Protein–RNA interactions for Protein: Q8NE63

HIPK4, Homeodomain-interacting protein kinase 4, humanhuman

Predictions only

Length 616 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK4Q8NE63 SNORD60-201ENST00000383903 83 ntBASIC-1.22□□□□□ -2.6
HIPK4Q8NE63 MIR6874-201ENST00000635894 71 ntBASIC-1.22□□□□□ -2.6
HIPK4Q8NE63 MIR409-201ENST00000362237 79 ntBASIC-1.23□□□□□ -2.61
HIPK4Q8NE63 RNU6-141P-201ENST00000410499 105 ntBASIC-1.23□□□□□ -2.61
HIPK4Q8NE63 HAR1A.1-201ENST00000459583 118 ntBASIC-1.23□□□□□ -2.61
HIPK4Q8NE63 RNU6-838P-201ENST00000363399 108 ntBASIC-1.24□□□□□ -2.61
HIPK4Q8NE63 HLA-S-202ENST00000425174 53 ntBASIC-1.24□□□□□ -2.61
HIPK4Q8NE63 MIR548AL-201ENST00000578416 97 ntBASIC-1.24□□□□□ -2.61
HIPK4Q8NE63 MIR548N-201ENST00000408742 75 ntBASIC-1.25□□□□□ -2.61
HIPK4Q8NE63 RNA5SP266-201ENST00000410273 108 ntBASIC-1.25□□□□□ -2.61
HIPK4Q8NE63 MIR5591-201ENST00000578248 65 ntBASIC-1.26□□□□□ -2.61
HIPK4Q8NE63 MIR4770-201ENST00000579149 58 ntBASIC-1.26□□□□□ -2.61
HIPK4Q8NE63 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.27□□□□□ -2.61
HIPK4Q8NE63 U6.97-201ENST00000636904 101 ntBASIC-1.27□□□□□ -2.61
HIPK4Q8NE63 RNU6-226P-201ENST00000363778 107 ntBASIC-1.29□□□□□ -2.62
HIPK4Q8NE63 RNU4-88P-201ENST00000411220 86 ntBASIC-1.29□□□□□ -2.62
HIPK4Q8NE63 RNU6-300P-201ENST00000459080 104 ntBASIC-1.29□□□□□ -2.62
HIPK4Q8NE63 MIR581-201ENST00000384895 96 ntBASIC-1.3□□□□□ -2.62
HIPK4Q8NE63 RNU6-930P-201ENST00000390938 100 ntBASIC-1.32□□□□□ -2.62
HIPK4Q8NE63 RNU6-400P-201ENST00000391173 106 ntBASIC-1.32□□□□□ -2.62
HIPK4Q8NE63 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.33□□□□□ -2.62
HIPK4Q8NE63 MIR8485-201ENST00000401372 91 ntBASIC-1.33□□□□□ -2.62
HIPK4Q8NE63 MIR1246-201ENST00000636535 73 ntBASIC-1.33□□□□□ -2.62
HIPK4Q8NE63 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.34□□□□□ -2.62
HIPK4Q8NE63 MIR548F3-201ENST00000408509 87 ntBASIC-1.34□□□□□ -2.62
HIPK4Q8NE63 RNU6-176P-201ENST00000517196 105 ntBASIC-1.34□□□□□ -2.62
HIPK4Q8NE63 MIR6502-201ENST00000617296 76 ntBASIC-1.34□□□□□ -2.62
HIPK4Q8NE63 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.35□□□□□ -2.63
HIPK4Q8NE63 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.35□□□□□ -2.63
HIPK4Q8NE63 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.35□□□□□ -2.63
HIPK4Q8NE63 SNORD18C-201ENST00000362704 69 ntBASIC-1.37□□□□□ -2.63
HIPK4Q8NE63 MIR1285-2-201ENST00000408311 88 ntBASIC-1.38□□□□□ -2.63
HIPK4Q8NE63 MIR198-201ENST00000637333 62 ntBASIC-1.38□□□□□ -2.63
HIPK4Q8NE63 MIR548H4-201ENST00000408689 111 ntBASIC-1.39□□□□□ -2.63
HIPK4Q8NE63 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.4□□□□□ -2.63
HIPK4Q8NE63 MIR601-201ENST00000385256 79 ntBASIC-1.4□□□□□ -2.63
HIPK4Q8NE63 MIR4441-201ENST00000582623 100 ntBASIC-1.41□□□□□ -2.64
HIPK4Q8NE63 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.42□□□□□ -2.64
HIPK4Q8NE63 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.42□□□□□ -2.64
HIPK4Q8NE63 RNA5SP86-201ENST00000390869 98 ntBASIC-1.43□□□□□ -2.64
HIPK4Q8NE63 SNX3P1X-201ENST00000414887 175 ntBASIC-1.43□□□□□ -2.64
HIPK4Q8NE63 RNU6-983P-201ENST00000516004 103 ntBASIC-1.43□□□□□ -2.64
HIPK4Q8NE63 MIR4520-1-201ENST00000582609 70 ntBASIC-1.43□□□□□ -2.64
HIPK4Q8NE63 MIR365A-201ENST00000362260 87 ntBASIC-1.44□□□□□ -2.64
HIPK4Q8NE63 RNU6-695P-201ENST00000391157 104 ntBASIC-1.45□□□□□ -2.64
HIPK4Q8NE63 RNU6-68P-201ENST00000516576 104 ntBASIC-1.45□□□□□ -2.64
HIPK4Q8NE63 MIR4317-201ENST00000637586 65 ntBASIC-1.46□□□□□ -2.64
HIPK4Q8NE63 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.47□□□□□ -2.64
HIPK4Q8NE63 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.47□□□□□ -2.64
HIPK4Q8NE63 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.48□□□□□ -2.65
HIPK4Q8NE63 RNU6-986P-201ENST00000363133 102 ntBASIC-1.49□□□□□ -2.65
HIPK4Q8NE63 U4.2-201ENST00000618561 85 ntBASIC-1.49□□□□□ -2.65
HIPK4Q8NE63 SNORD18.1-201ENST00000363807 70 ntBASIC-1.5□□□□□ -2.65
HIPK4Q8NE63 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.5□□□□□ -2.65
HIPK4Q8NE63 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.51□□□□□ -2.65
HIPK4Q8NE63 MIR379-201ENST00000362218 67 ntBASIC-1.52□□□□□ -2.65
HIPK4Q8NE63 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.52□□□□□ -2.65
HIPK4Q8NE63 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.52□□□□□ -2.65
HIPK4Q8NE63 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.52□□□□□ -2.65
HIPK4Q8NE63 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.52□□□□□ -2.65
HIPK4Q8NE63 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.52□□□□□ -2.65
HIPK4Q8NE63 MIR545-201ENST00000385085 106 ntBASIC-1.53□□□□□ -2.65
HIPK4Q8NE63 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.54□□□□□ -2.66
HIPK4Q8NE63 RNA5SP331-201ENST00000364986 107 ntBASIC-1.54□□□□□ -2.66
HIPK4Q8NE63 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.54□□□□□ -2.66
HIPK4Q8NE63 MIR3123-201ENST00000583417 75 ntBASIC-1.54□□□□□ -2.66
HIPK4Q8NE63 RNY4P27-201ENST00000363341 96 ntBASIC-1.55□□□□□ -2.66
HIPK4Q8NE63 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.55□□□□□ -2.66
HIPK4Q8NE63 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.55□□□□□ -2.66
HIPK4Q8NE63 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.56□□□□□ -2.66
HIPK4Q8NE63 MIR548H1-201ENST00000408610 102 ntBASIC-1.56□□□□□ -2.66
HIPK4Q8NE63 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.57□□□□□ -2.66
HIPK4Q8NE63 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.59□□□□□ -2.66
HIPK4Q8NE63 RNU6-822P-201ENST00000362707 106 ntBASIC-1.61□□□□□ -2.67
HIPK4Q8NE63 AC108019.1-201ENST00000512540 175 ntBASIC-1.61□□□□□ -2.67
HIPK4Q8NE63 SNORD114-3-201ENST00000364969 75 ntBASIC-1.62□□□□□ -2.67
HIPK4Q8NE63 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.63□□□□□ -2.67
HIPK4Q8NE63 MIR664B-201ENST00000626756 61 ntBASIC-1.63□□□□□ -2.67
HIPK4Q8NE63 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.64□□□□□ -2.67
HIPK4Q8NE63 MIR487B-201ENST00000385021 84 ntBASIC-1.64□□□□□ -2.67
HIPK4Q8NE63 AL627230.5-201ENST00000619807 58 ntBASIC-1.64□□□□□ -2.67
HIPK4Q8NE63 RNU6-59P-201ENST00000384787 107 ntBASIC-1.65□□□□□ -2.67
HIPK4Q8NE63 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.65□□□□□ -2.67
HIPK4Q8NE63 RNU6-912P-201ENST00000363800 104 ntBASIC-1.66□□□□□ -2.68
HIPK4Q8NE63 RNU6-841P-201ENST00000383872 107 ntBASIC-1.66□□□□□ -2.68
HIPK4Q8NE63 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.67□□□□□ -2.68
HIPK4Q8NE63 MIR4756-201ENST00000577874 78 ntBASIC-1.67□□□□□ -2.68
HIPK4Q8NE63 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.69□□□□□ -2.68
HIPK4Q8NE63 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.69□□□□□ -2.68
HIPK4Q8NE63 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.69□□□□□ -2.68
HIPK4Q8NE63 snoU13.10-201ENST00000459301 103 ntBASIC-1.71□□□□□ -2.68
HIPK4Q8NE63 MIR548W-201ENST00000581970 74 ntBASIC-1.71□□□□□ -2.68
HIPK4Q8NE63 MIR496-201ENST00000385226 102 ntBASIC-1.72□□□□□ -2.68
HIPK4Q8NE63 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.72□□□□□ -2.68
HIPK4Q8NE63 MIR548AM-201ENST00000584298 74 ntBASIC-1.73□□□□□ -2.69
HIPK4Q8NE63 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.73□□□□□ -2.69
HIPK4Q8NE63 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.74□□□□□ -2.69
HIPK4Q8NE63 RNU6-118P-201ENST00000516552 102 ntBASIC-1.74□□□□□ -2.69
HIPK4Q8NE63 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.75□□□□□ -2.69
HIPK4Q8NE63 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.75□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms