Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 Y_RNA.206-201ENST00000364136 102 ntBASIC-2.96□□□□□ -2.88
VCX3AQ9NNX9 RNA5SP224-201ENST00000365069 126 ntBASIC-2.96□□□□□ -2.88
VCX3AQ9NNX9 RNU6-471P-201ENST00000383944 106 ntBASIC-2.97□□□□□ -2.88
VCX3AQ9NNX9 MIR656-201ENST00000385224 78 ntBASIC-2.97□□□□□ -2.88
VCX3AQ9NNX9 RNY4P29-201ENST00000410801 97 ntBASIC-2.97□□□□□ -2.88
VCX3AQ9NNX9 SNORA26.2-201ENST00000390922 122 ntBASIC-2.98□□□□□ -2.89
VCX3AQ9NNX9 RNA5SP225-201ENST00000410874 135 ntBASIC-2.98□□□□□ -2.89
VCX3AQ9NNX9 AC114801.3-201ENST00000510231 177 ntBASIC-2.98□□□□□ -2.89
VCX3AQ9NNX9 MIR548H4-201ENST00000408689 111 ntBASIC-2.99□□□□□ -2.89
VCX3AQ9NNX9 Y_RNA.228-201ENST00000364346 98 ntBASIC-3□□□□□ -2.89
VCX3AQ9NNX9 SNORD115.2-201ENST00000391126 59 ntBASIC-3□□□□□ -2.89
VCX3AQ9NNX9 Y_RNA.612-201ENST00000410717 95 ntBASIC-3□□□□□ -2.89
VCX3AQ9NNX9 SNORD45C-201ENST00000383893 79 ntBASIC-3.01□□□□□ -2.89
VCX3AQ9NNX9 Y_RNA.388-201ENST00000383919 113 ntBASIC-3.01□□□□□ -2.89
VCX3AQ9NNX9 SNORD78.1-201ENST00000390866 65 ntBASIC-3.01□□□□□ -2.89
VCX3AQ9NNX9 AL359920.1-201ENST00000618332 176 ntBASIC-3.01□□□□□ -2.89
VCX3AQ9NNX9 MIR548AL-201ENST00000578416 97 ntBASIC-3.02□□□□□ -2.89
VCX3AQ9NNX9 RNU6-836P-201ENST00000362920 107 ntBASIC-3.03□□□□□ -2.89
VCX3AQ9NNX9 Y_RNA.134-201ENST00000363435 105 ntBASIC-3.03□□□□□ -2.89
VCX3AQ9NNX9 RNU6-776P-201ENST00000364403 104 ntBASIC-3.03□□□□□ -2.89
VCX3AQ9NNX9 RNU6-1022P-201ENST00000365049 104 ntBASIC-3.03□□□□□ -2.89
VCX3AQ9NNX9 RNU6-737P-201ENST00000365370 107 ntBASIC-3.03□□□□□ -2.89
VCX3AQ9NNX9 RNA5SP170-201ENST00000517150 101 ntBASIC-3.04□□□□□ -2.9
VCX3AQ9NNX9 RNU4-33P-201ENST00000364316 85 ntBASIC-3.05□□□□□ -2.9
VCX3AQ9NNX9 MIR4662A-201ENST00000637499 67 ntBASIC-3.05□□□□□ -2.9
VCX3AQ9NNX9 SNORD113-4-201ENST00000364802 75 ntBASIC-3.06□□□□□ -2.9
VCX3AQ9NNX9 Y_RNA.830-201ENST00000628531 96 ntBASIC-3.06□□□□□ -2.9
VCX3AQ9NNX9 U2.22-201ENST00000636441 106 ntBASIC-3.06□□□□□ -2.9
VCX3AQ9NNX9 RNU6-1298P-201ENST00000362456 101 ntBASIC-3.07□□□□□ -2.9
VCX3AQ9NNX9 Y_RNA.79-201ENST00000362992 113 ntBASIC-3.07□□□□□ -2.9
VCX3AQ9NNX9 RNU6-1340P-201ENST00000384438 107 ntBASIC-3.07□□□□□ -2.9
VCX3AQ9NNX9 Y_RNA.663-201ENST00000516043 101 ntBASIC-3.07□□□□□ -2.9
VCX3AQ9NNX9 RNU6-1326P-201ENST00000391262 107 ntBASIC-3.08□□□□□ -2.9
VCX3AQ9NNX9 RNU6-854P-201ENST00000364036 107 ntBASIC-3.1□□□□□ -2.91
VCX3AQ9NNX9 Y_RNA.266-201ENST00000364678 96 ntBASIC-3.1□□□□□ -2.91
VCX3AQ9NNX9 Y_RNA.335-201ENST00000365299 96 ntBASIC-3.1□□□□□ -2.91
VCX3AQ9NNX9 Y_RNA.53-201ENST00000362765 102 ntBASIC-3.11□□□□□ -2.91
VCX3AQ9NNX9 RNU6-1204P-201ENST00000363948 107 ntBASIC-3.11□□□□□ -2.91
VCX3AQ9NNX9 RNA5SP93-201ENST00000362525 114 ntBASIC-3.12□□□□□ -2.91
VCX3AQ9NNX9 Y_RNA.403-201ENST00000383977 101 ntBASIC-3.12□□□□□ -2.91
VCX3AQ9NNX9 RNU6-1191P-201ENST00000516799 107 ntBASIC-3.12□□□□□ -2.91
VCX3AQ9NNX9 Y_RNA.652-201ENST00000458902 102 ntBASIC-3.13□□□□□ -2.91
VCX3AQ9NNX9 Y_RNA.345-201ENST00000365384 92 ntBASIC-3.14□□□□□ -2.91
VCX3AQ9NNX9 RNU6-808P-201ENST00000391233 108 ntBASIC-3.15□□□□□ -2.91
VCX3AQ9NNX9 RNU6-829P-201ENST00000363700 112 ntBASIC-3.16□□□□□ -2.92
VCX3AQ9NNX9 RNY4P7-201ENST00000364600 96 ntBASIC-3.16□□□□□ -2.92
VCX3AQ9NNX9 RNU6-1008P-201ENST00000384160 104 ntBASIC-3.17□□□□□ -2.92
VCX3AQ9NNX9 MIR633-201ENST00000384821 98 ntBASIC-3.17□□□□□ -2.92
VCX3AQ9NNX9 RNU6-1044P-201ENST00000384755 107 ntBASIC-3.19□□□□□ -2.92
VCX3AQ9NNX9 SNORD114-13-201ENST00000364377 74 ntBASIC-3.2□□□□□ -2.92
VCX3AQ9NNX9 MIR1302-4-201ENST00000408701 150 ntBASIC-3.22□□□□□ -2.92
VCX3AQ9NNX9 Y_RNA.658-201ENST00000515990 97 ntBASIC-3.23□□□□□ -2.93
VCX3AQ9NNX9 RNU6-1161P-201ENST00000516176 102 ntBASIC-3.23□□□□□ -2.93
VCX3AQ9NNX9 Y_RNA.137-201ENST00000363455 112 ntBASIC-3.24□□□□□ -2.93
VCX3AQ9NNX9 Y_RNA.421-201ENST00000384052 101 ntBASIC-3.24□□□□□ -2.93
VCX3AQ9NNX9 RNU6-838P-201ENST00000363399 108 ntBASIC-3.26□□□□□ -2.93
VCX3AQ9NNX9 Y_RNA.379-201ENST00000365653 102 ntBASIC-3.26□□□□□ -2.93
VCX3AQ9NNX9 SNORD115-45-201ENST00000391078 81 ntBASIC-3.28□□□□□ -2.93
VCX3AQ9NNX9 RNU6-788P-201ENST00000390967 104 ntBASIC-3.29□□□□□ -2.94
VCX3AQ9NNX9 Y_RNA.685-201ENST00000516532 108 ntBASIC-3.29□□□□□ -2.94
VCX3AQ9NNX9 MIR124-1-201ENST00000385275 85 ntBASIC-3.3□□□□□ -2.94
VCX3AQ9NNX9 AC079150.2-201ENST00000443733 78 ntBASIC-3.31□□□□□ -2.94
VCX3AQ9NNX9 Y_RNA.186-201ENST00000363899 92 ntBASIC-3.33□□□□□ -2.94
VCX3AQ9NNX9 MIR545-201ENST00000385085 106 ntBASIC-3.33□□□□□ -2.94
VCX3AQ9NNX9 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-3.34□□□□□ -2.94
VCX3AQ9NNX9 RNU6-59P-201ENST00000384787 107 ntBASIC-3.35□□□□□ -2.95
VCX3AQ9NNX9 RNU6-422P-201ENST00000384632 107 ntBASIC-3.36□□□□□ -2.95
VCX3AQ9NNX9 MIR509-1-201ENST00000385265 94 ntBASIC-3.37□□□□□ -2.95
VCX3AQ9NNX9 MIR509-2-201ENST00000390724 91 ntBASIC-3.37□□□□□ -2.95
VCX3AQ9NNX9 MIR548AH-201ENST00000637109 76 ntBASIC-3.37□□□□□ -2.95
VCX3AQ9NNX9 RNU6-803P-201ENST00000516034 102 ntBASIC-3.38□□□□□ -2.95
VCX3AQ9NNX9 AC125388.1-201ENST00000459631 156 ntBASIC-3.39□□□□□ -2.95
VCX3AQ9NNX9 RNU6-986P-201ENST00000363133 102 ntBASIC-3.4□□□□□ -2.95
VCX3AQ9NNX9 Y_RNA.204-201ENST00000364112 102 ntBASIC-3.4□□□□□ -2.95
VCX3AQ9NNX9 RNU6-753P-201ENST00000363926 107 ntBASIC-3.44□□□□□ -2.96
VCX3AQ9NNX9 RNU6-1275P-201ENST00000391087 107 ntBASIC-3.44□□□□□ -2.96
VCX3AQ9NNX9 RNY4-201ENST00000516507 96 ntBASIC-3.44□□□□□ -2.96
VCX3AQ9NNX9 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-3.45□□□□□ -2.96
VCX3AQ9NNX9 RNU6-936P-201ENST00000384005 107 ntBASIC-3.5□□□□□ -2.97
VCX3AQ9NNX9 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.51□□□□□ -2.97
VCX3AQ9NNX9 RNU6-930P-201ENST00000390938 100 ntBASIC-3.51□□□□□ -2.97
VCX3AQ9NNX9 RNU6-499P-201ENST00000365615 107 ntBASIC-3.52□□□□□ -2.97
VCX3AQ9NNX9 RNU6-1043P-201ENST00000410355 99 ntBASIC-3.52□□□□□ -2.97
VCX3AQ9NNX9 MIR548F3-201ENST00000408509 87 ntBASIC-3.53□□□□□ -2.97
VCX3AQ9NNX9 RNA5SP106-201ENST00000517274 100 ntBASIC-3.54□□□□□ -2.98
VCX3AQ9NNX9 RNU6-987P-201ENST00000384759 104 ntBASIC-3.55□□□□□ -2.98
VCX3AQ9NNX9 Y_RNA.406-201ENST00000383984 100 ntBASIC-3.56□□□□□ -2.98
VCX3AQ9NNX9 Y_RNA.657-201ENST00000515983 102 ntBASIC-3.56□□□□□ -2.98
VCX3AQ9NNX9 RNY4P10-201ENST00000365571 96 ntBASIC-3.58□□□□□ -2.98
VCX3AQ9NNX9 RNU6-665P-201ENST00000384639 107 ntBASIC-3.68□□□□□ -3
VCX3AQ9NNX9 RNU6-638P-201ENST00000516582 104 ntBASIC-3.72□□□□□ -3
VCX3AQ9NNX9 RNU6-614P-201ENST00000384369 107 ntBASIC-3.74□□□□□ -3.01
VCX3AQ9NNX9 U6.59-201ENST00000615686 107 ntBASIC-3.74□□□□□ -3.01
VCX3AQ9NNX9 Y_RNA.566-201ENST00000384735 101 ntBASIC-3.75□□□□□ -3.01
VCX3AQ9NNX9 DLEU2_4.2-201ENST00000616613 58 ntBASIC-3.75□□□□□ -3.01
VCX3AQ9NNX9 RNU6-1121P-201ENST00000516802 109 ntBASIC-3.78□□□□□ -3.01
VCX3AQ9NNX9 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-3.78□□□□□ -3.01
VCX3AQ9NNX9 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-3.8□□□□□ -3.02
VCX3AQ9NNX9 RNU6-1024P-201ENST00000384199 107 ntBASIC-3.87□□□□□ -3.03
VCX3AQ9NNX9 RNU4-85P-201ENST00000364675 123 ntBASIC-3.88□□□□□ -3.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms