Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-530P-201ENST00000391180 107 ntBASIC-2.74□□□□□ -2.85
SCN3AQ9NY46 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-2.74□□□□□ -2.85
SCN3AQ9NY46 AL731768.1-201ENST00000603124 139 ntBASIC-2.74□□□□□ -2.85
SCN3AQ9NY46 RNU7-171P-201ENST00000459581 62 ntBASIC-2.75□□□□□ -2.85
SCN3AQ9NY46 RNU7-119P-201ENST00000459279 63 ntBASIC-2.76□□□□□ -2.85
SCN3AQ9NY46 Y_RNA.69-201ENST00000362885 109 ntBASIC-2.77□□□□□ -2.85
SCN3AQ9NY46 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.77□□□□□ -2.85
SCN3AQ9NY46 RNU6-895P-201ENST00000384125 103 ntBASIC-2.77□□□□□ -2.85
SCN3AQ9NY46 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.78□□□□□ -2.85
SCN3AQ9NY46 RNU6-663P-201ENST00000391105 106 ntBASIC-2.79□□□□□ -2.86
SCN3AQ9NY46 TMSB4XP3-201ENST00000445144 114 ntBASIC-2.79□□□□□ -2.86
SCN3AQ9NY46 Y_RNA.703-201ENST00000516846 111 ntBASIC-2.8□□□□□ -2.86
SCN3AQ9NY46 RNU6-231P-201ENST00000517122 103 ntBASIC-2.8□□□□□ -2.86
SCN3AQ9NY46 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.8□□□□□ -2.86
SCN3AQ9NY46 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.8□□□□□ -2.86
SCN3AQ9NY46 RNU6-1131P-201ENST00000364955 107 ntBASIC-2.8□□□□□ -2.86
SCN3AQ9NY46 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.8□□□□□ -2.86
SCN3AQ9NY46 Y_RNA.73-201ENST00000362910 113 ntBASIC-2.81□□□□□ -2.86
SCN3AQ9NY46 RNU6-22P-201ENST00000384355 107 ntBASIC-2.81□□□□□ -2.86
SCN3AQ9NY46 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.82□□□□□ -2.86
SCN3AQ9NY46 MIR1245B-201ENST00000636115 69 ntBASIC-2.82□□□□□ -2.86
SCN3AQ9NY46 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.83□□□□□ -2.86
SCN3AQ9NY46 SNORD114-13-201ENST00000364377 74 ntBASIC-2.84□□□□□ -2.86
SCN3AQ9NY46 RNU6-1011P-201ENST00000384668 107 ntBASIC-2.84□□□□□ -2.86
SCN3AQ9NY46 MIR3938-201ENST00000582157 103 ntBASIC-2.85□□□□□ -2.87
SCN3AQ9NY46 RNU6-800P-201ENST00000384473 103 ntBASIC-2.86□□□□□ -2.87
SCN3AQ9NY46 AL451105.1-201ENST00000450005 189 ntBASIC-2.86□□□□□ -2.87
SCN3AQ9NY46 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.86□□□□□ -2.87
SCN3AQ9NY46 MIR5588-201ENST00000581890 63 ntBASIC-2.86□□□□□ -2.87
SCN3AQ9NY46 MIR4712-201ENST00000583750 82 ntBASIC-2.86□□□□□ -2.87
SCN3AQ9NY46 Y_RNA.788-201ENST00000622394 112 ntBASIC-2.86□□□□□ -2.87
SCN3AQ9NY46 MIR1254-1-201ENST00000408257 97 ntBASIC-2.87□□□□□ -2.87
SCN3AQ9NY46 Y_RNA.593-201ENST00000410292 98 ntBASIC-2.87□□□□□ -2.87
SCN3AQ9NY46 SNORA25.4-201ENST00000363666 124 ntBASIC-2.88□□□□□ -2.87
SCN3AQ9NY46 RNU6-640P-201ENST00000363693 105 ntBASIC-2.89□□□□□ -2.87
SCN3AQ9NY46 RNU6-1134P-201ENST00000365156 101 ntBASIC-2.9□□□□□ -2.87
SCN3AQ9NY46 RNU6-209P-201ENST00000384118 107 ntBASIC-2.9□□□□□ -2.87
SCN3AQ9NY46 RNU6-822P-201ENST00000362707 106 ntBASIC-2.91□□□□□ -2.88
SCN3AQ9NY46 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.92□□□□□ -2.88
SCN3AQ9NY46 Y_RNA.520-201ENST00000384556 102 ntBASIC-2.92□□□□□ -2.88
SCN3AQ9NY46 MIR488-201ENST00000365739 83 ntBASIC-2.93□□□□□ -2.88
SCN3AQ9NY46 Y_RNA.94-201ENST00000363068 106 ntBASIC-2.93□□□□□ -2.88
SCN3AQ9NY46 Y_RNA.316-201ENST00000365118 111 ntBASIC-2.93□□□□□ -2.88
SCN3AQ9NY46 RNU6-1154P-201ENST00000391001 104 ntBASIC-2.93□□□□□ -2.88
SCN3AQ9NY46 AL365222.1-201ENST00000614661 98 ntBASIC-2.94□□□□□ -2.88
SCN3AQ9NY46 RNU6-411P-201ENST00000384451 107 ntBASIC-2.95□□□□□ -2.88
SCN3AQ9NY46 RNU6-419P-201ENST00000517030 63 ntBASIC-2.95□□□□□ -2.88
SCN3AQ9NY46 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.95□□□□□ -2.88
SCN3AQ9NY46 RNU6-742P-201ENST00000365289 107 ntBASIC-2.95□□□□□ -2.88
SCN3AQ9NY46 MIR4317-201ENST00000637586 65 ntBASIC-2.95□□□□□ -2.88
SCN3AQ9NY46 RNU6-794P-201ENST00000517261 64 ntBASIC-2.96□□□□□ -2.88
SCN3AQ9NY46 MIR4666B-201ENST00000578142 81 ntBASIC-2.96□□□□□ -2.88
SCN3AQ9NY46 MIR4719-201ENST00000585233 84 ntBASIC-2.96□□□□□ -2.88
SCN3AQ9NY46 Y_RNA.261-201ENST00000364631 102 ntBASIC-2.97□□□□□ -2.88
SCN3AQ9NY46 RNU6-32P-201ENST00000383948 107 ntBASIC-2.97□□□□□ -2.88
SCN3AQ9NY46 RNU6-13P-201ENST00000384248 107 ntBASIC-2.97□□□□□ -2.88
SCN3AQ9NY46 RNU6-1117P-201ENST00000384525 104 ntBASIC-2.97□□□□□ -2.88
SCN3AQ9NY46 RNU6-12P-201ENST00000384604 107 ntBASIC-2.97□□□□□ -2.88
SCN3AQ9NY46 RNU6-41P-201ENST00000384741 107 ntBASIC-2.97□□□□□ -2.88
SCN3AQ9NY46 RNY4P30-201ENST00000410216 95 ntBASIC-2.97□□□□□ -2.88
SCN3AQ9NY46 RNU6-634P-201ENST00000459134 106 ntBASIC-2.97□□□□□ -2.88
SCN3AQ9NY46 RNU6-687P-201ENST00000516443 89 ntBASIC-2.97□□□□□ -2.89
SCN3AQ9NY46 MIR4511-201ENST00000582784 87 ntBASIC-2.97□□□□□ -2.89
SCN3AQ9NY46 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.98□□□□□ -2.89
SCN3AQ9NY46 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.98□□□□□ -2.89
SCN3AQ9NY46 MIR3134-201ENST00000579433 74 ntBASIC-2.98□□□□□ -2.89
SCN3AQ9NY46 MIR548X-201ENST00000580069 75 ntBASIC-2.98□□□□□ -2.89
SCN3AQ9NY46 Y_RNA.206-201ENST00000364136 102 ntBASIC-2.98□□□□□ -2.89
SCN3AQ9NY46 AL359920.1-201ENST00000618332 176 ntBASIC-2.98□□□□□ -2.89
SCN3AQ9NY46 RNA5SP224-201ENST00000365069 126 ntBASIC-2.99□□□□□ -2.89
SCN3AQ9NY46 IGLL4P-201ENST00000614590 133 ntBASIC-2.99□□□□□ -2.89
SCN3AQ9NY46 MIR450A2-201ENST00000385022 100 ntBASIC-3□□□□□ -2.89
SCN3AQ9NY46 U7.4-201ENST00000614961 63 ntBASIC-3□□□□□ -2.89
SCN3AQ9NY46 MIR4679-1-201ENST00000637619 75 ntBASIC-3□□□□□ -2.89
SCN3AQ9NY46 RNU6-1276P-201ENST00000365372 104 ntBASIC-3.02□□□□□ -2.89
SCN3AQ9NY46 Y_RNA.382-201ENST00000365672 114 ntBASIC-3.02□□□□□ -2.89
SCN3AQ9NY46 AC062037.1-201ENST00000605302 128 ntBASIC-3.02□□□□□ -2.89
SCN3AQ9NY46 RNU6-147P-201ENST00000383983 107 ntBASIC-3.03□□□□□ -2.89
SCN3AQ9NY46 RNU6-49P-201ENST00000384256 107 ntBASIC-3.03□□□□□ -2.89
SCN3AQ9NY46 MIR3133-201ENST00000583157 78 ntBASIC-3.03□□□□□ -2.89
SCN3AQ9NY46 Y_RNA.43-201ENST00000362670 111 ntBASIC-3.05□□□□□ -2.9
SCN3AQ9NY46 RNU6-81P-201ENST00000365608 104 ntBASIC-3.05□□□□□ -2.9
SCN3AQ9NY46 RNU6-787P-201ENST00000384032 107 ntBASIC-3.06□□□□□ -2.9
SCN3AQ9NY46 MIR548M-201ENST00000408260 86 ntBASIC-3.08□□□□□ -2.9
SCN3AQ9NY46 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-3.09□□□□□ -2.9
SCN3AQ9NY46 SNORD115-45-201ENST00000391078 81 ntBASIC-3.1□□□□□ -2.91
SCN3AQ9NY46 RNU6-122P-201ENST00000516818 107 ntBASIC-3.1□□□□□ -2.91
SCN3AQ9NY46 MIR548H4-201ENST00000408689 111 ntBASIC-3.1□□□□□ -2.91
SCN3AQ9NY46 RNA5SP89-201ENST00000410300 108 ntBASIC-3.1□□□□□ -2.91
SCN3AQ9NY46 AC090425.1-201ENST00000610007 140 ntBASIC-3.1□□□□□ -2.91
SCN3AQ9NY46 RNU6-919P-201ENST00000516731 104 ntBASIC-3.12□□□□□ -2.91
SCN3AQ9NY46 RNU6-1128P-201ENST00000362825 109 ntBASIC-3.12□□□□□ -2.91
SCN3AQ9NY46 RNU6-665P-201ENST00000384639 107 ntBASIC-3.12□□□□□ -2.91
SCN3AQ9NY46 AC103706.3-201ENST00000636297 85 ntBASIC-3.12□□□□□ -2.91
SCN3AQ9NY46 RNU6-539P-201ENST00000516665 103 ntBASIC-3.13□□□□□ -2.91
SCN3AQ9NY46 AC110620.1-201ENST00000416042 228 ntBASIC-3.14□□□□□ -2.91
SCN3AQ9NY46 MIR548AL-201ENST00000578416 97 ntBASIC-3.15□□□□□ -2.91
SCN3AQ9NY46 RNU6-737P-201ENST00000365370 107 ntBASIC-3.16□□□□□ -2.92
SCN3AQ9NY46 SNORD45C-201ENST00000383893 79 ntBASIC-3.16□□□□□ -2.92
SCN3AQ9NY46 Y_RNA.545-201ENST00000384652 105 ntBASIC-3.16□□□□□ -2.92
Retrieved 100 of 98,524 protein–RNA pairs in 174.4 ms