Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.74□□□□□ -2.53
HOXD3P31249 MIR664B-201ENST00000626756 61 ntBASIC-0.74□□□□□ -2.53
HOXD3P31249 RNU6-247P-201ENST00000362636 107 ntBASIC-0.75□□□□□ -2.53
HOXD3P31249 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.75□□□□□ -2.53
HOXD3P31249 Y_RNA.211-201ENST00000364164 101 ntBASIC-0.75□□□□□ -2.53
HOXD3P31249 Y_RNA.223-201ENST00000364290 113 ntBASIC-0.75□□□□□ -2.53
HOXD3P31249 RNY4P7-201ENST00000364600 96 ntBASIC-0.75□□□□□ -2.53
HOXD3P31249 RNU6-608P-201ENST00000383927 104 ntBASIC-0.75□□□□□ -2.53
HOXD3P31249 RNU6-520P-201ENST00000384717 104 ntBASIC-0.75□□□□□ -2.53
HOXD3P31249 RNU6-980P-201ENST00000516925 103 ntBASIC-0.75□□□□□ -2.53
HOXD3P31249 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.76□□□□□ -2.53
HOXD3P31249 Y_RNA.175-201ENST00000363794 111 ntBASIC-0.76□□□□□ -2.53
HOXD3P31249 Y_RNA.225-201ENST00000364326 97 ntBASIC-0.76□□□□□ -2.53
HOXD3P31249 SNORD63.2-201ENST00000516303 64 ntBASIC-0.76□□□□□ -2.53
HOXD3P31249 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.77□□□□□ -2.53
HOXD3P31249 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.77□□□□□ -2.53
HOXD3P31249 RNU6-118P-201ENST00000516552 102 ntBASIC-0.77□□□□□ -2.53
HOXD3P31249 RNU7-160P-201ENST00000516660 62 ntBASIC-0.77□□□□□ -2.53
HOXD3P31249 Y_RNA.139-201ENST00000363464 102 ntBASIC-0.78□□□□□ -2.53
HOXD3P31249 RNU6-829P-201ENST00000363700 112 ntBASIC-0.78□□□□□ -2.53
HOXD3P31249 Y_RNA.403-201ENST00000383977 101 ntBASIC-0.78□□□□□ -2.53
HOXD3P31249 Y_RNA.449-201ENST00000384187 102 ntBASIC-0.78□□□□□ -2.53
HOXD3P31249 MIR496-201ENST00000385226 102 ntBASIC-0.78□□□□□ -2.53
HOXD3P31249 RNU4-88P-201ENST00000411220 86 ntBASIC-0.78□□□□□ -2.53
HOXD3P31249 MIR3139-201ENST00000579145 76 ntBASIC-0.78□□□□□ -2.53
HOXD3P31249 RNA5SP405-201ENST00000363059 114 ntBASIC-0.79□□□□□ -2.54
HOXD3P31249 RNU6-563P-201ENST00000364872 108 ntBASIC-0.79□□□□□ -2.54
HOXD3P31249 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.79□□□□□ -2.54
HOXD3P31249 RNU6-400P-201ENST00000391173 106 ntBASIC-0.79□□□□□ -2.54
HOXD3P31249 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.79□□□□□ -2.54
HOXD3P31249 MIR3123-201ENST00000583417 75 ntBASIC-0.79□□□□□ -2.54
HOXD3P31249 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.8□□□□□ -2.54
HOXD3P31249 RNU6-695P-201ENST00000391157 104 ntBASIC-0.8□□□□□ -2.54
HOXD3P31249 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-0.8□□□□□ -2.54
HOXD3P31249 MIR548AM-201ENST00000584298 74 ntBASIC-0.8□□□□□ -2.54
HOXD3P31249 SNORD113-4-201ENST00000364802 75 ntBASIC-0.81□□□□□ -2.54
HOXD3P31249 AC018880.2-201ENST00000414265 201 ntBASIC-0.81□□□□□ -2.54
HOXD3P31249 RNU6-1206P-201ENST00000516339 103 ntBASIC-0.82□□□□□ -2.54
HOXD3P31249 RNU6-1247P-201ENST00000516622 98 ntBASIC-0.82□□□□□ -2.54
HOXD3P31249 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.82□□□□□ -2.54
HOXD3P31249 MIR548W-201ENST00000581970 74 ntBASIC-0.82□□□□□ -2.54
HOXD3P31249 RNU6-119P-201ENST00000364882 107 ntBASIC-0.83□□□□□ -2.54
HOXD3P31249 RNU6-499P-201ENST00000365615 107 ntBASIC-0.83□□□□□ -2.54
HOXD3P31249 RNU6-841P-201ENST00000383872 107 ntBASIC-0.83□□□□□ -2.54
HOXD3P31249 RNU6-828P-201ENST00000364876 107 ntBASIC-0.84□□□□□ -2.54
HOXD3P31249 MT-TM-201ENST00000387377 68 ntBASIC-0.84□□□□□ -2.54
HOXD3P31249 Y_RNA.591-201ENST00000410228 104 ntBASIC-0.84□□□□□ -2.54
HOXD3P31249 AC120024.2-201ENST00000576526 175 ntBASIC-0.84□□□□□ -2.54
HOXD3P31249 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-0.84□□□□□ -2.54
HOXD3P31249 AC079150.2-201ENST00000443733 78 ntBASIC-0.85□□□□□ -2.55
HOXD3P31249 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.85□□□□□ -2.55
HOXD3P31249 snoU13.10-201ENST00000459301 103 ntBASIC-0.86□□□□□ -2.55
HOXD3P31249 MIR4748-201ENST00000578076 82 ntBASIC-0.86□□□□□ -2.55
HOXD3P31249 AC013734.1-201ENST00000619329 111 ntBASIC-0.86□□□□□ -2.55
HOXD3P31249 RNA5SP93-201ENST00000362525 114 ntBASIC-0.87□□□□□ -2.55
HOXD3P31249 RNU6-194P-201ENST00000363862 105 ntBASIC-0.87□□□□□ -2.55
HOXD3P31249 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.87□□□□□ -2.55
HOXD3P31249 TARS-215ENST00000626210 201 ntTSL 5 BASIC-0.87□□□□□ -2.55
HOXD3P31249 SNORA27.2-201ENST00000363365 126 ntBASIC-0.88□□□□□ -2.55
HOXD3P31249 MIR23C-201ENST00000579846 100 ntBASIC-0.88□□□□□ -2.55
HOXD3P31249 MIRLET7A2-201ENST00000362105 72 ntBASIC-0.89□□□□□ -2.55
HOXD3P31249 MIR581-201ENST00000384895 96 ntBASIC-0.89□□□□□ -2.55
HOXD3P31249 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-0.89□□□□□ -2.55
HOXD3P31249 RNU6-419P-201ENST00000517030 63 ntBASIC-0.9□□□□□ -2.55
HOXD3P31249 RNU6-1306P-201ENST00000365219 99 ntBASIC-0.91□□□□□ -2.56
HOXD3P31249 RNY4-201ENST00000516507 96 ntBASIC-0.91□□□□□ -2.56
HOXD3P31249 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-0.91□□□□□ -2.56
HOXD3P31249 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.91□□□□□ -2.56
HOXD3P31249 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.92□□□□□ -2.56
HOXD3P31249 Y_RNA.321-201ENST00000365149 102 ntBASIC-0.93□□□□□ -2.56
HOXD3P31249 RNU6-141P-201ENST00000410499 105 ntBASIC-0.93□□□□□ -2.56
HOXD3P31249 MIR548X-201ENST00000580069 75 ntBASIC-0.93□□□□□ -2.56
HOXD3P31249 U6.97-201ENST00000636904 101 ntBASIC-0.93□□□□□ -2.56
HOXD3P31249 RNY3P8-201ENST00000411366 126 ntBASIC-0.94□□□□□ -2.56
HOXD3P31249 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.94□□□□□ -2.56
HOXD3P31249 Y_RNA.421-201ENST00000384052 101 ntBASIC-0.95□□□□□ -2.56
HOXD3P31249 AL451105.1-201ENST00000450005 189 ntBASIC-0.95□□□□□ -2.56
HOXD3P31249 SNORD54-201ENST00000459159 67 ntBASIC-0.95□□□□□ -2.56
HOXD3P31249 FTX_4.1-201ENST00000616291 147 ntBASIC-0.95□□□□□ -2.56
HOXD3P31249 Y_RNA.397-201ENST00000383950 98 ntBASIC-0.96□□□□□ -2.56
HOXD3P31249 AC097484.2-201ENST00000509147 251 ntBASIC-0.96□□□□□ -2.56
HOXD3P31249 SNORD113-3-201ENST00000364830 72 ntBASIC-0.97□□□□□ -2.56
HOXD3P31249 RNU6-530P-201ENST00000391180 107 ntBASIC-0.98□□□□□ -2.57
HOXD3P31249 RNU6-68P-201ENST00000516576 104 ntBASIC-0.98□□□□□ -2.57
HOXD3P31249 Y_RNA.53-201ENST00000362765 102 ntBASIC-0.99□□□□□ -2.57
HOXD3P31249 Y_RNA.349-201ENST00000365406 102 ntBASIC-0.99□□□□□ -2.57
HOXD3P31249 Y_RNA.513-201ENST00000384522 100 ntBASIC-0.99□□□□□ -2.57
HOXD3P31249 Y_RNA.647-201ENST00000459194 112 ntBASIC-0.99□□□□□ -2.57
HOXD3P31249 Y_RNA.640-201ENST00000459296 112 ntBASIC-0.99□□□□□ -2.57
HOXD3P31249 RNU6-1191P-201ENST00000516799 107 ntBASIC-0.99□□□□□ -2.57
HOXD3P31249 Y_RNA.803-201ENST00000614432 112 ntBASIC-0.99□□□□□ -2.57
HOXD3P31249 Y_RNA.815-201ENST00000616655 112 ntBASIC-0.99□□□□□ -2.57
HOXD3P31249 Y_RNA.795-201ENST00000619475 112 ntBASIC-0.99□□□□□ -2.57
HOXD3P31249 Y_RNA.827-201ENST00000638104 112 ntBASIC-0.99□□□□□ -2.57
HOXD3P31249 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.01□□□□□ -2.57
HOXD3P31249 RNU6-230P-201ENST00000362457 104 ntBASIC-1.02□□□□□ -2.57
HOXD3P31249 SNORD45.2-201ENST00000363552 72 ntBASIC-1.02□□□□□ -2.57
HOXD3P31249 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.02□□□□□ -2.57
HOXD3P31249 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.02□□□□□ -2.57
HOXD3P31249 MIR5693-201ENST00000577722 73 ntBASIC-1.02□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms