RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 DDB1Q16531 1140 aa16.49■□□□□ 0.23
LDLR-201ENST00000252444 TMEM94Q12767 1356 aa16.49■□□□□ 0.23
LDLR-201ENST00000252444 METP08581 1390 aa16.49■□□□□ 0.23
LDLR-201ENST00000252444 SLF2Q8IX21 1173 aa16.49■□□□□ 0.23
LDLR-201ENST00000252444 NEUROD6Q96NK8 337 aa16.49■□□□□ 0.23
LDLR-201ENST00000252444 FSD1Q9BTV5 496 aa16.49■□□□□ 0.23
LDLR-201ENST00000252444 ANO2Q9NQ90 1003 aa16.49■□□□□ 0.23
LDLR-201ENST00000252444 TOMM22Q9NS69 142 aa16.49■□□□□ 0.23
LDLR-201ENST00000252444 CDK12Q9NYV4 1490 aaPredicted RBP16.49■□□□□ 0.23
LDLR-201ENST00000252444 MCM10Q7L590 875 aa16.48■□□□□ 0.23
LDLR-201ENST00000252444 MAP3K19Q56UN5 1328 aa16.48■□□□□ 0.23
LDLR-201ENST00000252444 KRT32Q14532 448 aa16.48■□□□□ 0.23
LDLR-201ENST00000252444 DHX16O60231 1041 aaKnown RBP16.48■□□□□ 0.23
LDLR-201ENST00000252444 XBP1P17861 261 aa16.48■□□□□ 0.23
LDLR-201ENST00000252444 NUCB2P80303 420 aa16.47■□□□□ 0.23
LDLR-201ENST00000252444 CARD14Q9BXL6 1004 aa16.47■□□□□ 0.23
LDLR-201ENST00000252444 RABEP1Q15276 862 aa16.47■□□□□ 0.23
LDLR-201ENST00000252444 NYXQ9GZU5 481 aa16.47■□□□□ 0.23
LDLR-201ENST00000252444 ADAMTS2O95450 1211 aa16.47■□□□□ 0.23
LDLR-201ENST00000252444 PTMAP06454 111 aaKnown RBP16.47■□□□□ 0.23
LDLR-201ENST00000252444 IL13P35225 146 aa16.46■□□□□ 0.23
LDLR-201ENST00000252444 HSPA2P54652 639 aa16.46■□□□□ 0.23
LDLR-201ENST00000252444 RSPH6AQ9H0K4 717 aa16.46■□□□□ 0.23
LDLR-201ENST00000252444 MBIPQ9NS73 344 aa16.46■□□□□ 0.23
LDLR-201ENST00000252444 CWC25Q9NXE8 425 aaPredicted RBP16.46■□□□□ 0.23
LDLR-201ENST00000252444 KIAA0232Q92628 1395 aa16.46■□□□□ 0.23
LDLR-201ENST00000252444 H3BQV1 296 aa16.46■□□□□ 0.22
LDLR-201ENST00000252444 FLIIQ13045 1269 aa16.46■□□□□ 0.22
LDLR-201ENST00000252444 IFFO2Q5TF58 517 aa16.46■□□□□ 0.22
LDLR-201ENST00000252444 CDC5LQ99459 802 aaKnown RBP16.46■□□□□ 0.22
LDLR-201ENST00000252444 CTDP1Q9Y5B0 961 aaPredicted RBP16.46■□□□□ 0.22
LDLR-201ENST00000252444 ERBB4Q15303 1308 aa16.46■□□□□ 0.22
LDLR-201ENST00000252444 CHD1LQ86WJ1 897 aa16.45■□□□□ 0.22
LDLR-201ENST00000252444 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.45■□□□□ 0.22
LDLR-201ENST00000252444 AK7Q96M32 723 aa16.45■□□□□ 0.22
LDLR-201ENST00000252444 ZNF287Q9HBT7 754 aa16.45■□□□□ 0.22
LDLR-201ENST00000252444 IFIT1P09914 478 aaKnown RBP16.45■□□□□ 0.22
LDLR-201ENST00000252444 HSP90AB2PQ58FF8 381 aa16.45■□□□□ 0.22
LDLR-201ENST00000252444 GLRX3O76003 335 aaKnown RBP16.44■□□□□ 0.22
LDLR-201ENST00000252444 BRMS1Q9HCU9 246 aa16.44■□□□□ 0.22
LDLR-201ENST00000252444 QRICH2Q9H0J4 1663 aa16.44■□□□□ 0.22
LDLR-201ENST00000252444 SSH1Q8WYL5 1049 aa16.44■□□□□ 0.22
LDLR-201ENST00000252444 HOOK1Q9UJC3 728 aaKnown RBP16.44■□□□□ 0.22
LDLR-201ENST00000252444 PDZRN3Q9UPQ7 1066 aa16.44■□□□□ 0.22
LDLR-201ENST00000252444 NEXMIFQ5QGS0 1516 aa16.44■□□□□ 0.22
LDLR-201ENST00000252444 MYL6BP14649 208 aa16.44■□□□□ 0.22
LDLR-201ENST00000252444 MPRIPQ6WCQ1 1025 aa16.44■□□□□ 0.22
LDLR-201ENST00000252444 LNPKQ9C0E8 428 aa16.44■□□□□ 0.22
LDLR-201ENST00000252444 NBR1Q14596 966 aa16.43■□□□□ 0.22
LDLR-201ENST00000252444 WASHC4Q2M389 1173 aa16.43■□□□□ 0.22
LDLR-201ENST00000252444 NRXN1Q9ULB1 1477 aa16.43■□□□□ 0.22
LDLR-201ENST00000252444 ANKRD18BA2A2Z9 1011 aa16.43■□□□□ 0.22
LDLR-201ENST00000252444 CPLX1O14810 134 aa16.43■□□□□ 0.22
LDLR-201ENST00000252444 SRGAP3O43295 1099 aa16.43■□□□□ 0.22
LDLR-201ENST00000252444 BCAR3O75815 825 aa16.43■□□□□ 0.22
LDLR-201ENST00000252444 APPP05067 770 aa16.43■□□□□ 0.22
LDLR-201ENST00000252444 NCAPD2Q15021 1401 aa16.43■□□□□ 0.22
LDLR-201ENST00000252444 ERVV-2B6SEH9 535 aa16.43■□□□□ 0.22
LDLR-201ENST00000252444 SAFBQ15424 915 aaKnown RBP eCLIP16.43■□□□□ 0.22
LDLR-201ENST00000252444 CFAP65Q6ZU64 1925 aaKnown RBP16.42■□□□□ 0.22
LDLR-201ENST00000252444 ROBO2Q9HCK4 1378 aa16.42■□□□□ 0.22
LDLR-201ENST00000252444 RNMTO43148 476 aaKnown RBP16.42■□□□□ 0.22
LDLR-201ENST00000252444 PDCP20941 246 aa16.42■□□□□ 0.22
LDLR-201ENST00000252444 CCDC47Q96A33 483 aaKnown RBP16.42■□□□□ 0.22
LDLR-201ENST00000252444 CEP170BQ9Y4F5 1589 aaPredicted RBP16.42■□□□□ 0.22
LDLR-201ENST00000252444 SLC5A1P13866 664 aa16.42■□□□□ 0.22
LDLR-201ENST00000252444 TTF1Q15361 905 aaPredicted RBP16.42■□□□□ 0.22
LDLR-201ENST00000252444 ST5P78524 1137 aa16.41■□□□□ 0.22
LDLR-201ENST00000252444 EYA1Q99502 592 aa16.41■□□□□ 0.22
LDLR-201ENST00000252444 TMEM57Q8N5G2 664 aa16.41■□□□□ 0.22
LDLR-201ENST00000252444 C22orf23Q9BZE7 217 aa16.41■□□□□ 0.22
LDLR-201ENST00000252444 IFIT5Q13325 482 aaKnown RBP16.41■□□□□ 0.22
LDLR-201ENST00000252444 CAVIN4Q5BKX8 364 aa16.41■□□□□ 0.22
LDLR-201ENST00000252444 USHBP1Q8N6Y0 703 aa16.41■□□□□ 0.22
LDLR-201ENST00000252444 PIK3C2BO00750 1634 aa16.41■□□□□ 0.22
LDLR-201ENST00000252444 MYO3AQ8NEV4 1616 aa16.4■□□□□ 0.22
LDLR-201ENST00000252444 PPP4R3BQ5MIZ7 849 aa16.4■□□□□ 0.22
LDLR-201ENST00000252444 THRAP3Q9Y2W1 955 aaKnown RBP16.4■□□□□ 0.22
LDLR-201ENST00000252444 RICTORQ6R327 1708 aa16.4■□□□□ 0.22
LDLR-201ENST00000252444 HDAC1Q13547 482 aaPredicted RBP16.39■□□□□ 0.21
LDLR-201ENST00000252444 KSR2Q6VAB6 950 aa16.39■□□□□ 0.21
LDLR-201ENST00000252444 ZSCAN31Q96LW9 406 aaPredicted RBP16.39■□□□□ 0.21
LDLR-201ENST00000252444 MYD88Q99836 296 aa16.39■□□□□ 0.21
LDLR-201ENST00000252444 CHMP5Q9NZZ3 219 aa16.39■□□□□ 0.21
LDLR-201ENST00000252444 FER1L4A9Z1Z3 1794 aa16.39■□□□□ 0.21
LDLR-201ENST00000252444 DCCP43146 1447 aa16.39■□□□□ 0.21
LDLR-201ENST00000252444 UQCRFS1P1P0C7P4 283 aa16.38■□□□□ 0.21
LDLR-201ENST00000252444 USP31Q70CQ4 1352 aa16.38■□□□□ 0.21
LDLR-201ENST00000252444 TECPR2O15040 1411 aa16.38■□□□□ 0.21
LDLR-201ENST00000252444 MROH2AA6NES4 1674 aa16.38■□□□□ 0.21
LDLR-201ENST00000252444 CHAF1AQ13111 956 aaPredicted RBP16.38■□□□□ 0.21
LDLR-201ENST00000252444 MTHFSDQ2M296 383 aaKnown RBP16.38■□□□□ 0.21
LDLR-201ENST00000252444 CCDC152Q4G0S7 254 aa16.38■□□□□ 0.21
LDLR-201ENST00000252444 PARP10Q53GL7 1025 aa16.38■□□□□ 0.21
LDLR-201ENST00000252444 SPTY2D1Q68D10 685 aaPredicted RBP16.38■□□□□ 0.21
LDLR-201ENST00000252444 CWC22Q9HCG8 908 aaKnown RBP16.38■□□□□ 0.21
LDLR-201ENST00000252444 SF3A1Q15459 793 aaKnown RBP16.38■□□□□ 0.21
LDLR-201ENST00000252444 CCDC184Q52MB2 194 aa16.38■□□□□ 0.21
LDLR-201ENST00000252444 NFXL1Q6ZNB6 911 aa16.38■□□□□ 0.21
LDLR-201ENST00000252444 AEBP1Q8IUX7 1158 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms