Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU6-1206P-201ENST00000516339 103 ntBASIC-0.94□□□□□ -2.56
COL5A3P25940 Y_RNA.685-201ENST00000516532 108 ntBASIC-0.94□□□□□ -2.56
COL5A3P25940 RNU6-361P-201ENST00000364454 107 ntBASIC-0.95□□□□□ -2.56
COL5A3P25940 RNU6-828P-201ENST00000364876 107 ntBASIC-0.95□□□□□ -2.56
COL5A3P25940 RNA5SP225-201ENST00000410874 135 ntBASIC-0.95□□□□□ -2.56
COL5A3P25940 RNU6-983P-201ENST00000516004 103 ntBASIC-0.95□□□□□ -2.56
COL5A3P25940 MIR466-201ENST00000580653 84 ntBASIC-0.95□□□□□ -2.56
COL5A3P25940 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.95□□□□□ -2.56
COL5A3P25940 RNU6-471P-201ENST00000383944 106 ntBASIC-0.96□□□□□ -2.56
COL5A3P25940 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.96□□□□□ -2.56
COL5A3P25940 RNU6-1247P-201ENST00000516622 98 ntBASIC-0.96□□□□□ -2.56
COL5A3P25940 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.97□□□□□ -2.56
COL5A3P25940 SNORD18C-201ENST00000362704 69 ntBASIC-0.98□□□□□ -2.57
COL5A3P25940 RNU6-1296P-201ENST00000383879 107 ntBASIC-0.98□□□□□ -2.57
COL5A3P25940 SNORA17.4-201ENST00000391287 132 ntBASIC-0.98□□□□□ -2.57
COL5A3P25940 RNU6-122P-201ENST00000516818 107 ntBASIC-0.98□□□□□ -2.57
COL5A3P25940 RNU6-419P-201ENST00000517030 63 ntBASIC-0.98□□□□□ -2.57
COL5A3P25940 SNORA40.16-201ENST00000517238 121 ntBASIC-0.98□□□□□ -2.57
COL5A3P25940 U6.111-201ENST00000636093 83 ntBASIC-0.98□□□□□ -2.57
COL5A3P25940 RNU6-800P-201ENST00000384473 103 ntBASIC-0.98□□□□□ -2.57
COL5A3P25940 MIR202-201ENST00000362219 110 ntBASIC-0.99□□□□□ -2.57
COL5A3P25940 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.99□□□□□ -2.57
COL5A3P25940 RNU6-841P-201ENST00000383872 107 ntBASIC-0.99□□□□□ -2.57
COL5A3P25940 RNU6-530P-201ENST00000391180 107 ntBASIC-0.99□□□□□ -2.57
COL5A3P25940 MIR548N-201ENST00000408742 75 ntBASIC-0.99□□□□□ -2.57
COL5A3P25940 MIR3123-201ENST00000583417 75 ntBASIC-0.99□□□□□ -2.57
COL5A3P25940 MIR548AM-201ENST00000584298 74 ntBASIC-0.99□□□□□ -2.57
COL5A3P25940 Y_RNA.223-201ENST00000364290 113 ntBASIC-1□□□□□ -2.57
COL5A3P25940 Y_RNA.449-201ENST00000384187 102 ntBASIC-1□□□□□ -2.57
COL5A3P25940 MIR581-201ENST00000384895 96 ntBASIC-1□□□□□ -2.57
COL5A3P25940 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.01□□□□□ -2.57
COL5A3P25940 RNA5SP86-201ENST00000390869 98 ntBASIC-1.01□□□□□ -2.57
COL5A3P25940 MIR379-201ENST00000362218 67 ntBASIC-1.01□□□□□ -2.57
COL5A3P25940 SNORD18.1-201ENST00000363807 70 ntBASIC-1.01□□□□□ -2.57
COL5A3P25940 MIR548X-201ENST00000580069 75 ntBASIC-1.01□□□□□ -2.57
COL5A3P25940 MIR548W-201ENST00000581970 74 ntBASIC-1.01□□□□□ -2.57
COL5A3P25940 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.02□□□□□ -2.57
COL5A3P25940 snoU13.10-201ENST00000459301 103 ntBASIC-1.02□□□□□ -2.57
COL5A3P25940 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.03□□□□□ -2.57
COL5A3P25940 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.03□□□□□ -2.57
COL5A3P25940 MIR487B-201ENST00000385021 84 ntBASIC-1.03□□□□□ -2.58
COL5A3P25940 AL451105.1-201ENST00000450005 189 ntBASIC-1.03□□□□□ -2.58
COL5A3P25940 RNU6-176P-201ENST00000517196 105 ntBASIC-1.03□□□□□ -2.58
COL5A3P25940 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.04□□□□□ -2.58
COL5A3P25940 RNU6-912P-201ENST00000363800 104 ntBASIC-1.04□□□□□ -2.58
COL5A3P25940 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.06□□□□□ -2.58
COL5A3P25940 AC114801.3-201ENST00000510231 177 ntBASIC-1.06□□□□□ -2.58
COL5A3P25940 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.06□□□□□ -2.58
COL5A3P25940 RNU4-88P-201ENST00000411220 86 ntBASIC-1.06□□□□□ -2.58
COL5A3P25940 RNU6-300P-201ENST00000459080 104 ntBASIC-1.06□□□□□ -2.58
COL5A3P25940 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.06□□□□□ -2.58
COL5A3P25940 RNU6-742P-201ENST00000365289 107 ntBASIC-1.07□□□□□ -2.58
COL5A3P25940 AC108019.1-201ENST00000512540 175 ntBASIC-1.07□□□□□ -2.58
COL5A3P25940 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.08□□□□□ -2.58
COL5A3P25940 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.09□□□□□ -2.58
COL5A3P25940 MIR4426-201ENST00000640330 63 ntBASIC-1.09□□□□□ -2.58
COL5A3P25940 RNU6-590P-201ENST00000365039 107 ntBASIC-1.09□□□□□ -2.58
COL5A3P25940 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.09□□□□□ -2.58
COL5A3P25940 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.1□□□□□ -2.59
COL5A3P25940 SNORD54-201ENST00000459159 67 ntBASIC-1.1□□□□□ -2.59
COL5A3P25940 MIR4756-201ENST00000577874 78 ntBASIC-1.1□□□□□ -2.59
COL5A3P25940 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.1□□□□□ -2.59
COL5A3P25940 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.1□□□□□ -2.59
COL5A3P25940 MIR664B-201ENST00000626756 61 ntBASIC-1.11□□□□□ -2.59
COL5A3P25940 RNU6-446P-201ENST00000362827 106 ntBASIC-1.12□□□□□ -2.59
COL5A3P25940 RNU6-980P-201ENST00000516925 103 ntBASIC-1.12□□□□□ -2.59
COL5A3P25940 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.12□□□□□ -2.59
COL5A3P25940 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.12□□□□□ -2.59
COL5A3P25940 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.12□□□□□ -2.59
COL5A3P25940 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.13□□□□□ -2.59
COL5A3P25940 RNU4-33P-201ENST00000364316 85 ntBASIC-1.13□□□□□ -2.59
COL5A3P25940 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.13□□□□□ -2.59
COL5A3P25940 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.13□□□□□ -2.59
COL5A3P25940 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.13□□□□□ -2.59
COL5A3P25940 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.14□□□□□ -2.59
COL5A3P25940 SNORA72.7-201ENST00000516349 94 ntBASIC-1.14□□□□□ -2.59
COL5A3P25940 RNU6-68P-201ENST00000516576 104 ntBASIC-1.14□□□□□ -2.59
COL5A3P25940 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.15□□□□□ -2.59
COL5A3P25940 MIR4317-201ENST00000637586 65 ntBASIC-1.15□□□□□ -2.59
COL5A3P25940 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.15□□□□□ -2.59
COL5A3P25940 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.15□□□□□ -2.59
COL5A3P25940 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.15□□□□□ -2.59
COL5A3P25940 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.15□□□□□ -2.59
COL5A3P25940 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.15□□□□□ -2.59
COL5A3P25940 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.15□□□□□ -2.59
COL5A3P25940 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.15□□□□□ -2.59
COL5A3P25940 AC097484.2-201ENST00000509147 251 ntBASIC-1.16□□□□□ -2.6
COL5A3P25940 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.16□□□□□ -2.6
COL5A3P25940 SNORD113-4-201ENST00000364802 75 ntBASIC-1.17□□□□□ -2.6
COL5A3P25940 AC125388.1-201ENST00000459631 156 ntBASIC-1.17□□□□□ -2.6
COL5A3P25940 RNU6-118P-201ENST00000516552 102 ntBASIC-1.17□□□□□ -2.6
COL5A3P25940 MIR3139-201ENST00000579145 76 ntBASIC-1.17□□□□□ -2.6
COL5A3P25940 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.18□□□□□ -2.6
COL5A3P25940 MIR633-201ENST00000384821 98 ntBASIC-1.18□□□□□ -2.6
COL5A3P25940 RNA5SP405-201ENST00000363059 114 ntBASIC-1.18□□□□□ -2.6
COL5A3P25940 RNU6-829P-201ENST00000363700 112 ntBASIC-1.18□□□□□ -2.6
COL5A3P25940 MIR4748-201ENST00000578076 82 ntBASIC-1.19□□□□□ -2.6
COL5A3P25940 FTX_4.1-201ENST00000616291 147 ntBASIC-1.2□□□□□ -2.6
COL5A3P25940 MIR548AL-201ENST00000578416 97 ntBASIC-1.2□□□□□ -2.6
COL5A3P25940 RNU6-194P-201ENST00000363862 105 ntBASIC-1.21□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 228.5 ms