RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CLCN1P35523 988 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 ESCO1Q5FWF5 840 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 NOL8Q76FK4 1167 aaKnown RBP12.39□□□□□ -0.43
LIG3-201ENST00000262327 SLC4A2P04920 1241 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 CEP85Q6P2H3 762 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 CADPS2Q86UW7 1296 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 MSH6P52701 1360 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 LMOD3Q0VAK6 560 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 G2E3Q7L622 706 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 USP26Q9BXU7 913 aa12.39□□□□□ -0.43
LIG3-201ENST00000262327 USP54Q70EL1 1684 aa12.38□□□□□ -0.43
LIG3-201ENST00000262327 MST1RQ04912 1400 aa12.38□□□□□ -0.43
LIG3-201ENST00000262327 CAVIN1Q6NZI2 390 aaKnown RBP12.38□□□□□ -0.43
LIG3-201ENST00000262327 ANKRD44Q8N8A2 993 aa12.38□□□□□ -0.43
LIG3-201ENST00000262327 CDK12Q9NYV4 1490 aaPredicted RBP12.37□□□□□ -0.43
LIG3-201ENST00000262327 GOLGA6L22H0YM25 854 aa12.37□□□□□ -0.43
LIG3-201ENST00000262327 FOXD4L6Q3SYB3 417 aaPredicted RBP12.36□□□□□ -0.43
LIG3-201ENST00000262327 FOXD4L3Q6VB84 417 aaPredicted RBP12.36□□□□□ -0.43
LIG3-201ENST00000262327 RBM27Q9P2N5 1060 aaKnown RBP12.36□□□□□ -0.43
LIG3-201ENST00000262327 EXOC6BQ9Y2D4 811 aa12.36□□□□□ -0.43
LIG3-201ENST00000262327 ZNF335Q9H4Z2 1342 aaPredicted RBP12.36□□□□□ -0.43
LIG3-201ENST00000262327 PSME1Q06323 249 aa12.36□□□□□ -0.43
LIG3-201ENST00000262327 TPRNQ4KMQ1 711 aa12.36□□□□□ -0.43
LIG3-201ENST00000262327 INTS3Q68E01 1043 aaKnown RBP12.36□□□□□ -0.43
LIG3-201ENST00000262327 PIK3C2AO00443 1686 aa12.36□□□□□ -0.43
LIG3-201ENST00000262327 RABEP1Q15276 862 aa12.36□□□□□ -0.43
LIG3-201ENST00000262327 SKOR2Q2VWA4 1001 aaPredicted RBP12.36□□□□□ -0.43
LIG3-201ENST00000262327 XIRP1Q702N8 1843 aaKnown RBP12.35□□□□□ -0.43
LIG3-201ENST00000262327 NASPP49321 788 aaPredicted RBP12.35□□□□□ -0.43
LIG3-201ENST00000262327 ORAI2Q96SN7 254 aa12.35□□□□□ -0.43
LIG3-201ENST00000262327 PRPF40AO75400 957 aaKnown RBP12.35□□□□□ -0.43
LIG3-201ENST00000262327 CHL1O00533 1208 aa12.34□□□□□ -0.43
LIG3-201ENST00000262327 RTL1A6NKG5 1358 aa12.34□□□□□ -0.43
LIG3-201ENST00000262327 ATP10DQ9P241 1426 aa12.34□□□□□ -0.43
LIG3-201ENST00000262327 NLRP6P59044 892 aa12.33□□□□□ -0.44
LIG3-201ENST00000262327 DLG5Q8TDM6 1919 aa12.33□□□□□ -0.44
LIG3-201ENST00000262327 RPAP2Q8IXW5 612 aaPredicted RBP12.33□□□□□ -0.44
LIG3-201ENST00000262327 ABTB2Q8N961 1025 aa12.33□□□□□ -0.44
LIG3-201ENST00000262327 TSPYL4Q9UJ04 414 aa12.33□□□□□ -0.44
LIG3-201ENST00000262327 RGS12O14924 1447 aa12.32□□□□□ -0.44
LIG3-201ENST00000262327 KLHL40Q2TBA0 621 aa12.32□□□□□ -0.44
LIG3-201ENST00000262327 BCL11BQ9C0K0 894 aaPredicted RBP12.32□□□□□ -0.44
LIG3-201ENST00000262327 KIF24Q5T7B8 1368 aa12.32□□□□□ -0.44
LIG3-201ENST00000262327 NUTM2GQ5VZR2 741 aa12.32□□□□□ -0.44
LIG3-201ENST00000262327 LMBRD1Q9NUN5 540 aa12.32□□□□□ -0.44
LIG3-201ENST00000262327 NSFL1CQ9UNZ2 370 aaKnown RBP12.32□□□□□ -0.44
LIG3-201ENST00000262327 NEK4P51957 841 aa12.31□□□□□ -0.44
LIG3-201ENST00000262327 MTHFSDQ2M296 383 aaKnown RBP12.31□□□□□ -0.44
LIG3-201ENST00000262327 CASC1Q6TDU7 716 aa12.31□□□□□ -0.44
LIG3-201ENST00000262327 KRT28Q7Z3Y7 464 aa12.31□□□□□ -0.44
LIG3-201ENST00000262327 RILPL2Q969X0 211 aa12.31□□□□□ -0.44
LIG3-201ENST00000262327 ZDHHC9Q9Y397 364 aa12.31□□□□□ -0.44
LIG3-201ENST00000262327 TRPM3Q9HCF6 1732 aaPredicted RBP12.31□□□□□ -0.44
LIG3-201ENST00000262327 MARF1Q9Y4F3 1742 aaKnown RBP12.31□□□□□ -0.44
LIG3-201ENST00000262327 ZSCAN23Q3MJ62 389 aa12.31□□□□□ -0.44
LIG3-201ENST00000262327 TRIM6-TRIM34B2RNG4 842 aa12.31□□□□□ -0.44
LIG3-201ENST00000262327 ST18O60284 1047 aa12.31□□□□□ -0.44
LIG3-201ENST00000262327 DTNBO60941 627 aa12.31□□□□□ -0.44
LIG3-201ENST00000262327 PDIA4P13667 645 aaKnown RBP12.31□□□□□ -0.44
LIG3-201ENST00000262327 PDE1AP54750 535 aa12.3□□□□□ -0.44
LIG3-201ENST00000262327 MAP3K19Q56UN5 1328 aa12.3□□□□□ -0.44
LIG3-201ENST00000262327 SBNO1A3KN83 1393 aa12.3□□□□□ -0.44
LIG3-201ENST00000262327 PRIM1P49642 420 aaKnown RBP12.3□□□□□ -0.44
LIG3-201ENST00000262327 GPT2Q8TD30 523 aa12.3□□□□□ -0.44
LIG3-201ENST00000262327 RTF1Q92541 710 aaKnown RBP12.3□□□□□ -0.44
LIG3-201ENST00000262327 RBSNQ9H1K0 784 aa12.3□□□□□ -0.44
LIG3-201ENST00000262327 PALD1Q9ULE6 856 aa12.3□□□□□ -0.44
LIG3-201ENST00000262327 NPHP3Q7Z494 1330 aa12.3□□□□□ -0.44
LIG3-201ENST00000262327 ZBTB7CA1YPR0 619 aa12.29□□□□□ -0.44
LIG3-201ENST00000262327 ERC2O15083 957 aa12.29□□□□□ -0.44
LIG3-201ENST00000262327 MAP4K4O95819 1239 aaPredicted RBP12.29□□□□□ -0.44
LIG3-201ENST00000262327 NUCB2P80303 420 aa12.29□□□□□ -0.44
LIG3-201ENST00000262327 ISY1Q9ULR0 285 aaKnown RBP12.29□□□□□ -0.44
LIG3-201ENST00000262327 PNMA6EA0A0J9YXQ4 647 aa12.29□□□□□ -0.44
LIG3-201ENST00000262327 KCNH5Q8NCM2 988 aa12.29□□□□□ -0.44
LIG3-201ENST00000262327 ANP32BQ92688 251 aaKnown RBP12.29□□□□□ -0.44
LIG3-201ENST00000262327 LTV1Q96GA3 475 aaPredicted RBP12.29□□□□□ -0.44
LIG3-201ENST00000262327 FKBP5Q13451 457 aaPredicted RBP12.29□□□□□ -0.44
LIG3-201ENST00000262327 RNF214Q8ND24 703 aa12.29□□□□□ -0.44
LIG3-201ENST00000262327 UPF3BQ9BZI7 483 aaKnown RBP12.29□□□□□ -0.44
LIG3-201ENST00000262327 FLT4P35916 1363 aa12.28□□□□□ -0.44
LIG3-201ENST00000262327 REC8O95072 547 aa12.28□□□□□ -0.44
LIG3-201ENST00000262327 CYP2E1P05181 493 aaPredicted RBP12.28□□□□□ -0.44
LIG3-201ENST00000262327 IL1RAPL2Q9NP60 686 aa12.28□□□□□ -0.44
LIG3-201ENST00000262327 ANO2Q9NQ90 1003 aa12.28□□□□□ -0.44
LIG3-201ENST00000262327 PRDM4Q9UKN5 801 aa12.28□□□□□ -0.44
LIG3-201ENST00000262327 LARP6Q9BRS8 491 aaKnown RBP12.28□□□□□ -0.44
LIG3-201ENST00000262327 GDPD2Q9HCC8 539 aa12.28□□□□□ -0.44
LIG3-201ENST00000262327 SLIT3O75094 1523 aa12.28□□□□□ -0.44
LIG3-201ENST00000262327 PEAK1Q9H792 1746 aa12.27□□□□□ -0.44
LIG3-201ENST00000262327 SYCE3A1L190 88 aa12.27□□□□□ -0.44
LIG3-201ENST00000262327 PTMSP20962 102 aa12.27□□□□□ -0.44
LIG3-201ENST00000262327 CCDC173Q0VFZ6 552 aa12.27□□□□□ -0.44
LIG3-201ENST00000262327 UNC5CLQ8IV45 518 aa12.27□□□□□ -0.44
LIG3-201ENST00000262327 SLAIN2Q9P270 581 aa12.27□□□□□ -0.44
LIG3-201ENST00000262327 HMMRO75330 724 aa12.27□□□□□ -0.45
LIG3-201ENST00000262327 MPNDQ8N594 471 aa12.27□□□□□ -0.45
LIG3-201ENST00000262327 TMX3Q96JJ7 454 aa12.27□□□□□ -0.45
LIG3-201ENST00000262327 PTPRCP08575 1304 aa12.27□□□□□ -0.45
LIG3-201ENST00000262327 ALS2Q96Q42 1657 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms