Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 Y_RNA.685-201ENST00000516532 108 ntBASIC-2.49□□□□□ -2.81
LHX3Q9UBR4 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.5□□□□□ -2.81
LHX3Q9UBR4 Y_RNA.134-201ENST00000363435 105 ntBASIC-2.5□□□□□ -2.81
LHX3Q9UBR4 RNU6-912P-201ENST00000363800 104 ntBASIC-2.5□□□□□ -2.81
LHX3Q9UBR4 RNU6-471P-201ENST00000383944 106 ntBASIC-2.5□□□□□ -2.81
LHX3Q9UBR4 RNU6-176P-201ENST00000517196 105 ntBASIC-2.5□□□□□ -2.81
LHX3Q9UBR4 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.5□□□□□ -2.81
LHX3Q9UBR4 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.51□□□□□ -2.81
LHX3Q9UBR4 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.52□□□□□ -2.81
LHX3Q9UBR4 AC114801.3-201ENST00000510231 177 ntBASIC-2.52□□□□□ -2.81
LHX3Q9UBR4 RNU6-742P-201ENST00000365289 107 ntBASIC-2.53□□□□□ -2.81
LHX3Q9UBR4 RNY4P25-201ENST00000459254 96 ntBASIC-2.53□□□□□ -2.81
LHX3Q9UBR4 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.55□□□□□ -2.82
LHX3Q9UBR4 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.55□□□□□ -2.82
LHX3Q9UBR4 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.56□□□□□ -2.82
LHX3Q9UBR4 MIR548X-201ENST00000580069 75 ntBASIC-2.57□□□□□ -2.82
LHX3Q9UBR4 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.58□□□□□ -2.82
LHX3Q9UBR4 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.59□□□□□ -2.82
LHX3Q9UBR4 Y_RNA.511-201ENST00000384514 103 ntBASIC-2.6□□□□□ -2.83
LHX3Q9UBR4 AL731768.1-201ENST00000603124 139 ntBASIC-2.61□□□□□ -2.83
LHX3Q9UBR4 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.62□□□□□ -2.83
LHX3Q9UBR4 RNU6-446P-201ENST00000362827 106 ntBASIC-2.62□□□□□ -2.83
LHX3Q9UBR4 RNU6-1275P-201ENST00000391087 107 ntBASIC-2.62□□□□□ -2.83
LHX3Q9UBR4 MIR509-1-201ENST00000385265 94 ntBASIC-2.63□□□□□ -2.83
LHX3Q9UBR4 MIR509-2-201ENST00000390724 91 ntBASIC-2.63□□□□□ -2.83
LHX3Q9UBR4 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.64□□□□□ -2.83
LHX3Q9UBR4 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.65□□□□□ -2.83
LHX3Q9UBR4 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.65□□□□□ -2.83
LHX3Q9UBR4 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.65□□□□□ -2.83
LHX3Q9UBR4 MIR1254-1-201ENST00000408257 97 ntBASIC-2.66□□□□□ -2.84
LHX3Q9UBR4 RNU6-345P-201ENST00000517001 107 ntBASIC-2.66□□□□□ -2.84
LHX3Q9UBR4 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.68□□□□□ -2.84
LHX3Q9UBR4 RNA5SP106-201ENST00000517274 100 ntBASIC-2.69□□□□□ -2.84
LHX3Q9UBR4 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.71□□□□□ -2.84
LHX3Q9UBR4 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.71□□□□□ -2.84
LHX3Q9UBR4 RNY4P10-201ENST00000365571 96 ntBASIC-2.72□□□□□ -2.84
LHX3Q9UBR4 SNORD114-13-201ENST00000364377 74 ntBASIC-2.74□□□□□ -2.85
LHX3Q9UBR4 SNORD113-4-201ENST00000364802 75 ntBASIC-2.75□□□□□ -2.85
LHX3Q9UBR4 RNU6-987P-201ENST00000384759 104 ntBASIC-2.75□□□□□ -2.85
LHX3Q9UBR4 MIR633-201ENST00000384821 98 ntBASIC-2.75□□□□□ -2.85
LHX3Q9UBR4 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.75□□□□□ -2.85
LHX3Q9UBR4 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.75□□□□□ -2.85
LHX3Q9UBR4 RNU6-822P-201ENST00000362707 106 ntBASIC-2.77□□□□□ -2.85
LHX3Q9UBR4 AL359920.1-201ENST00000618332 176 ntBASIC-2.78□□□□□ -2.85
LHX3Q9UBR4 RNU6-829P-201ENST00000363700 112 ntBASIC-2.79□□□□□ -2.86
LHX3Q9UBR4 Y_RNA.657-201ENST00000515983 102 ntBASIC-2.79□□□□□ -2.86
LHX3Q9UBR4 MIR4317-201ENST00000637586 65 ntBASIC-2.8□□□□□ -2.86
LHX3Q9UBR4 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.81□□□□□ -2.86
LHX3Q9UBR4 RNU4-33P-201ENST00000364316 85 ntBASIC-2.81□□□□□ -2.86
LHX3Q9UBR4 AC125388.1-201ENST00000459631 156 ntBASIC-2.83□□□□□ -2.86
LHX3Q9UBR4 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.83□□□□□ -2.86
LHX3Q9UBR4 RNU6-737P-201ENST00000365370 107 ntBASIC-2.86□□□□□ -2.87
LHX3Q9UBR4 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.87□□□□□ -2.87
LHX3Q9UBR4 SNORA72.7-201ENST00000516349 94 ntBASIC-2.87□□□□□ -2.87
LHX3Q9UBR4 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-2.89□□□□□ -2.87
LHX3Q9UBR4 AC139453.2-201ENST00000487255 133 ntBASIC-2.9□□□□□ -2.87
LHX3Q9UBR4 RNU6-638P-201ENST00000516582 104 ntBASIC-2.9□□□□□ -2.87
LHX3Q9UBR4 MIR548AL-201ENST00000578416 97 ntBASIC-2.9□□□□□ -2.87
LHX3Q9UBR4 SNORD115-45-201ENST00000391078 81 ntBASIC-2.91□□□□□ -2.88
LHX3Q9UBR4 AC079150.2-201ENST00000443733 78 ntBASIC-2.95□□□□□ -2.88
LHX3Q9UBR4 MIR656-201ENST00000385224 78 ntBASIC-2.97□□□□□ -2.88
LHX3Q9UBR4 RNA5SP224-201ENST00000365069 126 ntBASIC-2.98□□□□□ -2.89
LHX3Q9UBR4 MIR548H4-201ENST00000408689 111 ntBASIC-2.98□□□□□ -2.89
LHX3Q9UBR4 RNU6-1204P-201ENST00000363948 107 ntBASIC-3.01□□□□□ -2.89
LHX3Q9UBR4 Y_RNA.206-201ENST00000364136 102 ntBASIC-3.01□□□□□ -2.89
LHX3Q9UBR4 SNORD115.2-201ENST00000391126 59 ntBASIC-3.01□□□□□ -2.89
LHX3Q9UBR4 RNU6-1161P-201ENST00000516176 102 ntBASIC-3.01□□□□□ -2.89
LHX3Q9UBR4 RNU6-854P-201ENST00000364036 107 ntBASIC-3.02□□□□□ -2.89
LHX3Q9UBR4 Y_RNA.260-201ENST00000364628 101 ntBASIC-3.02□□□□□ -2.89
LHX3Q9UBR4 RNU6-1008P-201ENST00000384160 104 ntBASIC-3.04□□□□□ -2.9
LHX3Q9UBR4 MIR124-1-201ENST00000385275 85 ntBASIC-3.04□□□□□ -2.9
LHX3Q9UBR4 SNORD45C-201ENST00000383893 79 ntBASIC-3.05□□□□□ -2.9
LHX3Q9UBR4 RNU6-665P-201ENST00000384639 107 ntBASIC-3.05□□□□□ -2.9
LHX3Q9UBR4 RNU6-499P-201ENST00000365615 107 ntBASIC-3.06□□□□□ -2.9
LHX3Q9UBR4 RNU6-1340P-201ENST00000384438 107 ntBASIC-3.06□□□□□ -2.9
LHX3Q9UBR4 Y_RNA.520-201ENST00000384556 102 ntBASIC-3.06□□□□□ -2.9
LHX3Q9UBR4 RNU6-1326P-201ENST00000391262 107 ntBASIC-3.06□□□□□ -2.9
LHX3Q9UBR4 RNU6-836P-201ENST00000362920 107 ntBASIC-3.07□□□□□ -2.9
LHX3Q9UBR4 Y_RNA.379-201ENST00000365653 102 ntBASIC-3.08□□□□□ -2.9
LHX3Q9UBR4 MIR548AH-201ENST00000637109 76 ntBASIC-3.08□□□□□ -2.9
LHX3Q9UBR4 RNU6-838P-201ENST00000363399 108 ntBASIC-3.1□□□□□ -2.91
LHX3Q9UBR4 Y_RNA.137-201ENST00000363455 112 ntBASIC-3.11□□□□□ -2.91
LHX3Q9UBR4 RNU6-808P-201ENST00000391233 108 ntBASIC-3.11□□□□□ -2.91
LHX3Q9UBR4 Y_RNA.335-201ENST00000365299 96 ntBASIC-3.12□□□□□ -2.91
LHX3Q9UBR4 Y_RNA.345-201ENST00000365384 92 ntBASIC-3.12□□□□□ -2.91
LHX3Q9UBR4 RNU6-753P-201ENST00000363926 107 ntBASIC-3.17□□□□□ -2.92
LHX3Q9UBR4 RNU6-936P-201ENST00000384005 107 ntBASIC-3.18□□□□□ -2.92
LHX3Q9UBR4 RNU6-986P-201ENST00000363133 102 ntBASIC-3.27□□□□□ -2.93
LHX3Q9UBR4 RNU6-788P-201ENST00000390967 104 ntBASIC-3.28□□□□□ -2.93
LHX3Q9UBR4 RNU6-614P-201ENST00000384369 107 ntBASIC-3.31□□□□□ -2.94
LHX3Q9UBR4 RNU6-930P-201ENST00000390938 100 ntBASIC-3.31□□□□□ -2.94
LHX3Q9UBR4 U6.59-201ENST00000615686 107 ntBASIC-3.31□□□□□ -2.94
LHX3Q9UBR4 RNY4P13-201ENST00000384284 96 ntBASIC-3.34□□□□□ -2.94
LHX3Q9UBR4 RNU6-59P-201ENST00000384787 107 ntBASIC-3.34□□□□□ -2.94
LHX3Q9UBR4 MIR545-201ENST00000385085 106 ntBASIC-3.34□□□□□ -2.94
LHX3Q9UBR4 RNU6-422P-201ENST00000384632 107 ntBASIC-3.38□□□□□ -2.95
LHX3Q9UBR4 MIR548F3-201ENST00000408509 87 ntBASIC-3.38□□□□□ -2.95
LHX3Q9UBR4 RNU6-1128P-201ENST00000362825 109 ntBASIC-3.39□□□□□ -2.95
LHX3Q9UBR4 RNA5SP449-201ENST00000516871 130 ntBASIC-3.41□□□□□ -2.96
LHX3Q9UBR4 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-3.41□□□□□ -2.96
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms