Protein–RNA interactions for Protein: Q8BQM7

Smco3, Single-pass membrane and coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco3Q8BQM7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Smco3Q8BQM7 Gm25239-201ENSMUST00000174915 86 ntBASIC27.09■■□□□ 1.93
Smco3Q8BQM7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
Smco3Q8BQM7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Smco3Q8BQM7 Psd-208ENSMUST00000224556 2034 ntBASIC26.05■■□□□ 1.76
Smco3Q8BQM7 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Smco3Q8BQM7 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Smco3Q8BQM7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Smco3Q8BQM7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Smco3Q8BQM7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Smco3Q8BQM7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Smco3Q8BQM7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Smco3Q8BQM7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Smco3Q8BQM7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Smco3Q8BQM7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC24.56■■□□□ 1.52
Smco3Q8BQM7 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Smco3Q8BQM7 Gm15042-201ENSMUST00000120212 883 ntBASIC24.52■■□□□ 1.52
Smco3Q8BQM7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Smco3Q8BQM7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Smco3Q8BQM7 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Smco3Q8BQM7 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Smco3Q8BQM7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Smco3Q8BQM7 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC24.26■■□□□ 1.47
Smco3Q8BQM7 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Smco3Q8BQM7 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
Smco3Q8BQM7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Smco3Q8BQM7 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Smco3Q8BQM7 Gm15045-201ENSMUST00000117359 883 ntBASIC24.06■■□□□ 1.44
Smco3Q8BQM7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Smco3Q8BQM7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Smco3Q8BQM7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Smco3Q8BQM7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
Smco3Q8BQM7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23.75■■□□□ 1.39
Smco3Q8BQM7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Smco3Q8BQM7 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Smco3Q8BQM7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC23.71■■□□□ 1.39
Smco3Q8BQM7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC23.7■■□□□ 1.38
Smco3Q8BQM7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Smco3Q8BQM7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Smco3Q8BQM7 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Smco3Q8BQM7 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.55■■□□□ 1.36
Smco3Q8BQM7 Gm10524-201ENSMUST00000181931 1893 ntBASIC23.53■■□□□ 1.36
Smco3Q8BQM7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Smco3Q8BQM7 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Smco3Q8BQM7 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Smco3Q8BQM7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Smco3Q8BQM7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Smco3Q8BQM7 Gm42596-201ENSMUST00000196305 1958 ntBASIC23.33■■□□□ 1.33
Smco3Q8BQM7 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Smco3Q8BQM7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.29■■□□□ 1.32
Smco3Q8BQM7 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Smco3Q8BQM7 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Smco3Q8BQM7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Smco3Q8BQM7 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Smco3Q8BQM7 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Smco3Q8BQM7 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Smco3Q8BQM7 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
Smco3Q8BQM7 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Smco3Q8BQM7 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Smco3Q8BQM7 Gm24109-201ENSMUST00000175489 103 ntBASIC23.05■■□□□ 1.28
Smco3Q8BQM7 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Smco3Q8BQM7 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Smco3Q8BQM7 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.24
Smco3Q8BQM7 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Smco3Q8BQM7 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Smco3Q8BQM7 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22.82■■□□□ 1.24
Smco3Q8BQM7 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Smco3Q8BQM7 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Smco3Q8BQM7 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC22.77■■□□□ 1.24
Smco3Q8BQM7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Smco3Q8BQM7 Gm23366-201ENSMUST00000175022 89 ntBASIC22.77■■□□□ 1.24
Smco3Q8BQM7 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Smco3Q8BQM7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Smco3Q8BQM7 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Smco3Q8BQM7 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Smco3Q8BQM7 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Smco3Q8BQM7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Smco3Q8BQM7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22.56■■□□□ 1.2
Smco3Q8BQM7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Smco3Q8BQM7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Smco3Q8BQM7 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC22.51■■□□□ 1.19
Smco3Q8BQM7 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
Smco3Q8BQM7 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Smco3Q8BQM7 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Smco3Q8BQM7 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Smco3Q8BQM7 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Smco3Q8BQM7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
Smco3Q8BQM7 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Smco3Q8BQM7 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Smco3Q8BQM7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
Smco3Q8BQM7 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Smco3Q8BQM7 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Smco3Q8BQM7 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Smco3Q8BQM7 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Smco3Q8BQM7 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
Smco3Q8BQM7 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Smco3Q8BQM7 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Smco3Q8BQM7 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Smco3Q8BQM7 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Smco3Q8BQM7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms