Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR548AL-201ENST00000578416 97 ntBASIC-4.85□□□□□ -3.19
CUX1P39880 MIR3171-201ENST00000584270 74 ntBASIC-4.86□□□□□ -3.19
CUX1P39880 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-4.86□□□□□ -3.19
CUX1P39880 RNU6-1023P-201ENST00000516137 106 ntBASIC-4.87□□□□□ -3.19
CUX1P39880 MTND4P29-201ENST00000503122 1372 ntBASIC-4.87□□□□□ -3.19
CUX1P39880 RNU6-255P-201ENST00000516957 105 ntBASIC-4.87□□□□□ -3.19
CUX1P39880 Y_RNA.216-201ENST00000364205 93 ntBASIC-4.88□□□□□ -3.19
CUX1P39880 Y_RNA.273-201ENST00000364703 102 ntBASIC-4.88□□□□□ -3.19
CUX1P39880 MTATP8P1-201ENST00000467115 207 ntBASIC-4.89□□□□□ -3.19
CUX1P39880 RNU6-687P-201ENST00000516443 89 ntBASIC-4.89□□□□□ -3.19
CUX1P39880 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-4.89□□□□□ -3.19
CUX1P39880 RNU6-907P-201ENST00000390924 102 ntBASIC-4.91□□□□□ -3.2
CUX1P39880 Y_RNA.297-201ENST00000364950 91 ntBASIC-4.92□□□□□ -3.2
CUX1P39880 RNU6-623P-201ENST00000363143 105 ntBASIC-4.92□□□□□ -3.2
CUX1P39880 RNU6-627P-201ENST00000364032 102 ntBASIC-4.93□□□□□ -3.2
CUX1P39880 RNU6-257P-201ENST00000410238 98 ntBASIC-4.94□□□□□ -3.2
CUX1P39880 RNU6-804P-201ENST00000384286 107 ntBASIC-4.95□□□□□ -3.2
CUX1P39880 Y_RNA.138-201ENST00000363462 102 ntBASIC-4.96□□□□□ -3.2
CUX1P39880 RNU6-1204P-201ENST00000363948 107 ntBASIC-4.96□□□□□ -3.2
CUX1P39880 MIR3134-201ENST00000579433 74 ntBASIC-4.96□□□□□ -3.2
CUX1P39880 Y_RNA.619-201ENST00000410951 90 ntBASIC-4.97□□□□□ -3.2
CUX1P39880 RNU6-808P-201ENST00000391233 108 ntBASIC-4.97□□□□□ -3.21
CUX1P39880 Y_RNA.788-201ENST00000622394 112 ntBASIC-4.98□□□□□ -3.21
CUX1P39880 Y_RNA.460-201ENST00000384255 102 ntBASIC-4.99□□□□□ -3.21
CUX1P39880 RNU6-675P-201ENST00000384236 104 ntBASIC-5□□□□□ -3.21
CUX1P39880 AC062037.2-201ENST00000610137 73 ntBASIC-5□□□□□ -3.21
CUX1P39880 MIR4760-201ENST00000585040 80 ntBASIC-5.01□□□□□ -3.21
CUX1P39880 RNU6-663P-201ENST00000391105 106 ntBASIC-5.02□□□□□ -3.21
CUX1P39880 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-5.02□□□□□ -3.21
CUX1P39880 Y_RNA.343-201ENST00000365354 112 ntBASIC-5.02□□□□□ -3.21
CUX1P39880 AC090425.1-201ENST00000610007 140 ntBASIC-5.02□□□□□ -3.21
CUX1P39880 RNU6-1312P-201ENST00000362425 108 ntBASIC-5.05□□□□□ -3.22
CUX1P39880 SNORA25.4-201ENST00000363666 124 ntBASIC-5.06□□□□□ -3.22
CUX1P39880 MIR548F4-201ENST00000408515 105 ntBASIC-5.06□□□□□ -3.22
CUX1P39880 RNU4-33P-201ENST00000364316 85 ntBASIC-5.07□□□□□ -3.22
CUX1P39880 Y_RNA.316-201ENST00000365118 111 ntBASIC-5.08□□□□□ -3.22
CUX1P39880 MT-TD-201ENST00000387419 68 ntBASIC-5.08□□□□□ -3.22
CUX1P39880 MIR4511-201ENST00000582784 87 ntBASIC-5.08□□□□□ -3.22
CUX1P39880 MALAT1.1-201ENST00000618249 95 ntBASIC-5.08□□□□□ -3.22
CUX1P39880 RNU6-59P-201ENST00000384787 107 ntBASIC-5.09□□□□□ -3.22
CUX1P39880 MTND5P41-201ENST00000517498 206 ntBASIC-5.1□□□□□ -3.23
CUX1P39880 RNU6-209P-201ENST00000384118 107 ntBASIC-5.12□□□□□ -3.23
CUX1P39880 MIR1245B-201ENST00000636115 69 ntBASIC-5.12□□□□□ -3.23
CUX1P39880 RNU6-620P-201ENST00000384017 96 ntBASIC-5.13□□□□□ -3.23
CUX1P39880 SNORA40.13-201ENST00000516379 120 ntBASIC-5.13□□□□□ -3.23
CUX1P39880 Y_RNA.149-201ENST00000363558 117 ntBASIC-5.14□□□□□ -3.23
CUX1P39880 Y_RNA.422-201ENST00000384054 114 ntBASIC-5.16□□□□□ -3.24
CUX1P39880 AC103706.3-201ENST00000636297 85 ntBASIC-5.16□□□□□ -3.24
CUX1P39880 SNORD113-1-201ENST00000365321 69 ntBASIC-5.18□□□□□ -3.24
CUX1P39880 IGLL4P-201ENST00000614590 133 ntBASIC-5.18□□□□□ -3.24
CUX1P39880 MTND5P20-201ENST00000448677 143 ntBASIC-5.18□□□□□ -3.24
CUX1P39880 RNU6-634P-201ENST00000459134 106 ntBASIC-5.18□□□□□ -3.24
CUX1P39880 AL353621.2-201ENST00000605340 133 ntBASIC-5.18□□□□□ -3.24
CUX1P39880 RNU6-959P-201ENST00000384671 107 ntBASIC-5.19□□□□□ -3.24
CUX1P39880 RNU6-986P-201ENST00000363133 102 ntBASIC-5.2□□□□□ -3.24
CUX1P39880 snoMBII-202.2-201ENST00000517263 86 ntBASIC-5.2□□□□□ -3.24
CUX1P39880 RNU6-446P-201ENST00000362827 106 ntBASIC-5.21□□□□□ -3.24
CUX1P39880 MIR4712-201ENST00000583750 82 ntBASIC-5.21□□□□□ -3.24
CUX1P39880 SNORD30.1-201ENST00000391309 70 ntBASIC-5.22□□□□□ -3.24
CUX1P39880 MIR494-201ENST00000349529 81 ntBASIC-5.23□□□□□ -3.25
CUX1P39880 RNU6-200P-201ENST00000364743 107 ntBASIC-5.24□□□□□ -3.25
CUX1P39880 AP000770.2-201ENST00000623694 100 ntBASIC-5.24□□□□□ -3.25
CUX1P39880 AC110620.1-201ENST00000416042 228 ntBASIC-5.25□□□□□ -3.25
CUX1P39880 RNU6-844P-201ENST00000517175 102 ntBASIC-5.25□□□□□ -3.25
CUX1P39880 MIR5588-201ENST00000581890 63 ntBASIC-5.25□□□□□ -3.25
CUX1P39880 U7.4-201ENST00000614961 63 ntBASIC-5.25□□□□□ -3.25
CUX1P39880 RNU7-171P-201ENST00000459581 62 ntBASIC-5.26□□□□□ -3.25
CUX1P39880 Y_RNA.94-201ENST00000363068 106 ntBASIC-5.27□□□□□ -3.25
CUX1P39880 MIR1302-3-201ENST00000408128 138 ntBASIC-5.28□□□□□ -3.25
CUX1P39880 RNU7-200P-201ENST00000516105 62 ntBASIC-5.28□□□□□ -3.26
CUX1P39880 SNORD113-4-201ENST00000364802 75 ntBASIC-5.3□□□□□ -3.26
CUX1P39880 SNORD116-14-201ENST00000383894 92 ntBASIC-5.3□□□□□ -3.26
CUX1P39880 SNORD116-17-201ENST00000383929 92 ntBASIC-5.3□□□□□ -3.26
CUX1P39880 SNORD116-15-201ENST00000384445 92 ntBASIC-5.3□□□□□ -3.26
CUX1P39880 SNORD116-19-201ENST00000384729 92 ntBASIC-5.3□□□□□ -3.26
CUX1P39880 Y_RNA.73-201ENST00000362910 113 ntBASIC-5.31□□□□□ -3.26
CUX1P39880 AL031737.1-201ENST00000450125 223 ntBASIC-5.32□□□□□ -3.26
CUX1P39880 RNU6-838P-201ENST00000363399 108 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 Y_RNA.379-201ENST00000365653 102 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 MIR568-201ENST00000385036 95 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 MTCYBP6-201ENST00000441810 138 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 AC114801.3-201ENST00000510231 177 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 Y_RNA.702-201ENST00000516843 96 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 AC008737.2-201ENST00000599446 118 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 MIR4679-1-201ENST00000637619 75 ntBASIC-5.35□□□□□ -3.27
CUX1P39880 RNU6-81P-201ENST00000365608 104 ntBASIC-5.36□□□□□ -3.27
CUX1P39880 RNU6-1160P-201ENST00000384546 104 ntBASIC-5.36□□□□□ -3.27
CUX1P39880 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-5.36□□□□□ -3.27
CUX1P39880 MTCYBP9-201ENST00000431021 303 ntBASIC-5.36□□□□□ -3.27
CUX1P39880 Y_RNA.489-201ENST00000384410 101 ntBASIC-5.38□□□□□ -3.27
CUX1P39880 RNU6-589P-201ENST00000516485 107 ntBASIC-5.38□□□□□ -3.27
CUX1P39880 U6.111-201ENST00000636093 83 ntBASIC-5.38□□□□□ -3.27
CUX1P39880 RNU6-294P-201ENST00000364999 102 ntBASIC-5.38□□□□□ -3.27
CUX1P39880 MIR488-201ENST00000365739 83 ntBASIC-5.39□□□□□ -3.27
CUX1P39880 RNU6-787P-201ENST00000384032 107 ntBASIC-5.39□□□□□ -3.27
CUX1P39880 AC044792.1-201ENST00000593294 196 ntBASIC-5.41□□□□□ -3.28
CUX1P39880 MIR450A1-201ENST00000362262 91 ntBASIC-5.42□□□□□ -3.28
CUX1P39880 Y_RNA.593-201ENST00000410292 98 ntBASIC-5.44□□□□□ -3.28
CUX1P39880 RNU6-346P-201ENST00000516288 111 ntBASIC-5.45□□□□□ -3.28
CUX1P39880 Y_RNA.193-201ENST00000363979 102 ntBASIC-5.47□□□□□ -3.28
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms