Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AC013734.1-201ENST00000619329 111 ntBASIC-1.67□□□□□ -2.68
SCN1AP35498 MIR379-201ENST00000362218 67 ntBASIC-1.68□□□□□ -2.68
SCN1AP35498 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.68□□□□□ -2.68
SCN1AP35498 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.68□□□□□ -2.68
SCN1AP35498 FTX_4.1-201ENST00000616291 147 ntBASIC-1.68□□□□□ -2.68
SCN1AP35498 SNORA26.2-201ENST00000390922 122 ntBASIC-1.69□□□□□ -2.68
SCN1AP35498 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.69□□□□□ -2.68
SCN1AP35498 MIR548N-201ENST00000408742 75 ntBASIC-1.69□□□□□ -2.68
SCN1AP35498 MIR3938-201ENST00000582157 103 ntBASIC-1.69□□□□□ -2.68
SCN1AP35498 RNU7-119P-201ENST00000459279 63 ntBASIC-1.7□□□□□ -2.68
SCN1AP35498 RNY4P7-201ENST00000364600 96 ntBASIC-1.71□□□□□ -2.68
SCN1AP35498 RNU6-857P-201ENST00000515893 110 ntBASIC-1.71□□□□□ -2.68
SCN1AP35498 MIR4748-201ENST00000578076 82 ntBASIC-1.71□□□□□ -2.68
SCN1AP35498 MIR4511-201ENST00000582784 87 ntBASIC-1.71□□□□□ -2.68
SCN1AP35498 RNU6-871P-201ENST00000516122 100 ntBASIC-1.71□□□□□ -2.68
SCN1AP35498 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.72□□□□□ -2.68
SCN1AP35498 RNU6-520P-201ENST00000384717 104 ntBASIC-1.72□□□□□ -2.68
SCN1AP35498 SNORA40.16-201ENST00000517238 121 ntBASIC-1.72□□□□□ -2.68
SCN1AP35498 RNY4P9-201ENST00000363194 97 ntBASIC-1.73□□□□□ -2.69
SCN1AP35498 RNU6-361P-201ENST00000364454 107 ntBASIC-1.73□□□□□ -2.69
SCN1AP35498 SNORD45.2-201ENST00000363552 72 ntBASIC-1.73□□□□□ -2.69
SCN1AP35498 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.73□□□□□ -2.69
SCN1AP35498 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.73□□□□□ -2.69
SCN1AP35498 RNU6-828P-201ENST00000364876 107 ntBASIC-1.74□□□□□ -2.69
SCN1AP35498 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.74□□□□□ -2.69
SCN1AP35498 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.74□□□□□ -2.69
SCN1AP35498 RNU6-539P-201ENST00000516665 103 ntBASIC-1.74□□□□□ -2.69
SCN1AP35498 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.74□□□□□ -2.69
SCN1AP35498 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.74□□□□□ -2.69
SCN1AP35498 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.74□□□□□ -2.69
SCN1AP35498 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.74□□□□□ -2.69
SCN1AP35498 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.75□□□□□ -2.69
SCN1AP35498 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.75□□□□□ -2.69
SCN1AP35498 SNORD30.1-201ENST00000391309 70 ntBASIC-1.75□□□□□ -2.69
SCN1AP35498 RNU6-231P-201ENST00000517122 103 ntBASIC-1.76□□□□□ -2.69
SCN1AP35498 RNY4P29-201ENST00000410801 97 ntBASIC-1.76□□□□□ -2.69
SCN1AP35498 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.76□□□□□ -2.69
SCN1AP35498 MIR202-201ENST00000362219 110 ntBASIC-1.77□□□□□ -2.69
SCN1AP35498 RNA5SP93-201ENST00000362525 114 ntBASIC-1.78□□□□□ -2.69
SCN1AP35498 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.78□□□□□ -2.69
SCN1AP35498 SNORD113-3-201ENST00000364830 72 ntBASIC-1.78□□□□□ -2.69
SCN1AP35498 Y_RNA.43-201ENST00000362670 111 ntBASIC-1.79□□□□□ -2.7
SCN1AP35498 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.79□□□□□ -2.7
SCN1AP35498 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.79□□□□□ -2.7
SCN1AP35498 MT-TM-201ENST00000387377 68 ntBASIC-1.79□□□□□ -2.7
SCN1AP35498 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.79□□□□□ -2.7
SCN1AP35498 SNORD73B-201ENST00000364394 72 ntBASIC-1.8□□□□□ -2.7
SCN1AP35498 AC097484.2-201ENST00000509147 251 ntBASIC-1.8□□□□□ -2.7
SCN1AP35498 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.81□□□□□ -2.7
SCN1AP35498 MIR581-201ENST00000384895 96 ntBASIC-1.81□□□□□ -2.7
SCN1AP35498 RNA5SP170-201ENST00000517150 101 ntBASIC-1.81□□□□□ -2.7
SCN1AP35498 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.81□□□□□ -2.7
SCN1AP35498 MIR1302-4-201ENST00000408701 150 ntBASIC-1.81□□□□□ -2.7
SCN1AP35498 MIR4426-201ENST00000640330 63 ntBASIC-1.81□□□□□ -2.7
SCN1AP35498 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.82□□□□□ -2.7
SCN1AP35498 MIR496-201ENST00000385226 102 ntBASIC-1.82□□□□□ -2.7
SCN1AP35498 AC103706.3-201ENST00000636297 85 ntBASIC-1.83□□□□□ -2.7
SCN1AP35498 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.84□□□□□ -2.7
SCN1AP35498 RNU6-573P-201ENST00000383938 106 ntBASIC-1.84□□□□□ -2.7
SCN1AP35498 SNORA17.4-201ENST00000391287 132 ntBASIC-1.84□□□□□ -2.7
SCN1AP35498 SNORD78.1-201ENST00000390866 65 ntBASIC-1.84□□□□□ -2.7
SCN1AP35498 AC110620.1-201ENST00000416042 228 ntBASIC-1.84□□□□□ -2.7
SCN1AP35498 RNU6-471P-201ENST00000383944 106 ntBASIC-1.85□□□□□ -2.71
SCN1AP35498 RNU6-530P-201ENST00000391180 107 ntBASIC-1.85□□□□□ -2.71
SCN1AP35498 RNA5SP225-201ENST00000410874 135 ntBASIC-1.86□□□□□ -2.71
SCN1AP35498 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.86□□□□□ -2.71
SCN1AP35498 RNU6-912P-201ENST00000363800 104 ntBASIC-1.86□□□□□ -2.71
SCN1AP35498 RNU6-68P-201ENST00000516576 104 ntBASIC-1.88□□□□□ -2.71
SCN1AP35498 RNU6-300P-201ENST00000459080 104 ntBASIC-1.9□□□□□ -2.71
SCN1AP35498 RNU6-176P-201ENST00000517196 105 ntBASIC-1.9□□□□□ -2.71
SCN1AP35498 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.91□□□□□ -2.71
SCN1AP35498 MIR548X-201ENST00000580069 75 ntBASIC-1.91□□□□□ -2.72
SCN1AP35498 RNU6-141P-201ENST00000410499 105 ntBASIC-1.92□□□□□ -2.72
SCN1AP35498 MIR4662A-201ENST00000637499 67 ntBASIC-1.92□□□□□ -2.72
SCN1AP35498 AL451105.1-201ENST00000450005 189 ntBASIC-1.93□□□□□ -2.72
SCN1AP35498 RNU6-122P-201ENST00000516818 107 ntBASIC-1.93□□□□□ -2.72
SCN1AP35498 U6.111-201ENST00000636093 83 ntBASIC-1.93□□□□□ -2.72
SCN1AP35498 RNU6-776P-201ENST00000364403 104 ntBASIC-1.94□□□□□ -2.72
SCN1AP35498 RNU6-590P-201ENST00000365039 107 ntBASIC-1.94□□□□□ -2.72
SCN1AP35498 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.94□□□□□ -2.72
SCN1AP35498 SNORD54-201ENST00000459159 67 ntBASIC-1.94□□□□□ -2.72
SCN1AP35498 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.94□□□□□ -2.72
SCN1AP35498 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.95□□□□□ -2.72
SCN1AP35498 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.95□□□□□ -2.72
SCN1AP35498 RNU6-419P-201ENST00000517030 63 ntBASIC-1.96□□□□□ -2.72
SCN1AP35498 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.96□□□□□ -2.72
SCN1AP35498 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.96□□□□□ -2.72
SCN1AP35498 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.97□□□□□ -2.72
SCN1AP35498 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.99□□□□□ -2.73
SCN1AP35498 RNU6-800P-201ENST00000384473 103 ntBASIC-1.99□□□□□ -2.73
SCN1AP35498 RNU6-345P-201ENST00000517001 107 ntBASIC-1.99□□□□□ -2.73
SCN1AP35498 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.01□□□□□ -2.73
SCN1AP35498 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-2.01□□□□□ -2.73
SCN1AP35498 MIR4317-201ENST00000637586 65 ntBASIC-2.01□□□□□ -2.73
SCN1AP35498 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.02□□□□□ -2.73
SCN1AP35498 RNY4P25-201ENST00000459254 96 ntBASIC-2.02□□□□□ -2.73
SCN1AP35498 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.02□□□□□ -2.73
SCN1AP35498 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.03□□□□□ -2.73
SCN1AP35498 RNU6-1275P-201ENST00000391087 107 ntBASIC-2.03□□□□□ -2.73
SCN1AP35498 Y_RNA.685-201ENST00000516532 108 ntBASIC-2.03□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms