Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 Y_RNA.566-201ENST00000384735 101 ntBASIC-3.29□□□□□ -2.94
VPS28Q9UK41 MIR5693-201ENST00000577722 73 ntBASIC-3.3□□□□□ -2.94
VPS28Q9UK41 Y_RNA.59-201ENST00000362828 102 ntBASIC-3.33□□□□□ -2.94
VPS28Q9UK41 MIR548X-201ENST00000580069 75 ntBASIC-3.33□□□□□ -2.94
VPS28Q9UK41 RNU6-742P-201ENST00000365289 107 ntBASIC-3.36□□□□□ -2.95
VPS28Q9UK41 Y_RNA.79-201ENST00000362992 113 ntBASIC-3.37□□□□□ -2.95
VPS28Q9UK41 Y_RNA.134-201ENST00000363435 105 ntBASIC-3.37□□□□□ -2.95
VPS28Q9UK41 RNU6-1047P-201ENST00000364418 107 ntBASIC-3.37□□□□□ -2.95
VPS28Q9UK41 RNU6-1275P-201ENST00000391087 107 ntBASIC-3.38□□□□□ -2.95
VPS28Q9UK41 RNU6-68P-201ENST00000516576 104 ntBASIC-3.38□□□□□ -2.95
VPS28Q9UK41 MIR548AJ2-201ENST00000408539 92 ntBASIC-3.4□□□□□ -2.95
VPS28Q9UK41 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-3.4□□□□□ -2.95
VPS28Q9UK41 SNORD113-3-201ENST00000364830 72 ntBASIC-3.41□□□□□ -2.96
VPS28Q9UK41 RNU6-1324P-201ENST00000384222 107 ntBASIC-3.41□□□□□ -2.96
VPS28Q9UK41 RNU6-912P-201ENST00000363800 104 ntBASIC-3.42□□□□□ -2.96
VPS28Q9UK41 Y_RNA.722-201ENST00000517279 114 ntBASIC-3.43□□□□□ -2.96
VPS28Q9UK41 RNU6-1312P-201ENST00000362425 108 ntBASIC-3.44□□□□□ -2.96
VPS28Q9UK41 RNU6-1277P-201ENST00000364561 107 ntBASIC-3.45□□□□□ -2.96
VPS28Q9UK41 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.45□□□□□ -2.96
VPS28Q9UK41 RNU6-446P-201ENST00000362827 106 ntBASIC-3.47□□□□□ -2.96
VPS28Q9UK41 RNY4P25-201ENST00000459254 96 ntBASIC-3.47□□□□□ -2.96
VPS28Q9UK41 Y_RNA.320-201ENST00000365144 102 ntBASIC-3.48□□□□□ -2.97
VPS28Q9UK41 Y_RNA.830-201ENST00000628531 96 ntBASIC-3.49□□□□□ -2.97
VPS28Q9UK41 MIR509-1-201ENST00000385265 94 ntBASIC-3.52□□□□□ -2.97
VPS28Q9UK41 MIR509-2-201ENST00000390724 91 ntBASIC-3.52□□□□□ -2.97
VPS28Q9UK41 RNA5SP106-201ENST00000517274 100 ntBASIC-3.54□□□□□ -2.98
VPS28Q9UK41 AL731768.1-201ENST00000603124 139 ntBASIC-3.56□□□□□ -2.98
VPS28Q9UK41 RNU6-987P-201ENST00000384759 104 ntBASIC-3.57□□□□□ -2.98
VPS28Q9UK41 MIRLET7A3-201ENST00000362116 74 ntBASIC-3.58□□□□□ -2.98
VPS28Q9UK41 RNU6-822P-201ENST00000362707 106 ntBASIC-3.6□□□□□ -2.99
VPS28Q9UK41 SNORA72.7-201ENST00000516349 94 ntBASIC-3.62□□□□□ -2.99
VPS28Q9UK41 MIR4317-201ENST00000637586 65 ntBASIC-3.62□□□□□ -2.99
VPS28Q9UK41 AC125388.1-201ENST00000459631 156 ntBASIC-3.64□□□□□ -2.99
VPS28Q9UK41 RNU4-33P-201ENST00000364316 85 ntBASIC-3.65□□□□□ -2.99
VPS28Q9UK41 SNORD113-4-201ENST00000364802 75 ntBASIC-3.65□□□□□ -2.99
VPS28Q9UK41 RNY4P10-201ENST00000365571 96 ntBASIC-3.65□□□□□ -2.99
VPS28Q9UK41 RNU6-1044P-201ENST00000384755 107 ntBASIC-3.65□□□□□ -2.99
VPS28Q9UK41 MIR633-201ENST00000384821 98 ntBASIC-3.65□□□□□ -2.99
VPS28Q9UK41 RNU6-829P-201ENST00000363700 112 ntBASIC-3.66□□□□□ -3
VPS28Q9UK41 RNU6-345P-201ENST00000517001 107 ntBASIC-3.66□□□□□ -3
VPS28Q9UK41 SNORD114-13-201ENST00000364377 74 ntBASIC-3.67□□□□□ -3
VPS28Q9UK41 Y_RNA.266-201ENST00000364678 96 ntBASIC-3.67□□□□□ -3
VPS28Q9UK41 MIR1254-1-201ENST00000408257 97 ntBASIC-3.68□□□□□ -3
VPS28Q9UK41 Y_RNA.657-201ENST00000515983 102 ntBASIC-3.68□□□□□ -3
VPS28Q9UK41 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-3.69□□□□□ -3
VPS28Q9UK41 RNU6-638P-201ENST00000516582 104 ntBASIC-3.7□□□□□ -3
VPS28Q9UK41 Y_RNA.434-201ENST00000384090 100 ntBASIC-3.71□□□□□ -3
VPS28Q9UK41 AC139453.2-201ENST00000487255 133 ntBASIC-3.75□□□□□ -3.01
VPS28Q9UK41 MIR548AL-201ENST00000578416 97 ntBASIC-3.75□□□□□ -3.01
VPS28Q9UK41 Y_RNA.63-201ENST00000362841 102 ntBASIC-3.76□□□□□ -3.01
VPS28Q9UK41 Y_RNA.612-201ENST00000410717 95 ntBASIC-3.76□□□□□ -3.01
VPS28Q9UK41 Y_RNA.382-201ENST00000365672 114 ntBASIC-3.77□□□□□ -3.01
VPS28Q9UK41 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-3.78□□□□□ -3.01
VPS28Q9UK41 AL359920.1-201ENST00000618332 176 ntBASIC-3.78□□□□□ -3.01
VPS28Q9UK41 Y_RNA.652-201ENST00000458902 102 ntBASIC-3.79□□□□□ -3.02
VPS28Q9UK41 AC079150.2-201ENST00000443733 78 ntBASIC-3.81□□□□□ -3.02
VPS28Q9UK41 RNU6-1169P-201ENST00000363537 103 ntBASIC-3.83□□□□□ -3.02
VPS28Q9UK41 RNU6-1204P-201ENST00000363948 107 ntBASIC-3.86□□□□□ -3.03
VPS28Q9UK41 MIR548H4-201ENST00000408689 111 ntBASIC-3.89□□□□□ -3.03
VPS28Q9UK41 Y_RNA.663-201ENST00000516043 101 ntBASIC-3.92□□□□□ -3.04
VPS28Q9UK41 Y_RNA.206-201ENST00000364136 102 ntBASIC-3.95□□□□□ -3.04
VPS28Q9UK41 RNU6-499P-201ENST00000365615 107 ntBASIC-3.96□□□□□ -3.04
VPS28Q9UK41 RNU6-1326P-201ENST00000391262 107 ntBASIC-3.97□□□□□ -3.04
VPS28Q9UK41 SNORD115.2-201ENST00000391126 59 ntBASIC-3.99□□□□□ -3.05
VPS28Q9UK41 RNU6-838P-201ENST00000363399 108 ntBASIC-4□□□□□ -3.05
VPS28Q9UK41 Y_RNA.520-201ENST00000384556 102 ntBASIC-4□□□□□ -3.05
VPS28Q9UK41 RNU6-808P-201ENST00000391233 108 ntBASIC-4□□□□□ -3.05
VPS28Q9UK41 Y_RNA.260-201ENST00000364628 101 ntBASIC-4.01□□□□□ -3.05
VPS28Q9UK41 RNA5SP224-201ENST00000365069 126 ntBASIC-4.03□□□□□ -3.05
VPS28Q9UK41 SNORD115-45-201ENST00000391078 81 ntBASIC-4.03□□□□□ -3.05
VPS28Q9UK41 RNU6-737P-201ENST00000365370 107 ntBASIC-4.04□□□□□ -3.06
VPS28Q9UK41 Y_RNA.379-201ENST00000365653 102 ntBASIC-4.05□□□□□ -3.06
VPS28Q9UK41 RNU6-836P-201ENST00000362920 107 ntBASIC-4.06□□□□□ -3.06
VPS28Q9UK41 Y_RNA.345-201ENST00000365384 92 ntBASIC-4.07□□□□□ -3.06
VPS28Q9UK41 MIR656-201ENST00000385224 78 ntBASIC-4.08□□□□□ -3.06
VPS28Q9UK41 RNU6-1008P-201ENST00000384160 104 ntBASIC-4.1□□□□□ -3.07
VPS28Q9UK41 RNU6-665P-201ENST00000384639 107 ntBASIC-4.1□□□□□ -3.07
VPS28Q9UK41 SNORD45C-201ENST00000383893 79 ntBASIC-4.12□□□□□ -3.07
VPS28Q9UK41 RNU6-753P-201ENST00000363926 107 ntBASIC-4.16□□□□□ -3.08
VPS28Q9UK41 RNU6-936P-201ENST00000384005 107 ntBASIC-4.16□□□□□ -3.08
VPS28Q9UK41 RNU6-1161P-201ENST00000516176 102 ntBASIC-4.16□□□□□ -3.08
VPS28Q9UK41 Y_RNA.335-201ENST00000365299 96 ntBASIC-4.17□□□□□ -3.08
VPS28Q9UK41 RNU6-854P-201ENST00000364036 107 ntBASIC-4.2□□□□□ -3.08
VPS28Q9UK41 RNU6-1340P-201ENST00000384438 107 ntBASIC-4.21□□□□□ -3.08
VPS28Q9UK41 MIR124-1-201ENST00000385275 85 ntBASIC-4.24□□□□□ -3.09
VPS28Q9UK41 MIR548AH-201ENST00000637109 76 ntBASIC-4.25□□□□□ -3.09
VPS28Q9UK41 RNU6-614P-201ENST00000384369 107 ntBASIC-4.29□□□□□ -3.1
VPS28Q9UK41 U6.59-201ENST00000615686 107 ntBASIC-4.29□□□□□ -3.1
VPS28Q9UK41 RNU6-930P-201ENST00000390938 100 ntBASIC-4.3□□□□□ -3.1
VPS28Q9UK41 Y_RNA.137-201ENST00000363455 112 ntBASIC-4.31□□□□□ -3.1
VPS28Q9UK41 RNU6-59P-201ENST00000384787 107 ntBASIC-4.33□□□□□ -3.1
VPS28Q9UK41 RNU6-986P-201ENST00000363133 102 ntBASIC-4.35□□□□□ -3.11
VPS28Q9UK41 MIR548F3-201ENST00000408509 87 ntBASIC-4.39□□□□□ -3.11
VPS28Q9UK41 RNU6-1128P-201ENST00000362825 109 ntBASIC-4.4□□□□□ -3.11
VPS28Q9UK41 RNY4P13-201ENST00000384284 96 ntBASIC-4.46□□□□□ -3.12
VPS28Q9UK41 RNU6-788P-201ENST00000390967 104 ntBASIC-4.46□□□□□ -3.12
VPS28Q9UK41 MIR545-201ENST00000385085 106 ntBASIC-4.59□□□□□ -3.14
VPS28Q9UK41 DLEU2_4.2-201ENST00000616613 58 ntBASIC-4.63□□□□□ -3.15
VPS28Q9UK41 MTND4LP19-201ENST00000403051 166 ntBASIC-4.7□□□□□ -3.16
VPS28Q9UK41 RNU6-422P-201ENST00000384632 107 ntBASIC-4.72□□□□□ -3.17
Retrieved 100 of 98,524 protein–RNA pairs in 284.1 ms