPN7 881 aa15.26■□□□□ 0.03
LIG1-201ENST00000263274 SMC3Q9UQE7 1217 aa15.26■□□□□ 0.03
LIG1-201ENST00000263274 NBPF7P0C2Y1 421 aaPredicted RBP15.25■□□□□ 0.03
LIG1-201ENST00000263274 AIMP1Q12904 312 aaKnown RBP15.25■□□□□ 0.03
LIG1-201ENST00000263274 RHPN1Q8TCX5 695 aa15.25■□□□□ 0.03
LIG1-201ENST00000263274 PLEKHG3A1L390 1219 aa15.25■□□□□ 0.03
LIG1-201ENST00000263274 BRD1O95696 1058 aa15.25■□□□□ 0.03
LIG1-201ENST00000263274 TPM2P07951 284 aa15.25■□□□□ 0.03
LIG1-201ENST00000263274 OSBPL3Q9H4L5 887 aa15.25■□□□□ 0.03
LIG1-201ENST00000263274 CNPY2Q9Y2B0 182 aa15.25■□□□□ 0.03
LIG1-201ENST00000263274 PDCL3Q9H2J4 239 aa15.25■□□□□ 0.03
LIG1-201ENST00000263274 TNRQ92752 1358 aa15.25■□□□□ 0.03
LIG1-201ENST00000263274 DLG5Q8TDM6 1919 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms