Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.12■□□□□ 0.97
HTTP42858 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HTTP42858 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HTTP42858 MINOS1P3-201ENST00000457048 203 ntBASIC21.12■□□□□ 0.97
HTTP42858 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HTTP42858 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.12■□□□□ 0.97
HTTP42858 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.12■□□□□ 0.97
HTTP42858 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.12■□□□□ 0.97
HTTP42858 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HTTP42858 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HTTP42858 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HTTP42858 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC21.11■□□□□ 0.97
HTTP42858 PAM16-208ENST00000573553 722 ntTSL 2 BASIC21.11■□□□□ 0.97
HTTP42858 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
HTTP42858 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.11■□□□□ 0.97
HTTP42858 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.11■□□□□ 0.97
HTTP42858 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
HTTP42858 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
HTTP42858 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
HTTP42858 YBX2P1-201ENST00000394192 760 ntBASIC21.11■□□□□ 0.97
HTTP42858 AL591424.1-201ENST00000442569 1213 ntBASIC21.11■□□□□ 0.97
HTTP42858 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
HTTP42858 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC21.11■□□□□ 0.97
HTTP42858 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC21.11■□□□□ 0.97
HTTP42858 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.11■□□□□ 0.97
HTTP42858 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
HTTP42858 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 AC079834.2-201ENST00000609776 1949 ntBASIC21.11■□□□□ 0.97
HTTP42858 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.11■□□□□ 0.97
HTTP42858 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC21.11■□□□□ 0.97
HTTP42858 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HTTP42858 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.11■□□□□ 0.97
HTTP42858 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
HTTP42858 AC009237.14-201ENST00000609975 1594 ntBASIC21.11■□□□□ 0.97
HTTP42858 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HTTP42858 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.1■□□□□ 0.97
HTTP42858 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
HTTP42858 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.1■□□□□ 0.97
HTTP42858 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
HTTP42858 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
HTTP42858 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.1■□□□□ 0.97
HTTP42858 FGFR3P6-201ENST00000457012 610 ntBASIC21.1■□□□□ 0.97
HTTP42858 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HTTP42858 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.1■□□□□ 0.97
HTTP42858 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HTTP42858 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HTTP42858 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.1■□□□□ 0.97
HTTP42858 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
HTTP42858 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC21.1■□□□□ 0.97
HTTP42858 AC124864.1-201ENST00000623408 392 ntBASIC21.1■□□□□ 0.97
HTTP42858 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HTTP42858 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HTTP42858 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC21.09■□□□□ 0.97
HTTP42858 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.09■□□□□ 0.97
HTTP42858 VENTXP7-201ENST00000475503 772 ntBASIC21.09■□□□□ 0.97
HTTP42858 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC21.09■□□□□ 0.97
HTTP42858 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HTTP42858 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.09■□□□□ 0.97
HTTP42858 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
HTTP42858 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.09■□□□□ 0.97
HTTP42858 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
HTTP42858 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC21.09■□□□□ 0.97
HTTP42858 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC21.09■□□□□ 0.97
HTTP42858 AP006288.1-201ENST00000446065 395 ntBASIC21.09■□□□□ 0.97
HTTP42858 SCARNA2-201ENST00000458748 420 ntBASIC21.09■□□□□ 0.97
HTTP42858 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC21.09■□□□□ 0.97
HTTP42858 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC21.09■□□□□ 0.97
HTTP42858 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC21.09■□□□□ 0.97
HTTP42858 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HTTP42858 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.09■□□□□ 0.97
HTTP42858 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HTTP42858 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.09■□□□□ 0.97
HTTP42858 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
HTTP42858 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HTTP42858 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HTTP42858 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HTTP42858 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
HTTP42858 AL356488.2-201ENST00000602755 427 ntBASIC21.09■□□□□ 0.97
HTTP42858 AL355877.3-201ENST00000622820 899 ntBASIC21.09■□□□□ 0.97
HTTP42858 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.08■□□□□ 0.97
HTTP42858 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HTTP42858 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HTTP42858 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HTTP42858 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HTTP42858 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC21.08■□□□□ 0.97
HTTP42858 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC21.08■□□□□ 0.97
HTTP42858 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.08■□□□□ 0.97
HTTP42858 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
HTTP42858 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.08■□□□□ 0.97
HTTP42858 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms