Protein–RNA interactions for Protein: Q8C2A2

Tsen54, tRNA-splicing endonuclease subunit Sen54, mousemouse

Predictions only

Length 525 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tsen54Q8C2A2 Gm25239-201ENSMUST00000174915 86 ntBASIC28.7■■■□□ 2.18
Tsen54Q8C2A2 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Tsen54Q8C2A2 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Tsen54Q8C2A2 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
Tsen54Q8C2A2 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Tsen54Q8C2A2 Psd-208ENSMUST00000224556 2034 ntBASIC26.73■■□□□ 1.87
Tsen54Q8C2A2 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Tsen54Q8C2A2 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Tsen54Q8C2A2 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Tsen54Q8C2A2 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
Tsen54Q8C2A2 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Tsen54Q8C2A2 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Tsen54Q8C2A2 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Tsen54Q8C2A2 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Tsen54Q8C2A2 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Tsen54Q8C2A2 Gm15042-201ENSMUST00000120212 883 ntBASIC25.3■■□□□ 1.64
Tsen54Q8C2A2 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Tsen54Q8C2A2 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Tsen54Q8C2A2 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
Tsen54Q8C2A2 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Tsen54Q8C2A2 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Tsen54Q8C2A2 Gm15045-201ENSMUST00000117359 883 ntBASIC24.75■■□□□ 1.55
Tsen54Q8C2A2 Gm24109-201ENSMUST00000175489 103 ntBASIC24.74■■□□□ 1.55
Tsen54Q8C2A2 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Tsen54Q8C2A2 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Tsen54Q8C2A2 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Tsen54Q8C2A2 Gm42596-201ENSMUST00000196305 1958 ntBASIC24.42■■□□□ 1.5
Tsen54Q8C2A2 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Tsen54Q8C2A2 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Tsen54Q8C2A2 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Tsen54Q8C2A2 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Tsen54Q8C2A2 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Tsen54Q8C2A2 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC24.15■■□□□ 1.46
Tsen54Q8C2A2 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.15■■□□□ 1.46
Tsen54Q8C2A2 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC24.14■■□□□ 1.45
Tsen54Q8C2A2 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Tsen54Q8C2A2 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Tsen54Q8C2A2 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Tsen54Q8C2A2 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Tsen54Q8C2A2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Tsen54Q8C2A2 Gm23366-201ENSMUST00000175022 89 ntBASIC24.03■■□□□ 1.44
Tsen54Q8C2A2 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Tsen54Q8C2A2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Tsen54Q8C2A2 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
Tsen54Q8C2A2 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Tsen54Q8C2A2 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC23.76■■□□□ 1.39
Tsen54Q8C2A2 Gm10524-201ENSMUST00000181931 1893 ntBASIC23.7■■□□□ 1.39
Tsen54Q8C2A2 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Tsen54Q8C2A2 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Tsen54Q8C2A2 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Tsen54Q8C2A2 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Tsen54Q8C2A2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
Tsen54Q8C2A2 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Tsen54Q8C2A2 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Tsen54Q8C2A2 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC23.5■■□□□ 1.35
Tsen54Q8C2A2 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Tsen54Q8C2A2 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Tsen54Q8C2A2 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC23.4■■□□□ 1.34
Tsen54Q8C2A2 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
Tsen54Q8C2A2 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Tsen54Q8C2A2 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
Tsen54Q8C2A2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
Tsen54Q8C2A2 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Tsen54Q8C2A2 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC23.32■■□□□ 1.32
Tsen54Q8C2A2 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Tsen54Q8C2A2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC23.23■■□□□ 1.31
Tsen54Q8C2A2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
Tsen54Q8C2A2 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Tsen54Q8C2A2 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Tsen54Q8C2A2 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Tsen54Q8C2A2 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Tsen54Q8C2A2 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Tsen54Q8C2A2 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Tsen54Q8C2A2 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC23.07■■□□□ 1.28
Tsen54Q8C2A2 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
Tsen54Q8C2A2 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Tsen54Q8C2A2 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.05■■□□□ 1.28
Tsen54Q8C2A2 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Tsen54Q8C2A2 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Tsen54Q8C2A2 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Tsen54Q8C2A2 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Tsen54Q8C2A2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
Tsen54Q8C2A2 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC22.94■■□□□ 1.26
Tsen54Q8C2A2 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Tsen54Q8C2A2 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC22.9■■□□□ 1.26
Tsen54Q8C2A2 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC22.89■■□□□ 1.25
Tsen54Q8C2A2 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Tsen54Q8C2A2 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Tsen54Q8C2A2 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
Tsen54Q8C2A2 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Tsen54Q8C2A2 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Tsen54Q8C2A2 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Tsen54Q8C2A2 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22.74■■□□□ 1.23
Tsen54Q8C2A2 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Tsen54Q8C2A2 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Tsen54Q8C2A2 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Tsen54Q8C2A2 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22.66■■□□□ 1.22
Tsen54Q8C2A2 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
Tsen54Q8C2A2 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Tsen54Q8C2A2 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Retrieved 100 of 76,532 protein–RNA pairs in 165.4 ms