Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 Y_RNA.795-201ENST00000619475 112 ntBASIC-0.93□□□□□ -2.56
SHANK1Q9Y566 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.93□□□□□ -2.56
SHANK1Q9Y566 Y_RNA.827-201ENST00000638104 112 ntBASIC-0.93□□□□□ -2.56
SHANK1Q9Y566 RNU6-895P-201ENST00000384125 103 ntBASIC-0.94□□□□□ -2.56
SHANK1Q9Y566 RNY3P8-201ENST00000411366 126 ntBASIC-0.94□□□□□ -2.56
SHANK1Q9Y566 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.94□□□□□ -2.56
SHANK1Q9Y566 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.94□□□□□ -2.56
SHANK1Q9Y566 MIR4426-201ENST00000640330 63 ntBASIC-0.94□□□□□ -2.56
SHANK1Q9Y566 RNU6-1306P-201ENST00000365219 99 ntBASIC-0.94□□□□□ -2.56
SHANK1Q9Y566 RNU6-974P-201ENST00000384099 108 ntBASIC-0.94□□□□□ -2.56
SHANK1Q9Y566 RNU6-361P-201ENST00000364454 107 ntBASIC-0.95□□□□□ -2.56
SHANK1Q9Y566 RNU6-669P-201ENST00000365575 107 ntBASIC-0.95□□□□□ -2.56
SHANK1Q9Y566 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.96□□□□□ -2.56
SHANK1Q9Y566 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.96□□□□□ -2.56
SHANK1Q9Y566 RNU6-1169P-201ENST00000363537 103 ntBASIC-0.97□□□□□ -2.56
SHANK1Q9Y566 MIR579-201ENST00000385221 98 ntBASIC-0.97□□□□□ -2.56
SHANK1Q9Y566 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.97□□□□□ -2.56
SHANK1Q9Y566 RNU6-1121P-201ENST00000516802 109 ntBASIC-0.97□□□□□ -2.56
SHANK1Q9Y566 Y_RNA.59-201ENST00000362828 102 ntBASIC-0.97□□□□□ -2.57
SHANK1Q9Y566 Y_RNA.225-201ENST00000364326 97 ntBASIC-0.97□□□□□ -2.57
SHANK1Q9Y566 RNU6-411P-201ENST00000384451 107 ntBASIC-0.97□□□□□ -2.57
SHANK1Q9Y566 MIR1302-4-201ENST00000408701 150 ntBASIC-0.97□□□□□ -2.57
SHANK1Q9Y566 RNU6-1191P-201ENST00000516799 107 ntBASIC-0.97□□□□□ -2.57
SHANK1Q9Y566 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.97□□□□□ -2.57
SHANK1Q9Y566 MIR7978-201ENST00000636158 59 ntBASIC-0.97□□□□□ -2.57
SHANK1Q9Y566 RNU6-912P-201ENST00000363800 104 ntBASIC-0.98□□□□□ -2.57
SHANK1Q9Y566 RNU6-242P-201ENST00000384359 107 ntBASIC-0.98□□□□□ -2.57
SHANK1Q9Y566 SNORA26.2-201ENST00000390922 122 ntBASIC-0.98□□□□□ -2.57
SHANK1Q9Y566 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.98□□□□□ -2.57
SHANK1Q9Y566 SNORA25.5-201ENST00000363782 126 ntBASIC-0.98□□□□□ -2.57
SHANK1Q9Y566 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.99□□□□□ -2.57
SHANK1Q9Y566 Y_RNA.260-201ENST00000364628 101 ntBASIC-0.99□□□□□ -2.57
SHANK1Q9Y566 Y_RNA.501-201ENST00000384467 103 ntBASIC-0.99□□□□□ -2.57
SHANK1Q9Y566 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.99□□□□□ -2.57
SHANK1Q9Y566 RNU7-160P-201ENST00000516660 62 ntBASIC-0.99□□□□□ -2.57
SHANK1Q9Y566 Y_RNA.511-201ENST00000384514 103 ntBASIC-1□□□□□ -2.57
SHANK1Q9Y566 SNORD116.2-201ENST00000391251 93 ntBASIC-1□□□□□ -2.57
SHANK1Q9Y566 RNU6-345P-201ENST00000517001 107 ntBASIC-1□□□□□ -2.57
SHANK1Q9Y566 SNORA40.16-201ENST00000517238 121 ntBASIC-1□□□□□ -2.57
SHANK1Q9Y566 MIR4679-1-201ENST00000637619 75 ntBASIC-1□□□□□ -2.57
SHANK1Q9Y566 RNU6-1296P-201ENST00000383879 107 ntBASIC-1□□□□□ -2.57
SHANK1Q9Y566 Y_RNA.397-201ENST00000383950 98 ntBASIC-1□□□□□ -2.57
SHANK1Q9Y566 RNU6-803P-201ENST00000516034 102 ntBASIC-1□□□□□ -2.57
SHANK1Q9Y566 SNORA25.4-201ENST00000363666 124 ntBASIC-1.01□□□□□ -2.57
SHANK1Q9Y566 RNU6-634P-201ENST00000459134 106 ntBASIC-1.01□□□□□ -2.57
SHANK1Q9Y566 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.01□□□□□ -2.57
SHANK1Q9Y566 U7.4-201ENST00000614961 63 ntBASIC-1.01□□□□□ -2.57
SHANK1Q9Y566 AC013734.1-201ENST00000619329 111 ntBASIC-1.01□□□□□ -2.57
SHANK1Q9Y566 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.02□□□□□ -2.57
SHANK1Q9Y566 MIR202-201ENST00000362219 110 ntBASIC-1.02□□□□□ -2.57
SHANK1Q9Y566 RNU6-598P-201ENST00000364017 105 ntBASIC-1.02□□□□□ -2.57
SHANK1Q9Y566 SNORA40B-201ENST00000385573 128 ntBASIC-1.02□□□□□ -2.57
SHANK1Q9Y566 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.02□□□□□ -2.57
SHANK1Q9Y566 RNU6-987P-201ENST00000384759 104 ntBASIC-1.03□□□□□ -2.57
SHANK1Q9Y566 MIR494-201ENST00000349529 81 ntBASIC-1.03□□□□□ -2.57
SHANK1Q9Y566 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.03□□□□□ -2.57
SHANK1Q9Y566 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.03□□□□□ -2.57
SHANK1Q9Y566 RNU6-530P-201ENST00000391180 107 ntBASIC-1.03□□□□□ -2.57
SHANK1Q9Y566 MIR7110-201ENST00000612638 86 ntBASIC-1.03□□□□□ -2.57
SHANK1Q9Y566 RNU6-590P-201ENST00000365039 107 ntBASIC-1.04□□□□□ -2.58
SHANK1Q9Y566 RNA5SP224-201ENST00000365069 126 ntBASIC-1.04□□□□□ -2.58
SHANK1Q9Y566 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.04□□□□□ -2.58
SHANK1Q9Y566 RNU6-172P-201ENST00000411000 93 ntBASIC-1.04□□□□□ -2.58
SHANK1Q9Y566 RNU6-230P-201ENST00000362457 104 ntBASIC-1.05□□□□□ -2.58
SHANK1Q9Y566 SNORA27.2-201ENST00000363365 126 ntBASIC-1.05□□□□□ -2.58
SHANK1Q9Y566 SNORD116-24-201ENST00000384549 92 ntBASIC-1.05□□□□□ -2.58
SHANK1Q9Y566 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.05□□□□□ -2.58
SHANK1Q9Y566 SNORD78.1-201ENST00000390866 65 ntBASIC-1.06□□□□□ -2.58
SHANK1Q9Y566 MIR548H4-201ENST00000408689 111 ntBASIC-1.06□□□□□ -2.58
SHANK1Q9Y566 RNY4P29-201ENST00000410801 97 ntBASIC-1.06□□□□□ -2.58
SHANK1Q9Y566 RNU6-871P-201ENST00000516122 100 ntBASIC-1.06□□□□□ -2.58
SHANK1Q9Y566 RNU6-539P-201ENST00000516665 103 ntBASIC-1.06□□□□□ -2.58
SHANK1Q9Y566 RNU6-300P-201ENST00000459080 104 ntBASIC-1.07□□□□□ -2.58
SHANK1Q9Y566 RNY4P25-201ENST00000459254 96 ntBASIC-1.07□□□□□ -2.58
SHANK1Q9Y566 RNU6-687P-201ENST00000516443 89 ntBASIC-1.07□□□□□ -2.58
SHANK1Q9Y566 RNU6-520P-201ENST00000384717 104 ntBASIC-1.07□□□□□ -2.58
SHANK1Q9Y566 RNU6-800P-201ENST00000384473 103 ntBASIC-1.08□□□□□ -2.58
SHANK1Q9Y566 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.08□□□□□ -2.58
SHANK1Q9Y566 SNORD60-201ENST00000383903 83 ntBASIC-1.08□□□□□ -2.58
SHANK1Q9Y566 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.08□□□□□ -2.58
SHANK1Q9Y566 RNU6-857P-201ENST00000515893 110 ntBASIC-1.08□□□□□ -2.58
SHANK1Q9Y566 RNA5SP170-201ENST00000517150 101 ntBASIC-1.08□□□□□ -2.58
SHANK1Q9Y566 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.08□□□□□ -2.58
SHANK1Q9Y566 SNORD73B-201ENST00000364394 72 ntBASIC-1.09□□□□□ -2.58
SHANK1Q9Y566 MIR5693-201ENST00000577722 73 ntBASIC-1.09□□□□□ -2.58
SHANK1Q9Y566 MIR4511-201ENST00000582784 87 ntBASIC-1.09□□□□□ -2.58
SHANK1Q9Y566 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.1□□□□□ -2.58
SHANK1Q9Y566 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.1□□□□□ -2.58
SHANK1Q9Y566 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.1□□□□□ -2.58
SHANK1Q9Y566 RNU7-119P-201ENST00000459279 63 ntBASIC-1.1□□□□□ -2.58
SHANK1Q9Y566 MIR3134-201ENST00000579433 74 ntBASIC-1.1□□□□□ -2.58
SHANK1Q9Y566 RNU6-828P-201ENST00000364876 107 ntBASIC-1.1□□□□□ -2.59
SHANK1Q9Y566 SNORA17.4-201ENST00000391287 132 ntBASIC-1.1□□□□□ -2.59
SHANK1Q9Y566 MIR3938-201ENST00000582157 103 ntBASIC-1.11□□□□□ -2.59
SHANK1Q9Y566 RNU6-822P-201ENST00000362707 106 ntBASIC-1.11□□□□□ -2.59
SHANK1Q9Y566 RNU6-176P-201ENST00000517196 105 ntBASIC-1.11□□□□□ -2.59
SHANK1Q9Y566 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.13□□□□□ -2.59
SHANK1Q9Y566 AL731768.1-201ENST00000603124 139 ntBASIC-1.13□□□□□ -2.59
SHANK1Q9Y566 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.13□□□□□ -2.59
SHANK1Q9Y566 RNU6-810P-201ENST00000364001 107 ntBASIC-1.13□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms