Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.53□□□□□ -2.81
RFX3P48380 SNORD78.1-201ENST00000390866 65 ntBASIC-2.53□□□□□ -2.81
RFX3P48380 RNU6-230P-201ENST00000362457 104 ntBASIC-2.54□□□□□ -2.82
RFX3P48380 RNU6-822P-201ENST00000362707 106 ntBASIC-2.56□□□□□ -2.82
RFX3P48380 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.57□□□□□ -2.82
RFX3P48380 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.57□□□□□ -2.82
RFX3P48380 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.57□□□□□ -2.82
RFX3P48380 Y_RNA.43-201ENST00000362670 111 ntBASIC-2.58□□□□□ -2.82
RFX3P48380 RNU6-776P-201ENST00000364403 104 ntBASIC-2.58□□□□□ -2.82
RFX3P48380 RNU6-1022P-201ENST00000365049 104 ntBASIC-2.58□□□□□ -2.82
RFX3P48380 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.59□□□□□ -2.82
RFX3P48380 SNORD113-4-201ENST00000364802 75 ntBASIC-2.59□□□□□ -2.82
RFX3P48380 AC139453.2-201ENST00000487255 133 ntBASIC-2.59□□□□□ -2.82
RFX3P48380 AL731768.1-201ENST00000603124 139 ntBASIC-2.61□□□□□ -2.83
RFX3P48380 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-2.61□□□□□ -2.83
RFX3P48380 RNU6-471P-201ENST00000383944 106 ntBASIC-2.62□□□□□ -2.83
RFX3P48380 MIR4317-201ENST00000637586 65 ntBASIC-2.63□□□□□ -2.83
RFX3P48380 RNU6-1255P-201ENST00000363434 112 ntBASIC-2.64□□□□□ -2.83
RFX3P48380 MIR548H4-201ENST00000408689 111 ntBASIC-2.64□□□□□ -2.83
RFX3P48380 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.65□□□□□ -2.83
RFX3P48380 MIR4662A-201ENST00000637499 67 ntBASIC-2.65□□□□□ -2.83
RFX3P48380 SNORD115.2-201ENST00000391126 59 ntBASIC-2.66□□□□□ -2.84
RFX3P48380 AC114801.3-201ENST00000510231 177 ntBASIC-2.66□□□□□ -2.84
RFX3P48380 Y_RNA.206-201ENST00000364136 102 ntBASIC-2.67□□□□□ -2.84
RFX3P48380 Y_RNA.260-201ENST00000364628 101 ntBASIC-2.68□□□□□ -2.84
RFX3P48380 RNA5SP224-201ENST00000365069 126 ntBASIC-2.68□□□□□ -2.84
RFX3P48380 MIR633-201ENST00000384821 98 ntBASIC-2.68□□□□□ -2.84
RFX3P48380 Y_RNA.134-201ENST00000363435 105 ntBASIC-2.69□□□□□ -2.84
RFX3P48380 RNU4-33P-201ENST00000364316 85 ntBASIC-2.69□□□□□ -2.84
RFX3P48380 RNU6-1008P-201ENST00000384160 104 ntBASIC-2.69□□□□□ -2.84
RFX3P48380 MIR5693-201ENST00000577722 73 ntBASIC-2.69□□□□□ -2.84
RFX3P48380 MIR548AL-201ENST00000578416 97 ntBASIC-2.7□□□□□ -2.84
RFX3P48380 RNU6-829P-201ENST00000363700 112 ntBASIC-2.71□□□□□ -2.84
RFX3P48380 RNY4P25-201ENST00000459254 96 ntBASIC-2.71□□□□□ -2.84
RFX3P48380 RNU6-737P-201ENST00000365370 107 ntBASIC-2.72□□□□□ -2.84
RFX3P48380 SNORD45C-201ENST00000383893 79 ntBASIC-2.72□□□□□ -2.84
RFX3P48380 MIR656-201ENST00000385224 78 ntBASIC-2.73□□□□□ -2.85
RFX3P48380 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.75□□□□□ -2.85
RFX3P48380 RNU6-836P-201ENST00000362920 107 ntBASIC-2.76□□□□□ -2.85
RFX3P48380 RNU6-1326P-201ENST00000391262 107 ntBASIC-2.76□□□□□ -2.85
RFX3P48380 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.77□□□□□ -2.85
RFX3P48380 RNU6-854P-201ENST00000364036 107 ntBASIC-2.77□□□□□ -2.85
RFX3P48380 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.77□□□□□ -2.85
RFX3P48380 MIR1302-4-201ENST00000408701 150 ntBASIC-2.78□□□□□ -2.85
RFX3P48380 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.79□□□□□ -2.86
RFX3P48380 RNU6-803P-201ENST00000516034 102 ntBASIC-2.79□□□□□ -2.86
RFX3P48380 Y_RNA.345-201ENST00000365384 92 ntBASIC-2.8□□□□□ -2.86
RFX3P48380 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.81□□□□□ -2.86
RFX3P48380 RNU6-1204P-201ENST00000363948 107 ntBASIC-2.82□□□□□ -2.86
RFX3P48380 AL359920.1-201ENST00000618332 176 ntBASIC-2.82□□□□□ -2.86
RFX3P48380 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.83□□□□□ -2.86
RFX3P48380 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.83□□□□□ -2.86
RFX3P48380 Y_RNA.379-201ENST00000365653 102 ntBASIC-2.84□□□□□ -2.86
RFX3P48380 RNU6-808P-201ENST00000391233 108 ntBASIC-2.84□□□□□ -2.86
RFX3P48380 Y_RNA.685-201ENST00000516532 108 ntBASIC-2.84□□□□□ -2.86
RFX3P48380 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.85□□□□□ -2.87
RFX3P48380 Y_RNA.335-201ENST00000365299 96 ntBASIC-2.86□□□□□ -2.87
RFX3P48380 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.86□□□□□ -2.87
RFX3P48380 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.86□□□□□ -2.87
RFX3P48380 AC079150.2-201ENST00000443733 78 ntBASIC-2.88□□□□□ -2.87
RFX3P48380 RNU6-1275P-201ENST00000391087 107 ntBASIC-2.89□□□□□ -2.87
RFX3P48380 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.9□□□□□ -2.87
RFX3P48380 RNU6-986P-201ENST00000363133 102 ntBASIC-2.92□□□□□ -2.88
RFX3P48380 RNU6-838P-201ENST00000363399 108 ntBASIC-2.92□□□□□ -2.88
RFX3P48380 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.92□□□□□ -2.88
RFX3P48380 RNU6-788P-201ENST00000390967 104 ntBASIC-2.92□□□□□ -2.88
RFX3P48380 SNORD115-45-201ENST00000391078 81 ntBASIC-2.92□□□□□ -2.88
RFX3P48380 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.93□□□□□ -2.88
RFX3P48380 MIR545-201ENST00000385085 106 ntBASIC-2.94□□□□□ -2.88
RFX3P48380 MIR124-1-201ENST00000385275 85 ntBASIC-2.94□□□□□ -2.88
RFX3P48380 RNU6-1161P-201ENST00000516176 102 ntBASIC-2.94□□□□□ -2.88
RFX3P48380 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-2.95□□□□□ -2.88
RFX3P48380 AC125388.1-201ENST00000459631 156 ntBASIC-2.98□□□□□ -2.89
RFX3P48380 RNU6-59P-201ENST00000384787 107 ntBASIC-2.99□□□□□ -2.89
RFX3P48380 SNORD114-13-201ENST00000364377 74 ntBASIC-3□□□□□ -2.89
RFX3P48380 MIR548AH-201ENST00000637109 76 ntBASIC-3□□□□□ -2.89
RFX3P48380 RNU6-753P-201ENST00000363926 107 ntBASIC-3.01□□□□□ -2.89
RFX3P48380 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.01□□□□□ -2.89
RFX3P48380 RNU6-936P-201ENST00000384005 107 ntBASIC-3.04□□□□□ -2.9
RFX3P48380 Y_RNA.137-201ENST00000363455 112 ntBASIC-3.06□□□□□ -2.9
RFX3P48380 MIR509-1-201ENST00000385265 94 ntBASIC-3.06□□□□□ -2.9
RFX3P48380 MIR509-2-201ENST00000390724 91 ntBASIC-3.06□□□□□ -2.9
RFX3P48380 RNU6-422P-201ENST00000384632 107 ntBASIC-3.08□□□□□ -2.9
RFX3P48380 RNU6-499P-201ENST00000365615 107 ntBASIC-3.09□□□□□ -2.9
RFX3P48380 RNU6-987P-201ENST00000384759 104 ntBASIC-3.1□□□□□ -2.91
RFX3P48380 RNU6-930P-201ENST00000390938 100 ntBASIC-3.11□□□□□ -2.91
RFX3P48380 MIR548F3-201ENST00000408509 87 ntBASIC-3.11□□□□□ -2.91
RFX3P48380 RNA5SP106-201ENST00000517274 100 ntBASIC-3.11□□□□□ -2.91
RFX3P48380 RNY4P10-201ENST00000365571 96 ntBASIC-3.19□□□□□ -2.92
RFX3P48380 RNU6-638P-201ENST00000516582 104 ntBASIC-3.19□□□□□ -2.92
RFX3P48380 Y_RNA.657-201ENST00000515983 102 ntBASIC-3.2□□□□□ -2.92
RFX3P48380 Y_RNA.406-201ENST00000383984 100 ntBASIC-3.24□□□□□ -2.93
RFX3P48380 RNU6-1043P-201ENST00000410355 99 ntBASIC-3.24□□□□□ -2.93
RFX3P48380 RNU6-614P-201ENST00000384369 107 ntBASIC-3.29□□□□□ -2.94
RFX3P48380 U6.59-201ENST00000615686 107 ntBASIC-3.29□□□□□ -2.94
RFX3P48380 DLEU2_4.2-201ENST00000616613 58 ntBASIC-3.33□□□□□ -2.94
RFX3P48380 SNORA72.7-201ENST00000516349 94 ntBASIC-3.34□□□□□ -2.94
RFX3P48380 RNU6-665P-201ENST00000384639 107 ntBASIC-3.41□□□□□ -2.96
RFX3P48380 SNORD111B-201ENST00000408587 80 ntBASIC-3.44□□□□□ -2.96
RFX3P48380 RNU6-1024P-201ENST00000384199 107 ntBASIC-3.46□□□□□ -2.96
Retrieved 100 of 98,524 protein–RNA pairs in 266.4 ms