Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.79□□□□□ -2.7
SHMT2P34897 RNU6-912P-201ENST00000363800 104 ntBASIC-1.8□□□□□ -2.7
SHMT2P34897 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.8□□□□□ -2.7
SHMT2P34897 RNU6-406P-201ENST00000516470 107 ntBASIC-1.8□□□□□ -2.7
SHMT2P34897 FTX_4.1-201ENST00000616291 147 ntBASIC-1.8□□□□□ -2.7
SHMT2P34897 RNY4P27-201ENST00000363341 96 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 RNU6-820P-201ENST00000384273 107 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 MIR4426-201ENST00000640330 63 ntBASIC-1.81□□□□□ -2.7
SHMT2P34897 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.82□□□□□ -2.7
SHMT2P34897 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.82□□□□□ -2.7
SHMT2P34897 AL603908.1-201ENST00000406098 201 ntBASIC-1.82□□□□□ -2.7
SHMT2P34897 MIR4511-201ENST00000582784 87 ntBASIC-1.82□□□□□ -2.7
SHMT2P34897 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.83□□□□□ -2.7
SHMT2P34897 RNU6-742P-201ENST00000365289 107 ntBASIC-1.83□□□□□ -2.7
SHMT2P34897 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.83□□□□□ -2.7
SHMT2P34897 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.83□□□□□ -2.7
SHMT2P34897 SNORD30.1-201ENST00000391309 70 ntBASIC-1.83□□□□□ -2.7
SHMT2P34897 MIR3139-201ENST00000579145 76 ntBASIC-1.83□□□□□ -2.7
SHMT2P34897 MIR466-201ENST00000580653 84 ntBASIC-1.83□□□□□ -2.7
SHMT2P34897 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.83□□□□□ -2.7
SHMT2P34897 RNU7-119P-201ENST00000459279 63 ntBASIC-1.84□□□□□ -2.7
SHMT2P34897 RNU6-419P-201ENST00000517030 63 ntBASIC-1.84□□□□□ -2.7
SHMT2P34897 RNU6-590P-201ENST00000365039 107 ntBASIC-1.85□□□□□ -2.71
SHMT2P34897 U6.111-201ENST00000636093 83 ntBASIC-1.85□□□□□ -2.71
SHMT2P34897 MIR3938-201ENST00000582157 103 ntBASIC-1.86□□□□□ -2.71
SHMT2P34897 MIR379-201ENST00000362218 67 ntBASIC-1.87□□□□□ -2.71
SHMT2P34897 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.87□□□□□ -2.71
SHMT2P34897 RNU6-300P-201ENST00000459080 104 ntBASIC-1.87□□□□□ -2.71
SHMT2P34897 RNU6-940P-201ENST00000363433 104 ntBASIC-1.88□□□□□ -2.71
SHMT2P34897 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.88□□□□□ -2.71
SHMT2P34897 RNU6-141P-201ENST00000410499 105 ntBASIC-1.88□□□□□ -2.71
SHMT2P34897 AC103706.3-201ENST00000636297 85 ntBASIC-1.88□□□□□ -2.71
SHMT2P34897 SNORD45.2-201ENST00000363552 72 ntBASIC-1.89□□□□□ -2.71
SHMT2P34897 RNU6-573P-201ENST00000383938 106 ntBASIC-1.89□□□□□ -2.71
SHMT2P34897 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.89□□□□□ -2.71
SHMT2P34897 RNU6-857P-201ENST00000515893 110 ntBASIC-1.89□□□□□ -2.71
SHMT2P34897 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.89□□□□□ -2.71
SHMT2P34897 MIR1255A-201ENST00000408338 113 ntBASIC-1.9□□□□□ -2.71
SHMT2P34897 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.91□□□□□ -2.72
SHMT2P34897 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.91□□□□□ -2.72
SHMT2P34897 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.91□□□□□ -2.72
SHMT2P34897 RNU6-279P-201ENST00000391297 101 ntBASIC-1.91□□□□□ -2.72
SHMT2P34897 MIR1207-201ENST00000408249 87 ntBASIC-1.91□□□□□ -2.72
SHMT2P34897 RNU6-539P-201ENST00000516665 103 ntBASIC-1.91□□□□□ -2.72
SHMT2P34897 MIR4723-201ENST00000585070 81 ntBASIC-1.91□□□□□ -2.72
SHMT2P34897 AC110620.1-201ENST00000416042 228 ntBASIC-1.92□□□□□ -2.72
SHMT2P34897 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.92□□□□□ -2.72
SHMT2P34897 MIR3202-2-201ENST00000635980 79 ntBASIC-1.92□□□□□ -2.72
SHMT2P34897 U2.22-201ENST00000636441 106 ntBASIC-1.92□□□□□ -2.72
SHMT2P34897 SNORD73B-201ENST00000364394 72 ntBASIC-1.93□□□□□ -2.72
SHMT2P34897 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.93□□□□□ -2.72
SHMT2P34897 MT-TM-201ENST00000387377 68 ntBASIC-1.93□□□□□ -2.72
SHMT2P34897 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.93□□□□□ -2.72
SHMT2P34897 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.93□□□□□ -2.72
SHMT2P34897 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.93□□□□□ -2.72
SHMT2P34897 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.94□□□□□ -2.72
SHMT2P34897 RNU6-800P-201ENST00000384473 103 ntBASIC-1.94□□□□□ -2.72
SHMT2P34897 RNU6-871P-201ENST00000516122 100 ntBASIC-1.94□□□□□ -2.72
SHMT2P34897 RNU6-176P-201ENST00000517196 105 ntBASIC-1.94□□□□□ -2.72
SHMT2P34897 MIR1254-1-201ENST00000408257 97 ntBASIC-1.95□□□□□ -2.72
SHMT2P34897 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.96□□□□□ -2.72
SHMT2P34897 MIR496-201ENST00000385226 102 ntBASIC-1.96□□□□□ -2.72
SHMT2P34897 RNU6-446P-201ENST00000362827 106 ntBASIC-1.97□□□□□ -2.72
SHMT2P34897 RNY4P29-201ENST00000410801 97 ntBASIC-1.97□□□□□ -2.72
SHMT2P34897 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.98□□□□□ -2.73
SHMT2P34897 MIR548X-201ENST00000580069 75 ntBASIC-1.98□□□□□ -2.73
SHMT2P34897 RNY4P9-201ENST00000363194 97 ntBASIC-1.99□□□□□ -2.73
SHMT2P34897 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.99□□□□□ -2.73
SHMT2P34897 RNA5SP225-201ENST00000410874 135 ntBASIC-1.99□□□□□ -2.73
SHMT2P34897 Y_RNA.519-201ENST00000384553 102 ntBASIC-2□□□□□ -2.73
SHMT2P34897 Y_RNA.565-201ENST00000384719 101 ntBASIC-2□□□□□ -2.73
SHMT2P34897 Y_RNA.722-201ENST00000517279 114 ntBASIC-2□□□□□ -2.73
SHMT2P34897 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.01□□□□□ -2.73
SHMT2P34897 RNU6-119P-201ENST00000364882 107 ntBASIC-2.02□□□□□ -2.73
SHMT2P34897 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.03□□□□□ -2.73
SHMT2P34897 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.03□□□□□ -2.73
SHMT2P34897 SNORD78.1-201ENST00000390866 65 ntBASIC-2.04□□□□□ -2.74
SHMT2P34897 RNA5SP170-201ENST00000517150 101 ntBASIC-2.04□□□□□ -2.74
SHMT2P34897 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.04□□□□□ -2.74
SHMT2P34897 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.05□□□□□ -2.74
SHMT2P34897 SNORA26.2-201ENST00000390922 122 ntBASIC-2.05□□□□□ -2.74
SHMT2P34897 RNU6-345P-201ENST00000517001 107 ntBASIC-2.05□□□□□ -2.74
SHMT2P34897 SNORD113-4-201ENST00000364802 75 ntBASIC-2.06□□□□□ -2.74
SHMT2P34897 Y_RNA.382-201ENST00000365672 114 ntBASIC-2.07□□□□□ -2.74
SHMT2P34897 MIR4679-1-201ENST00000637619 75 ntBASIC-2.07□□□□□ -2.74
SHMT2P34897 Y_RNA.43-201ENST00000362670 111 ntBASIC-2.08□□□□□ -2.74
SHMT2P34897 RNU6-471P-201ENST00000383944 106 ntBASIC-2.08□□□□□ -2.74
SHMT2P34897 MIR548H4-201ENST00000408689 111 ntBASIC-2.08□□□□□ -2.74
SHMT2P34897 RNU6-776P-201ENST00000364403 104 ntBASIC-2.09□□□□□ -2.74
SHMT2P34897 RNU6-1022P-201ENST00000365049 104 ntBASIC-2.09□□□□□ -2.74
SHMT2P34897 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-2.09□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 176.2 ms