Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AP000770.2-201ENST00000623694 100 ntBASIC-3.09□□□□□ -2.9
USF3Q68DE3 RNU6-219P-201ENST00000364728 107 ntBASIC-3.1□□□□□ -2.91
USF3Q68DE3 RNU6-979P-201ENST00000383896 107 ntBASIC-3.1□□□□□ -2.91
USF3Q68DE3 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-3.1□□□□□ -2.91
USF3Q68DE3 Y_RNA.165-201ENST00000363721 102 ntBASIC-3.11□□□□□ -2.91
USF3Q68DE3 RNU6-109P-201ENST00000516364 107 ntBASIC-3.11□□□□□ -2.91
USF3Q68DE3 RNU6-184P-201ENST00000516514 107 ntBASIC-3.11□□□□□ -2.91
USF3Q68DE3 Y_RNA.720-201ENST00000517166 92 ntBASIC-3.11□□□□□ -2.91
USF3Q68DE3 Y_RNA.345-201ENST00000365384 92 ntBASIC-3.11□□□□□ -2.91
USF3Q68DE3 RNU6-675P-201ENST00000384236 104 ntBASIC-3.11□□□□□ -2.91
USF3Q68DE3 RNU6-916P-201ENST00000516088 109 ntBASIC-3.11□□□□□ -2.91
USF3Q68DE3 RNU6-411P-201ENST00000384451 107 ntBASIC-3.12□□□□□ -2.91
USF3Q68DE3 RNU6-1160P-201ENST00000384546 104 ntBASIC-3.12□□□□□ -2.91
USF3Q68DE3 RNU6-1008P-201ENST00000384160 104 ntBASIC-3.12□□□□□ -2.91
USF3Q68DE3 SNORA40.13-201ENST00000516379 120 ntBASIC-3.12□□□□□ -2.91
USF3Q68DE3 MIR1302-5-201ENST00000408164 150 ntBASIC-3.13□□□□□ -2.91
USF3Q68DE3 RNU6-257P-201ENST00000410238 98 ntBASIC-3.13□□□□□ -2.91
USF3Q68DE3 RNU6-663P-201ENST00000391105 106 ntBASIC-3.15□□□□□ -2.91
USF3Q68DE3 RNU6-804P-201ENST00000384286 107 ntBASIC-3.16□□□□□ -2.91
USF3Q68DE3 MTND5P41-201ENST00000517498 206 ntBASIC-3.16□□□□□ -2.91
USF3Q68DE3 AC026407.1-201ENST00000518369 204 ntBASIC-3.16□□□□□ -2.91
USF3Q68DE3 RNU6-379P-201ENST00000363813 104 ntBASIC-3.16□□□□□ -2.92
USF3Q68DE3 Y_RNA.460-201ENST00000384255 102 ntBASIC-3.17□□□□□ -2.92
USF3Q68DE3 Y_RNA.722-201ENST00000517279 114 ntBASIC-3.17□□□□□ -2.92
USF3Q68DE3 MIR3908-201ENST00000579798 126 ntBASIC-3.18□□□□□ -2.92
USF3Q68DE3 AL589823.1-201ENST00000429577 183 ntBASIC-3.2□□□□□ -2.92
USF3Q68DE3 MTATP8P1-201ENST00000467115 207 ntBASIC-3.2□□□□□ -2.92
USF3Q68DE3 AL117187.1-201ENST00000555482 181 ntBASIC-3.2□□□□□ -2.92
USF3Q68DE3 SNORA25.4-201ENST00000363666 124 ntBASIC-3.21□□□□□ -2.92
USF3Q68DE3 MTCYBP9-201ENST00000431021 303 ntBASIC-3.23□□□□□ -2.93
USF3Q68DE3 RNU6-959P-201ENST00000384671 107 ntBASIC-3.24□□□□□ -2.93
USF3Q68DE3 MALAT1.1-201ENST00000618249 95 ntBASIC-3.24□□□□□ -2.93
USF3Q68DE3 RNU7-200P-201ENST00000516105 62 ntBASIC-3.24□□□□□ -2.93
USF3Q68DE3 RNU6-844P-201ENST00000517175 102 ntBASIC-3.24□□□□□ -2.93
USF3Q68DE3 snoMBII-202.2-201ENST00000517263 86 ntBASIC-3.24□□□□□ -2.93
USF3Q68DE3 Y_RNA.788-201ENST00000622394 112 ntBASIC-3.24□□□□□ -2.93
USF3Q68DE3 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-3.24□□□□□ -2.93
USF3Q68DE3 Y_RNA.149-201ENST00000363558 117 ntBASIC-3.25□□□□□ -2.93
USF3Q68DE3 Y_RNA.489-201ENST00000384410 101 ntBASIC-3.25□□□□□ -2.93
USF3Q68DE3 RNU6-907P-201ENST00000390924 102 ntBASIC-3.25□□□□□ -2.93
USF3Q68DE3 AC090425.1-201ENST00000610007 140 ntBASIC-3.25□□□□□ -2.93
USF3Q68DE3 AC008737.2-201ENST00000599446 118 ntBASIC-3.25□□□□□ -2.93
USF3Q68DE3 RNU6-200P-201ENST00000364743 107 ntBASIC-3.26□□□□□ -2.93
USF3Q68DE3 RNU6-122P-201ENST00000516818 107 ntBASIC-3.27□□□□□ -2.93
USF3Q68DE3 MIR606-201ENST00000384851 96 ntBASIC-3.28□□□□□ -2.93
USF3Q68DE3 MIR1302-3-201ENST00000408128 138 ntBASIC-3.28□□□□□ -2.93
USF3Q68DE3 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-3.28□□□□□ -2.93
USF3Q68DE3 MTCYBP6-201ENST00000441810 138 ntBASIC-3.28□□□□□ -2.93
USF3Q68DE3 RNU4-33P-201ENST00000364316 85 ntBASIC-3.28□□□□□ -2.94
USF3Q68DE3 RNU6-1326P-201ENST00000391262 107 ntBASIC-3.28□□□□□ -2.94
USF3Q68DE3 RNU7-171P-201ENST00000459581 62 ntBASIC-3.29□□□□□ -2.94
USF3Q68DE3 Y_RNA.193-201ENST00000363979 102 ntBASIC-3.29□□□□□ -2.94
USF3Q68DE3 Y_RNA.379-201ENST00000365653 102 ntBASIC-3.29□□□□□ -2.94
USF3Q68DE3 AL031737.1-201ENST00000450125 223 ntBASIC-3.29□□□□□ -2.94
USF3Q68DE3 MIR4511-201ENST00000582784 87 ntBASIC-3.29□□□□□ -2.94
USF3Q68DE3 Y_RNA.535-201ENST00000384612 99 ntBASIC-3.31□□□□□ -2.94
USF3Q68DE3 RNU6-255P-201ENST00000516957 105 ntBASIC-3.31□□□□□ -2.94
USF3Q68DE3 Y_RNA.422-201ENST00000384054 114 ntBASIC-3.31□□□□□ -2.94
USF3Q68DE3 RNU6-687P-201ENST00000516443 89 ntBASIC-3.32□□□□□ -2.94
USF3Q68DE3 Y_RNA.73-201ENST00000362910 113 ntBASIC-3.32□□□□□ -2.94
USF3Q68DE3 MIR4712-201ENST00000583750 82 ntBASIC-3.32□□□□□ -2.94
USF3Q68DE3 RNU6-1204P-201ENST00000363948 107 ntBASIC-3.33□□□□□ -2.94
USF3Q68DE3 Y_RNA.506-201ENST00000384494 102 ntBASIC-3.33□□□□□ -2.94
USF3Q68DE3 RNU6-589P-201ENST00000516485 107 ntBASIC-3.33□□□□□ -2.94
USF3Q68DE3 MIR4679-1-201ENST00000637619 75 ntBASIC-3.34□□□□□ -2.94
USF3Q68DE3 MIR450A1-201ENST00000362262 91 ntBASIC-3.34□□□□□ -2.94
USF3Q68DE3 Y_RNA.702-201ENST00000516843 96 ntBASIC-3.34□□□□□ -2.94
USF3Q68DE3 MIR5588-201ENST00000581890 63 ntBASIC-3.34□□□□□ -2.94
USF3Q68DE3 RNU6-1312P-201ENST00000362425 108 ntBASIC-3.35□□□□□ -2.95
USF3Q68DE3 RNU6-627P-201ENST00000364032 102 ntBASIC-3.35□□□□□ -2.95
USF3Q68DE3 SNORD116-14-201ENST00000383894 92 ntBASIC-3.35□□□□□ -2.95
USF3Q68DE3 SNORD116-17-201ENST00000383929 92 ntBASIC-3.35□□□□□ -2.95
USF3Q68DE3 SNORD116-15-201ENST00000384445 92 ntBASIC-3.35□□□□□ -2.95
USF3Q68DE3 SNORD116-19-201ENST00000384729 92 ntBASIC-3.35□□□□□ -2.95
USF3Q68DE3 RNU6-634P-201ENST00000459134 106 ntBASIC-3.35□□□□□ -2.95
USF3Q68DE3 Y_RNA.94-201ENST00000363068 106 ntBASIC-3.35□□□□□ -2.95
USF3Q68DE3 MIR1245B-201ENST00000636115 69 ntBASIC-3.36□□□□□ -2.95
USF3Q68DE3 RNU6-1131P-201ENST00000364955 107 ntBASIC-3.37□□□□□ -2.95
USF3Q68DE3 MIR548S-201ENST00000581352 82 ntBASIC-3.37□□□□□ -2.95
USF3Q68DE3 RNU6-738P-201ENST00000384531 106 ntBASIC-3.38□□□□□ -2.95
USF3Q68DE3 MIR568-201ENST00000385036 95 ntBASIC-3.39□□□□□ -2.95
USF3Q68DE3 MIR3134-201ENST00000579433 74 ntBASIC-3.39□□□□□ -2.95
USF3Q68DE3 Y_RNA.316-201ENST00000365118 111 ntBASIC-3.4□□□□□ -2.95
USF3Q68DE3 RNU6-388P-201ENST00000517012 105 ntBASIC-3.4□□□□□ -2.95
USF3Q68DE3 RNU6-389P-201ENST00000517048 105 ntBASIC-3.4□□□□□ -2.95
USF3Q68DE3 RNU6-986P-201ENST00000363133 102 ntBASIC-3.4□□□□□ -2.95
USF3Q68DE3 Y_RNA.593-201ENST00000410292 98 ntBASIC-3.4□□□□□ -2.95
USF3Q68DE3 AC044792.1-201ENST00000593294 196 ntBASIC-3.41□□□□□ -2.96
USF3Q68DE3 SNORD113-1-201ENST00000365321 69 ntBASIC-3.43□□□□□ -2.96
USF3Q68DE3 MIR4666B-201ENST00000578142 81 ntBASIC-3.43□□□□□ -2.96
USF3Q68DE3 AC103706.3-201ENST00000636297 85 ntBASIC-3.43□□□□□ -2.96
USF3Q68DE3 MIR494-201ENST00000349529 81 ntBASIC-3.44□□□□□ -2.96
USF3Q68DE3 RNU6-1056P-201ENST00000383996 107 ntBASIC-3.46□□□□□ -2.96
USF3Q68DE3 AC110620.1-201ENST00000416042 228 ntBASIC-3.46□□□□□ -2.96
USF3Q68DE3 AL117351.2-201ENST00000513571 157 ntBASIC-3.46□□□□□ -2.96
USF3Q68DE3 Y_RNA.15-201ENST00000362420 102 ntBASIC-3.46□□□□□ -2.96
USF3Q68DE3 RNU6-59P-201ENST00000384787 107 ntBASIC-3.46□□□□□ -2.96
USF3Q68DE3 AC008267.6-201ENST00000441664 139 ntBASIC-3.47□□□□□ -2.96
USF3Q68DE3 RNU6-209P-201ENST00000384118 107 ntBASIC-3.47□□□□□ -2.97
USF3Q68DE3 RNU6-1212P-201ENST00000517023 104 ntBASIC-3.47□□□□□ -2.97
Retrieved 100 of 98,524 protein–RNA pairs in 7.6 ms