Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 RNU6-940P-201ENST00000363433 104 ntBASIC-1.65□□□□□ -2.67
NEDD4P46934 RNU6-776P-201ENST00000364403 104 ntBASIC-1.65□□□□□ -2.67
NEDD4P46934 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.65□□□□□ -2.67
NEDD4P46934 RNU7-119P-201ENST00000459279 63 ntBASIC-1.65□□□□□ -2.67
NEDD4P46934 MIR548AM-201ENST00000584298 74 ntBASIC-1.65□□□□□ -2.67
NEDD4P46934 RNU6-828P-201ENST00000364876 107 ntBASIC-1.66□□□□□ -2.67
NEDD4P46934 RNU6-841P-201ENST00000383872 107 ntBASIC-1.66□□□□□ -2.67
NEDD4P46934 RNU6-118P-201ENST00000516552 102 ntBASIC-1.66□□□□□ -2.68
NEDD4P46934 RNU6-980P-201ENST00000516925 103 ntBASIC-1.66□□□□□ -2.68
NEDD4P46934 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.67□□□□□ -2.68
NEDD4P46934 RNU6-800P-201ENST00000384473 103 ntBASIC-1.67□□□□□ -2.68
NEDD4P46934 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.67□□□□□ -2.68
NEDD4P46934 SNORD116.2-201ENST00000391251 93 ntBASIC-1.67□□□□□ -2.68
NEDD4P46934 RNU4-88P-201ENST00000411220 86 ntBASIC-1.67□□□□□ -2.68
NEDD4P46934 RNU6-810P-201ENST00000364001 107 ntBASIC-1.68□□□□□ -2.68
NEDD4P46934 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.68□□□□□ -2.68
NEDD4P46934 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.68□□□□□ -2.68
NEDD4P46934 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.7□□□□□ -2.68
NEDD4P46934 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.7□□□□□ -2.68
NEDD4P46934 SNORA40B-201ENST00000385573 128 ntBASIC-1.7□□□□□ -2.68
NEDD4P46934 AC013734.1-201ENST00000619329 111 ntBASIC-1.7□□□□□ -2.68
NEDD4P46934 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.71□□□□□ -2.68
NEDD4P46934 RNA5SP93-201ENST00000362525 114 ntBASIC-1.72□□□□□ -2.69
NEDD4P46934 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.73□□□□□ -2.69
NEDD4P46934 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.73□□□□□ -2.69
NEDD4P46934 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.74□□□□□ -2.69
NEDD4P46934 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.74□□□□□ -2.69
NEDD4P46934 RNU6-520P-201ENST00000384717 104 ntBASIC-1.74□□□□□ -2.69
NEDD4P46934 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.74□□□□□ -2.69
NEDD4P46934 RNA5SP405-201ENST00000363059 114 ntBASIC-1.75□□□□□ -2.69
NEDD4P46934 RNU6-974P-201ENST00000384099 108 ntBASIC-1.75□□□□□ -2.69
NEDD4P46934 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.75□□□□□ -2.69
NEDD4P46934 MIR548W-201ENST00000581970 74 ntBASIC-1.75□□□□□ -2.69
NEDD4P46934 MIR3938-201ENST00000582157 103 ntBASIC-1.75□□□□□ -2.69
NEDD4P46934 U6.97-201ENST00000636904 101 ntBASIC-1.76□□□□□ -2.69
NEDD4P46934 snoU13.10-201ENST00000459301 103 ntBASIC-1.77□□□□□ -2.69
NEDD4P46934 MIR466-201ENST00000580653 84 ntBASIC-1.77□□□□□ -2.69
NEDD4P46934 SNORD45.2-201ENST00000363552 72 ntBASIC-1.78□□□□□ -2.69
NEDD4P46934 SNORA40.16-201ENST00000517238 121 ntBASIC-1.78□□□□□ -2.69
NEDD4P46934 AC110620.1-201ENST00000416042 228 ntBASIC-1.79□□□□□ -2.7
NEDD4P46934 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.79□□□□□ -2.7
NEDD4P46934 RNU6-194P-201ENST00000363862 105 ntBASIC-1.8□□□□□ -2.7
NEDD4P46934 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.8□□□□□ -2.7
NEDD4P46934 RNY4-201ENST00000516507 96 ntBASIC-1.8□□□□□ -2.7
NEDD4P46934 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.8□□□□□ -2.7
NEDD4P46934 RNY3P8-201ENST00000411366 126 ntBASIC-1.81□□□□□ -2.7
NEDD4P46934 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.82□□□□□ -2.7
NEDD4P46934 MIR3139-201ENST00000579145 76 ntBASIC-1.82□□□□□ -2.7
NEDD4P46934 RNU6-471P-201ENST00000383944 106 ntBASIC-1.83□□□□□ -2.7
NEDD4P46934 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.83□□□□□ -2.7
NEDD4P46934 AC114801.3-201ENST00000510231 177 ntBASIC-1.84□□□□□ -2.7
NEDD4P46934 SNORD60-201ENST00000383903 83 ntBASIC-1.85□□□□□ -2.71
NEDD4P46934 MIR581-201ENST00000384895 96 ntBASIC-1.85□□□□□ -2.71
NEDD4P46934 SNORA72.7-201ENST00000516349 94 ntBASIC-1.86□□□□□ -2.71
NEDD4P46934 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.87□□□□□ -2.71
NEDD4P46934 RNU6-361P-201ENST00000364454 107 ntBASIC-1.88□□□□□ -2.71
NEDD4P46934 AL451105.1-201ENST00000450005 189 ntBASIC-1.88□□□□□ -2.71
NEDD4P46934 SNORD18C-201ENST00000362704 69 ntBASIC-1.89□□□□□ -2.71
NEDD4P46934 MT-TM-201ENST00000387377 68 ntBASIC-1.89□□□□□ -2.71
NEDD4P46934 MIR4748-201ENST00000578076 82 ntBASIC-1.89□□□□□ -2.71
NEDD4P46934 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.9□□□□□ -2.71
NEDD4P46934 SNORA17.4-201ENST00000391287 132 ntBASIC-1.91□□□□□ -2.71
NEDD4P46934 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.91□□□□□ -2.72
NEDD4P46934 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.91□□□□□ -2.72
NEDD4P46934 MIR202-201ENST00000362219 110 ntBASIC-1.92□□□□□ -2.72
NEDD4P46934 RNU6-530P-201ENST00000391180 107 ntBASIC-1.92□□□□□ -2.72
NEDD4P46934 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.92□□□□□ -2.72
NEDD4P46934 MIR548N-201ENST00000408742 75 ntBASIC-1.93□□□□□ -2.72
NEDD4P46934 AC097484.2-201ENST00000509147 251 ntBASIC-1.93□□□□□ -2.72
NEDD4P46934 RNU6-419P-201ENST00000517030 63 ntBASIC-1.93□□□□□ -2.72
NEDD4P46934 FTX_4.1-201ENST00000616291 147 ntBASIC-1.93□□□□□ -2.72
NEDD4P46934 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.94□□□□□ -2.72
NEDD4P46934 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.95□□□□□ -2.72
NEDD4P46934 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.97□□□□□ -2.73
NEDD4P46934 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.97□□□□□ -2.73
NEDD4P46934 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.97□□□□□ -2.73
NEDD4P46934 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.97□□□□□ -2.73
NEDD4P46934 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.97□□□□□ -2.73
NEDD4P46934 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.97□□□□□ -2.73
NEDD4P46934 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.98□□□□□ -2.73
NEDD4P46934 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.98□□□□□ -2.73
NEDD4P46934 SNORD113-3-201ENST00000364830 72 ntBASIC-1.99□□□□□ -2.73
NEDD4P46934 RNU6-176P-201ENST00000517196 105 ntBASIC-1.99□□□□□ -2.73
NEDD4P46934 RNU6-1079P-201ENST00000362861 110 ntBASIC-2□□□□□ -2.73
NEDD4P46934 RNU6-141P-201ENST00000410499 105 ntBASIC-2□□□□□ -2.73
NEDD4P46934 RNU6-638P-201ENST00000516582 104 ntBASIC-2.01□□□□□ -2.73
NEDD4P46934 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.02□□□□□ -2.73
NEDD4P46934 MIR4426-201ENST00000640330 63 ntBASIC-2.02□□□□□ -2.73
NEDD4P46934 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.03□□□□□ -2.73
NEDD4P46934 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.04□□□□□ -2.74
NEDD4P46934 RNU6-68P-201ENST00000516576 104 ntBASIC-2.04□□□□□ -2.74
NEDD4P46934 MIR548X-201ENST00000580069 75 ntBASIC-2.04□□□□□ -2.74
NEDD4P46934 RNY4P9-201ENST00000363194 97 ntBASIC-2.06□□□□□ -2.74
NEDD4P46934 RNU6-912P-201ENST00000363800 104 ntBASIC-2.06□□□□□ -2.74
NEDD4P46934 MIR379-201ENST00000362218 67 ntBASIC-2.07□□□□□ -2.74
NEDD4P46934 RNU6-590P-201ENST00000365039 107 ntBASIC-2.07□□□□□ -2.74
NEDD4P46934 RNU6-300P-201ENST00000459080 104 ntBASIC-2.07□□□□□ -2.74
NEDD4P46934 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.08□□□□□ -2.74
NEDD4P46934 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.09□□□□□ -2.74
NEDD4P46934 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.09□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 195.4 ms