Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNY4P29-201ENST00000410801 97 ntBASIC-1.29□□□□□ -2.62
CTCFP49711 RNU6-539P-201ENST00000516665 103 ntBASIC-1.29□□□□□ -2.62
CTCFP49711 SNORD60-201ENST00000383903 83 ntBASIC-1.3□□□□□ -2.62
CTCFP49711 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.3□□□□□ -2.62
CTCFP49711 RNU6-649P-201ENST00000384463 107 ntBASIC-1.3□□□□□ -2.62
CTCFP49711 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.3□□□□□ -2.62
CTCFP49711 RNU7-119P-201ENST00000459279 63 ntBASIC-1.3□□□□□ -2.62
CTCFP49711 RNU6-871P-201ENST00000516122 100 ntBASIC-1.3□□□□□ -2.62
CTCFP49711 RNU6-940P-201ENST00000363433 104 ntBASIC-1.31□□□□□ -2.62
CTCFP49711 SNORA17.4-201ENST00000391287 132 ntBASIC-1.31□□□□□ -2.62
CTCFP49711 RNU4-88P-201ENST00000411220 86 ntBASIC-1.31□□□□□ -2.62
CTCFP49711 AL451105.1-201ENST00000450005 189 ntBASIC-1.31□□□□□ -2.62
CTCFP49711 snoU13.10-201ENST00000459301 103 ntBASIC-1.31□□□□□ -2.62
CTCFP49711 RNU6-983P-201ENST00000516004 103 ntBASIC-1.31□□□□□ -2.62
CTCFP49711 MIR1246-201ENST00000636535 73 ntBASIC-1.31□□□□□ -2.62
CTCFP49711 RNU6-68P-201ENST00000516576 104 ntBASIC-1.32□□□□□ -2.62
CTCFP49711 SNORA26.2-201ENST00000390922 122 ntBASIC-1.33□□□□□ -2.62
CTCFP49711 MIR3938-201ENST00000582157 103 ntBASIC-1.33□□□□□ -2.62
CTCFP49711 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.33□□□□□ -2.62
CTCFP49711 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.33□□□□□ -2.62
CTCFP49711 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.34□□□□□ -2.62
CTCFP49711 RNU6-530P-201ENST00000391180 107 ntBASIC-1.34□□□□□ -2.62
CTCFP49711 RNU6-419P-201ENST00000517030 63 ntBASIC-1.34□□□□□ -2.62
CTCFP49711 RNU6-800P-201ENST00000384473 103 ntBASIC-1.35□□□□□ -2.63
CTCFP49711 SNORD78.1-201ENST00000390866 65 ntBASIC-1.35□□□□□ -2.63
CTCFP49711 AC110620.1-201ENST00000416042 228 ntBASIC-1.35□□□□□ -2.63
CTCFP49711 RNU6-980P-201ENST00000516925 103 ntBASIC-1.35□□□□□ -2.63
CTCFP49711 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.36□□□□□ -2.63
CTCFP49711 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.36□□□□□ -2.63
CTCFP49711 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.36□□□□□ -2.63
CTCFP49711 RNA5SP225-201ENST00000410874 135 ntBASIC-1.36□□□□□ -2.63
CTCFP49711 MIR466-201ENST00000580653 84 ntBASIC-1.37□□□□□ -2.63
CTCFP49711 Y_RNA.43-201ENST00000362670 111 ntBASIC-1.38□□□□□ -2.63
CTCFP49711 SNORD45.2-201ENST00000363552 72 ntBASIC-1.38□□□□□ -2.63
CTCFP49711 RNU6-119P-201ENST00000364882 107 ntBASIC-1.38□□□□□ -2.63
CTCFP49711 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.38□□□□□ -2.63
CTCFP49711 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.38□□□□□ -2.63
CTCFP49711 MIR4426-201ENST00000640330 63 ntBASIC-1.38□□□□□ -2.63
CTCFP49711 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.39□□□□□ -2.63
CTCFP49711 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.39□□□□□ -2.63
CTCFP49711 MIR1302-4-201ENST00000408701 150 ntBASIC-1.39□□□□□ -2.63
CTCFP49711 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.39□□□□□ -2.63
CTCFP49711 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.39□□□□□ -2.63
CTCFP49711 RNU6-590P-201ENST00000365039 107 ntBASIC-1.4□□□□□ -2.63
CTCFP49711 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.4□□□□□ -2.63
CTCFP49711 AC097484.2-201ENST00000509147 251 ntBASIC-1.4□□□□□ -2.63
CTCFP49711 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.4□□□□□ -2.63
CTCFP49711 MIR379-201ENST00000362218 67 ntBASIC-1.41□□□□□ -2.64
CTCFP49711 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.41□□□□□ -2.64
CTCFP49711 MIR4679-1-201ENST00000637619 75 ntBASIC-1.41□□□□□ -2.64
CTCFP49711 RNA5SP405-201ENST00000363059 114 ntBASIC-1.42□□□□□ -2.64
CTCFP49711 RNU6-776P-201ENST00000364403 104 ntBASIC-1.42□□□□□ -2.64
CTCFP49711 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.42□□□□□ -2.64
CTCFP49711 RNU6-742P-201ENST00000365289 107 ntBASIC-1.42□□□□□ -2.64
CTCFP49711 RNU6-471P-201ENST00000383944 106 ntBASIC-1.42□□□□□ -2.64
CTCFP49711 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.42□□□□□ -2.64
CTCFP49711 MIR4748-201ENST00000578076 82 ntBASIC-1.42□□□□□ -2.64
CTCFP49711 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.43□□□□□ -2.64
CTCFP49711 RNU6-300P-201ENST00000459080 104 ntBASIC-1.43□□□□□ -2.64
CTCFP49711 RNU6-176P-201ENST00000517196 105 ntBASIC-1.43□□□□□ -2.64
CTCFP49711 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.43□□□□□ -2.64
CTCFP49711 SNORD113-3-201ENST00000364830 72 ntBASIC-1.44□□□□□ -2.64
CTCFP49711 FTX_4.1-201ENST00000616291 147 ntBASIC-1.44□□□□□ -2.64
CTCFP49711 RNU6-446P-201ENST00000362827 106 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 RNU6-912P-201ENST00000363800 104 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 MIR548X-201ENST00000580069 75 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 MIR4662A-201ENST00000637499 67 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.45□□□□□ -2.64
CTCFP49711 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.46□□□□□ -2.64
CTCFP49711 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.47□□□□□ -2.64
CTCFP49711 RNU6-118P-201ENST00000516552 102 ntBASIC-1.47□□□□□ -2.64
CTCFP49711 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.48□□□□□ -2.65
CTCFP49711 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.48□□□□□ -2.65
CTCFP49711 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.48□□□□□ -2.65
CTCFP49711 AC114801.3-201ENST00000510231 177 ntBASIC-1.49□□□□□ -2.65
CTCFP49711 RNU6-194P-201ENST00000363862 105 ntBASIC-1.5□□□□□ -2.65
CTCFP49711 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.51□□□□□ -2.65
CTCFP49711 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.52□□□□□ -2.65
CTCFP49711 SNORD113-4-201ENST00000364802 75 ntBASIC-1.53□□□□□ -2.65
CTCFP49711 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.54□□□□□ -2.66
CTCFP49711 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.54□□□□□ -2.66
CTCFP49711 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.54□□□□□ -2.66
CTCFP49711 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.55□□□□□ -2.66
CTCFP49711 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.55□□□□□ -2.66
CTCFP49711 MIR496-201ENST00000385226 102 ntBASIC-1.55□□□□□ -2.66
CTCFP49711 RNU6-141P-201ENST00000410499 105 ntBASIC-1.55□□□□□ -2.66
CTCFP49711 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.56□□□□□ -2.66
CTCFP49711 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.56□□□□□ -2.66
CTCFP49711 MIR548H4-201ENST00000408689 111 ntBASIC-1.57□□□□□ -2.66
CTCFP49711 RNY4-201ENST00000516507 96 ntBASIC-1.57□□□□□ -2.66
CTCFP49711 MIR3139-201ENST00000579145 76 ntBASIC-1.57□□□□□ -2.66
CTCFP49711 RNU6-829P-201ENST00000363700 112 ntBASIC-1.59□□□□□ -2.66
CTCFP49711 MIR1254-1-201ENST00000408257 97 ntBASIC-1.59□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 177.6 ms