Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNU6-974P-201ENST00000384099 108 ntBASIC-1.48□□□□□ -2.65
PDLIM3Q53GG5 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.48□□□□□ -2.65
PDLIM3Q53GG5 MIR3123-201ENST00000583417 75 ntBASIC-1.48□□□□□ -2.65
PDLIM3Q53GG5 AC103706.3-201ENST00000636297 85 ntBASIC-1.48□□□□□ -2.65
PDLIM3Q53GG5 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.49□□□□□ -2.65
PDLIM3Q53GG5 RNU6-980P-201ENST00000516925 103 ntBASIC-1.49□□□□□ -2.65
PDLIM3Q53GG5 AC013734.1-201ENST00000619329 111 ntBASIC-1.49□□□□□ -2.65
PDLIM3Q53GG5 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.5□□□□□ -2.65
PDLIM3Q53GG5 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.5□□□□□ -2.65
PDLIM3Q53GG5 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.5□□□□□ -2.65
PDLIM3Q53GG5 RNU6-940P-201ENST00000363433 104 ntBASIC-1.51□□□□□ -2.65
PDLIM3Q53GG5 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.51□□□□□ -2.65
PDLIM3Q53GG5 AC108019.1-201ENST00000512540 175 ntBASIC-1.51□□□□□ -2.65
PDLIM3Q53GG5 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.52□□□□□ -2.65
PDLIM3Q53GG5 SNORA27.2-201ENST00000363365 126 ntBASIC-1.52□□□□□ -2.65
PDLIM3Q53GG5 RNU6-841P-201ENST00000383872 107 ntBASIC-1.52□□□□□ -2.65
PDLIM3Q53GG5 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.52□□□□□ -2.65
PDLIM3Q53GG5 MIR125B1-201ENST00000385236 88 ntBASIC-1.52□□□□□ -2.65
PDLIM3Q53GG5 SNORA72.7-201ENST00000516349 94 ntBASIC-1.52□□□□□ -2.65
PDLIM3Q53GG5 MIR466-201ENST00000580653 84 ntBASIC-1.52□□□□□ -2.65
PDLIM3Q53GG5 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.53□□□□□ -2.65
PDLIM3Q53GG5 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.53□□□□□ -2.65
PDLIM3Q53GG5 MIR548AM-201ENST00000584298 74 ntBASIC-1.53□□□□□ -2.65
PDLIM3Q53GG5 RNU7-160P-201ENST00000516660 62 ntBASIC-1.54□□□□□ -2.66
PDLIM3Q53GG5 RNY3P8-201ENST00000411366 126 ntBASIC-1.55□□□□□ -2.66
PDLIM3Q53GG5 RNU7-119P-201ENST00000459279 63 ntBASIC-1.55□□□□□ -2.66
PDLIM3Q53GG5 U6.97-201ENST00000636904 101 ntBASIC-1.55□□□□□ -2.66
PDLIM3Q53GG5 RNU6-828P-201ENST00000364876 107 ntBASIC-1.56□□□□□ -2.66
PDLIM3Q53GG5 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.56□□□□□ -2.66
PDLIM3Q53GG5 SNORA40B-201ENST00000385573 128 ntBASIC-1.56□□□□□ -2.66
PDLIM3Q53GG5 MIR4756-201ENST00000577874 78 ntBASIC-1.56□□□□□ -2.66
PDLIM3Q53GG5 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.58□□□□□ -2.66
PDLIM3Q53GG5 AC114801.3-201ENST00000510231 177 ntBASIC-1.59□□□□□ -2.66
PDLIM3Q53GG5 SNORA40.16-201ENST00000517238 121 ntBASIC-1.59□□□□□ -2.66
PDLIM3Q53GG5 MIR3938-201ENST00000582157 103 ntBASIC-1.59□□□□□ -2.66
PDLIM3Q53GG5 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.6□□□□□ -2.67
PDLIM3Q53GG5 RNU4-88P-201ENST00000411220 86 ntBASIC-1.61□□□□□ -2.67
PDLIM3Q53GG5 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.61□□□□□ -2.67
PDLIM3Q53GG5 RNU6-520P-201ENST00000384717 104 ntBASIC-1.62□□□□□ -2.67
PDLIM3Q53GG5 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.63□□□□□ -2.67
PDLIM3Q53GG5 AC110620.1-201ENST00000416042 228 ntBASIC-1.63□□□□□ -2.67
PDLIM3Q53GG5 MIR3139-201ENST00000579145 76 ntBASIC-1.63□□□□□ -2.67
PDLIM3Q53GG5 MIR548W-201ENST00000581970 74 ntBASIC-1.63□□□□□ -2.67
PDLIM3Q53GG5 MIR664B-201ENST00000626756 61 ntBASIC-1.63□□□□□ -2.67
PDLIM3Q53GG5 snoU13.10-201ENST00000459301 103 ntBASIC-1.64□□□□□ -2.67
PDLIM3Q53GG5 MIR581-201ENST00000384895 96 ntBASIC-1.65□□□□□ -2.67
PDLIM3Q53GG5 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.65□□□□□ -2.67
PDLIM3Q53GG5 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.65□□□□□ -2.67
PDLIM3Q53GG5 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.66□□□□□ -2.68
PDLIM3Q53GG5 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.66□□□□□ -2.68
PDLIM3Q53GG5 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.67□□□□□ -2.68
PDLIM3Q53GG5 MT-TM-201ENST00000387377 68 ntBASIC-1.67□□□□□ -2.68
PDLIM3Q53GG5 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.67□□□□□ -2.68
PDLIM3Q53GG5 MIR202-201ENST00000362219 110 ntBASIC-1.68□□□□□ -2.68
PDLIM3Q53GG5 SNORD18C-201ENST00000362704 69 ntBASIC-1.68□□□□□ -2.68
PDLIM3Q53GG5 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.68□□□□□ -2.68
PDLIM3Q53GG5 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.69□□□□□ -2.68
PDLIM3Q53GG5 RNU6-471P-201ENST00000383944 106 ntBASIC-1.69□□□□□ -2.68
PDLIM3Q53GG5 RNU6-530P-201ENST00000391180 107 ntBASIC-1.69□□□□□ -2.68
PDLIM3Q53GG5 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.69□□□□□ -2.68
PDLIM3Q53GG5 RNU6-638P-201ENST00000516582 104 ntBASIC-1.7□□□□□ -2.68
PDLIM3Q53GG5 SNORD60-201ENST00000383903 83 ntBASIC-1.71□□□□□ -2.68
PDLIM3Q53GG5 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.72□□□□□ -2.68
PDLIM3Q53GG5 MIR548N-201ENST00000408742 75 ntBASIC-1.72□□□□□ -2.68
PDLIM3Q53GG5 SNORA17.4-201ENST00000391287 132 ntBASIC-1.74□□□□□ -2.69
PDLIM3Q53GG5 SNORD45.2-201ENST00000363552 72 ntBASIC-1.75□□□□□ -2.69
PDLIM3Q53GG5 RNU6-194P-201ENST00000363862 105 ntBASIC-1.75□□□□□ -2.69
PDLIM3Q53GG5 RNA5SP405-201ENST00000363059 114 ntBASIC-1.76□□□□□ -2.69
PDLIM3Q53GG5 RNU6-361P-201ENST00000364454 107 ntBASIC-1.76□□□□□ -2.69
PDLIM3Q53GG5 AL451105.1-201ENST00000450005 189 ntBASIC-1.77□□□□□ -2.69
PDLIM3Q53GG5 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.77□□□□□ -2.69
PDLIM3Q53GG5 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.78□□□□□ -2.69
PDLIM3Q53GG5 AC097484.2-201ENST00000509147 251 ntBASIC-1.78□□□□□ -2.69
PDLIM3Q53GG5 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.8□□□□□ -2.7
PDLIM3Q53GG5 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.8□□□□□ -2.7
PDLIM3Q53GG5 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.81□□□□□ -2.7
PDLIM3Q53GG5 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.81□□□□□ -2.7
PDLIM3Q53GG5 MIR4748-201ENST00000578076 82 ntBASIC-1.81□□□□□ -2.7
PDLIM3Q53GG5 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.81□□□□□ -2.7
PDLIM3Q53GG5 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.81□□□□□ -2.7
PDLIM3Q53GG5 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.81□□□□□ -2.7
PDLIM3Q53GG5 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.81□□□□□ -2.7
PDLIM3Q53GG5 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.82□□□□□ -2.7
PDLIM3Q53GG5 RNU6-419P-201ENST00000517030 63 ntBASIC-1.82□□□□□ -2.7
PDLIM3Q53GG5 FTX_4.1-201ENST00000616291 147 ntBASIC-1.82□□□□□ -2.7
PDLIM3Q53GG5 MIR4426-201ENST00000640330 63 ntBASIC-1.82□□□□□ -2.7
PDLIM3Q53GG5 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.83□□□□□ -2.7
PDLIM3Q53GG5 AC125388.1-201ENST00000459631 156 ntBASIC-1.83□□□□□ -2.7
PDLIM3Q53GG5 RNU6-68P-201ENST00000516576 104 ntBASIC-1.83□□□□□ -2.7
PDLIM3Q53GG5 RNU6-912P-201ENST00000363800 104 ntBASIC-1.84□□□□□ -2.7
PDLIM3Q53GG5 SNORD113-3-201ENST00000364830 72 ntBASIC-1.85□□□□□ -2.71
PDLIM3Q53GG5 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.85□□□□□ -2.71
PDLIM3Q53GG5 RNU6-446P-201ENST00000362827 106 ntBASIC-1.86□□□□□ -2.71
PDLIM3Q53GG5 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.86□□□□□ -2.71
PDLIM3Q53GG5 MIR633-201ENST00000384821 98 ntBASIC-1.86□□□□□ -2.71
PDLIM3Q53GG5 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.86□□□□□ -2.71
PDLIM3Q53GG5 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.87□□□□□ -2.71
PDLIM3Q53GG5 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.88□□□□□ -2.71
PDLIM3Q53GG5 MIR379-201ENST00000362218 67 ntBASIC-1.88□□□□□ -2.71
PDLIM3Q53GG5 RNU6-590P-201ENST00000365039 107 ntBASIC-1.88□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 280.7 ms