Protein–RNA interactions for Protein: A7VMS2

Gm11127, MHC classIb T15, mousemouse

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm11127A7VMS2 Gm25239-201ENSMUST00000174915 86 ntBASIC30.48■■■□□ 2.47
Gm11127A7VMS2 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Gm11127A7VMS2 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Gm11127A7VMS2 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC28.63■■■□□ 2.17
Gm11127A7VMS2 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Gm11127A7VMS2 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Gm11127A7VMS2 Psd-208ENSMUST00000224556 2034 ntBASIC28.23■■■□□ 2.11
Gm11127A7VMS2 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Gm11127A7VMS2 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Gm11127A7VMS2 Gm15042-201ENSMUST00000120212 883 ntBASIC27.15■■□□□ 1.94
Gm11127A7VMS2 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Gm11127A7VMS2 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Gm11127A7VMS2 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Gm11127A7VMS2 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Gm11127A7VMS2 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
Gm11127A7VMS2 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Gm11127A7VMS2 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
Gm11127A7VMS2 Gm15045-201ENSMUST00000117359 883 ntBASIC26.61■■□□□ 1.85
Gm11127A7VMS2 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Gm11127A7VMS2 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Gm11127A7VMS2 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Gm11127A7VMS2 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC26.34■■□□□ 1.81
Gm11127A7VMS2 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Gm11127A7VMS2 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Gm11127A7VMS2 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Gm11127A7VMS2 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Gm11127A7VMS2 Gm24109-201ENSMUST00000175489 103 ntBASIC26.15■■□□□ 1.78
Gm11127A7VMS2 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Gm11127A7VMS2 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
Gm11127A7VMS2 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
Gm11127A7VMS2 Gm42596-201ENSMUST00000196305 1958 ntBASIC25.85■■□□□ 1.73
Gm11127A7VMS2 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Gm11127A7VMS2 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Gm11127A7VMS2 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Gm11127A7VMS2 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Gm11127A7VMS2 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
Gm11127A7VMS2 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Gm11127A7VMS2 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Gm11127A7VMS2 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC25.58■■□□□ 1.69
Gm11127A7VMS2 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Gm11127A7VMS2 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.55■■□□□ 1.68
Gm11127A7VMS2 Gm23366-201ENSMUST00000175022 89 ntBASIC25.53■■□□□ 1.68
Gm11127A7VMS2 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Gm11127A7VMS2 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Gm11127A7VMS2 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC25.43■■□□□ 1.66
Gm11127A7VMS2 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Gm11127A7VMS2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Gm11127A7VMS2 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Gm11127A7VMS2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Gm11127A7VMS2 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC25.35■■□□□ 1.65
Gm11127A7VMS2 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Gm11127A7VMS2 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC25.22■■□□□ 1.63
Gm11127A7VMS2 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
Gm11127A7VMS2 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Gm11127A7VMS2 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Gm11127A7VMS2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
Gm11127A7VMS2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC24.99■■□□□ 1.59
Gm11127A7VMS2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
Gm11127A7VMS2 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24.88■■□□□ 1.57
Gm11127A7VMS2 Gm10524-201ENSMUST00000181931 1893 ntBASIC24.87■■□□□ 1.57
Gm11127A7VMS2 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Gm11127A7VMS2 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Gm11127A7VMS2 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
Gm11127A7VMS2 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Gm11127A7VMS2 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Gm11127A7VMS2 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Gm11127A7VMS2 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
Gm11127A7VMS2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
Gm11127A7VMS2 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
Gm11127A7VMS2 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Gm11127A7VMS2 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Gm11127A7VMS2 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Gm11127A7VMS2 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC24.38■■□□□ 1.49
Gm11127A7VMS2 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
Gm11127A7VMS2 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC24.38■■□□□ 1.49
Gm11127A7VMS2 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
Gm11127A7VMS2 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC24.35■■□□□ 1.49
Gm11127A7VMS2 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Gm11127A7VMS2 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC24.34■■□□□ 1.49
Gm11127A7VMS2 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Gm11127A7VMS2 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Gm11127A7VMS2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Gm11127A7VMS2 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Gm11127A7VMS2 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Gm11127A7VMS2 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Gm11127A7VMS2 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Gm11127A7VMS2 CT025624.2-201ENSMUST00000223609 1909 ntBASIC24.23■■□□□ 1.47
Gm11127A7VMS2 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC24.2■■□□□ 1.46
Gm11127A7VMS2 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Gm11127A7VMS2 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Gm11127A7VMS2 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Gm11127A7VMS2 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Gm11127A7VMS2 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.44
Gm11127A7VMS2 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
Gm11127A7VMS2 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
Gm11127A7VMS2 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Gm11127A7VMS2 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Gm11127A7VMS2 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24.03■■□□□ 1.44
Gm11127A7VMS2 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Gm11127A7VMS2 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 171.1 ms