Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.44□□□□□ -2.64
TNFRSF4P43489 MIR548H1-201ENST00000408610 102 ntBASIC-1.44□□□□□ -2.64
TNFRSF4P43489 RNA5SP93-201ENST00000362525 114 ntBASIC-1.45□□□□□ -2.64
TNFRSF4P43489 MIR466-201ENST00000580653 84 ntBASIC-1.45□□□□□ -2.64
TNFRSF4P43489 RNA5SP86-201ENST00000390869 98 ntBASIC-1.46□□□□□ -2.64
TNFRSF4P43489 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.46□□□□□ -2.64
TNFRSF4P43489 RNY3P8-201ENST00000411366 126 ntBASIC-1.46□□□□□ -2.64
TNFRSF4P43489 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.46□□□□□ -2.64
TNFRSF4P43489 RNY4-201ENST00000516507 96 ntBASIC-1.46□□□□□ -2.64
TNFRSF4P43489 MIR3938-201ENST00000582157 103 ntBASIC-1.46□□□□□ -2.64
TNFRSF4P43489 RNU6-520P-201ENST00000384717 104 ntBASIC-1.47□□□□□ -2.64
TNFRSF4P43489 SNORA40.16-201ENST00000517238 121 ntBASIC-1.47□□□□□ -2.64
TNFRSF4P43489 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.47□□□□□ -2.64
TNFRSF4P43489 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.48□□□□□ -2.65
TNFRSF4P43489 SNORA72.7-201ENST00000516349 94 ntBASIC-1.48□□□□□ -2.65
TNFRSF4P43489 AC114801.3-201ENST00000510231 177 ntBASIC-1.49□□□□□ -2.65
TNFRSF4P43489 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.49□□□□□ -2.65
TNFRSF4P43489 RNU6-980P-201ENST00000516925 103 ntBASIC-1.5□□□□□ -2.65
TNFRSF4P43489 U6.97-201ENST00000636904 101 ntBASIC-1.5□□□□□ -2.65
TNFRSF4P43489 RNU6-695P-201ENST00000391157 104 ntBASIC-1.51□□□□□ -2.65
TNFRSF4P43489 AC110620.1-201ENST00000416042 228 ntBASIC-1.51□□□□□ -2.65
TNFRSF4P43489 AC013734.1-201ENST00000619329 111 ntBASIC-1.51□□□□□ -2.65
TNFRSF4P43489 SNORD45.2-201ENST00000363552 72 ntBASIC-1.54□□□□□ -2.66
TNFRSF4P43489 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.54□□□□□ -2.66
TNFRSF4P43489 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.54□□□□□ -2.66
TNFRSF4P43489 RNU6-471P-201ENST00000383944 106 ntBASIC-1.55□□□□□ -2.66
TNFRSF4P43489 MIR202-201ENST00000362219 110 ntBASIC-1.56□□□□□ -2.66
TNFRSF4P43489 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.57□□□□□ -2.66
TNFRSF4P43489 SNORD60-201ENST00000383903 83 ntBASIC-1.57□□□□□ -2.66
TNFRSF4P43489 RNU6-530P-201ENST00000391180 107 ntBASIC-1.57□□□□□ -2.66
TNFRSF4P43489 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.58□□□□□ -2.66
TNFRSF4P43489 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.58□□□□□ -2.66
TNFRSF4P43489 AL451105.1-201ENST00000450005 189 ntBASIC-1.58□□□□□ -2.66
TNFRSF4P43489 MIR3139-201ENST00000579145 76 ntBASIC-1.58□□□□□ -2.66
TNFRSF4P43489 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.59□□□□□ -2.66
TNFRSF4P43489 AC108019.1-201ENST00000512540 175 ntBASIC-1.59□□□□□ -2.66
TNFRSF4P43489 MIR664B-201ENST00000626756 61 ntBASIC-1.59□□□□□ -2.66
TNFRSF4P43489 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.6□□□□□ -2.67
TNFRSF4P43489 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.6□□□□□ -2.67
TNFRSF4P43489 MIR3123-201ENST00000583417 75 ntBASIC-1.6□□□□□ -2.67
TNFRSF4P43489 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.62□□□□□ -2.67
TNFRSF4P43489 MT-TM-201ENST00000387377 68 ntBASIC-1.62□□□□□ -2.67
TNFRSF4P43489 RNU6-638P-201ENST00000516582 104 ntBASIC-1.62□□□□□ -2.67
TNFRSF4P43489 SNORD18C-201ENST00000362704 69 ntBASIC-1.63□□□□□ -2.67
TNFRSF4P43489 SNORA17.4-201ENST00000391287 132 ntBASIC-1.63□□□□□ -2.67
TNFRSF4P43489 MIR4756-201ENST00000577874 78 ntBASIC-1.64□□□□□ -2.67
TNFRSF4P43489 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.65□□□□□ -2.67
TNFRSF4P43489 RNU6-361P-201ENST00000364454 107 ntBASIC-1.65□□□□□ -2.67
TNFRSF4P43489 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.65□□□□□ -2.67
TNFRSF4P43489 RNU6-419P-201ENST00000517030 63 ntBASIC-1.65□□□□□ -2.67
TNFRSF4P43489 MIR487B-201ENST00000385021 84 ntBASIC-1.66□□□□□ -2.68
TNFRSF4P43489 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.66□□□□□ -2.68
TNFRSF4P43489 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.66□□□□□ -2.68
TNFRSF4P43489 MIR4426-201ENST00000640330 63 ntBASIC-1.66□□□□□ -2.68
TNFRSF4P43489 RNU6-841P-201ENST00000383872 107 ntBASIC-1.67□□□□□ -2.68
TNFRSF4P43489 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.67□□□□□ -2.68
TNFRSF4P43489 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.67□□□□□ -2.68
TNFRSF4P43489 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.68□□□□□ -2.68
TNFRSF4P43489 MIR548N-201ENST00000408742 75 ntBASIC-1.68□□□□□ -2.68
TNFRSF4P43489 RNA5SP405-201ENST00000363059 114 ntBASIC-1.69□□□□□ -2.68
TNFRSF4P43489 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.7□□□□□ -2.68
TNFRSF4P43489 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.7□□□□□ -2.68
TNFRSF4P43489 RNU6-194P-201ENST00000363862 105 ntBASIC-1.71□□□□□ -2.68
TNFRSF4P43489 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.71□□□□□ -2.68
TNFRSF4P43489 AC125388.1-201ENST00000459631 156 ntBASIC-1.71□□□□□ -2.68
TNFRSF4P43489 MIR581-201ENST00000384895 96 ntBASIC-1.72□□□□□ -2.68
TNFRSF4P43489 MIR548AM-201ENST00000584298 74 ntBASIC-1.72□□□□□ -2.68
TNFRSF4P43489 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.72□□□□□ -2.68
TNFRSF4P43489 RNU6-300P-201ENST00000459080 104 ntBASIC-1.73□□□□□ -2.69
TNFRSF4P43489 RNU6-590P-201ENST00000365039 107 ntBASIC-1.74□□□□□ -2.69
TNFRSF4P43489 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.74□□□□□ -2.69
TNFRSF4P43489 RNU6-446P-201ENST00000362827 106 ntBASIC-1.75□□□□□ -2.69
TNFRSF4P43489 MIR548X-201ENST00000580069 75 ntBASIC-1.75□□□□□ -2.69
TNFRSF4P43489 RNU6-176P-201ENST00000517196 105 ntBASIC-1.76□□□□□ -2.69
TNFRSF4P43489 MIR633-201ENST00000384821 98 ntBASIC-1.77□□□□□ -2.69
TNFRSF4P43489 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.78□□□□□ -2.69
TNFRSF4P43489 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.79□□□□□ -2.7
TNFRSF4P43489 snoU13.10-201ENST00000459301 103 ntBASIC-1.79□□□□□ -2.7
TNFRSF4P43489 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.8□□□□□ -2.7
TNFRSF4P43489 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.81□□□□□ -2.7
TNFRSF4P43489 RNU6-742P-201ENST00000365289 107 ntBASIC-1.81□□□□□ -2.7
TNFRSF4P43489 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.82□□□□□ -2.7
TNFRSF4P43489 MIR379-201ENST00000362218 67 ntBASIC-1.83□□□□□ -2.7
TNFRSF4P43489 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.83□□□□□ -2.7
TNFRSF4P43489 MIR548W-201ENST00000581970 74 ntBASIC-1.83□□□□□ -2.7
TNFRSF4P43489 RNU6-829P-201ENST00000363700 112 ntBASIC-1.84□□□□□ -2.7
TNFRSF4P43489 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.84□□□□□ -2.7
TNFRSF4P43489 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.85□□□□□ -2.71
TNFRSF4P43489 SNORD113-4-201ENST00000364802 75 ntBASIC-1.86□□□□□ -2.71
TNFRSF4P43489 RNU4-88P-201ENST00000411220 86 ntBASIC-1.86□□□□□ -2.71
TNFRSF4P43489 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.87□□□□□ -2.71
TNFRSF4P43489 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.88□□□□□ -2.71
TNFRSF4P43489 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.89□□□□□ -2.71
TNFRSF4P43489 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.9□□□□□ -2.71
TNFRSF4P43489 RNU6-912P-201ENST00000363800 104 ntBASIC-1.91□□□□□ -2.72
TNFRSF4P43489 RNU4-33P-201ENST00000364316 85 ntBASIC-1.91□□□□□ -2.72
TNFRSF4P43489 AC139453.2-201ENST00000487255 133 ntBASIC-1.91□□□□□ -2.72
TNFRSF4P43489 RNU6-68P-201ENST00000516576 104 ntBASIC-1.91□□□□□ -2.72
TNFRSF4P43489 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.92□□□□□ -2.72
TNFRSF4P43489 AC079150.2-201ENST00000443733 78 ntBASIC-1.92□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 171.9 ms