Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.3□□□□□ -2.62
SMCHD1A6NHR9 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.3□□□□□ -2.62
SMCHD1A6NHR9 RNU6-788P-201ENST00000390967 104 ntBASIC-1.31□□□□□ -2.62
SMCHD1A6NHR9 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 MIR548AL-201ENST00000578416 97 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 MIR4441-201ENST00000582623 100 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 AC091912.2-201ENST00000624798 167 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 U6.97-201ENST00000636904 101 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 RNU6-446P-201ENST00000362827 106 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 MIR633-201ENST00000384821 98 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 AC013734.1-201ENST00000619329 111 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 MIR4426-201ENST00000640330 63 ntBASIC-1.33□□□□□ -2.62
SMCHD1A6NHR9 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.35□□□□□ -2.63
SMCHD1A6NHR9 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.36□□□□□ -2.63
SMCHD1A6NHR9 AL451105.1-201ENST00000450005 189 ntBASIC-1.36□□□□□ -2.63
SMCHD1A6NHR9 RNU6-614P-201ENST00000384369 107 ntBASIC-1.37□□□□□ -2.63
SMCHD1A6NHR9 U6.59-201ENST00000615686 107 ntBASIC-1.37□□□□□ -2.63
SMCHD1A6NHR9 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.37□□□□□ -2.63
SMCHD1A6NHR9 MIR202-201ENST00000362219 110 ntBASIC-1.38□□□□□ -2.63
SMCHD1A6NHR9 MIR6502-201ENST00000617296 76 ntBASIC-1.38□□□□□ -2.63
SMCHD1A6NHR9 RNU6-530P-201ENST00000391180 107 ntBASIC-1.39□□□□□ -2.63
SMCHD1A6NHR9 RNU6-980P-201ENST00000516925 103 ntBASIC-1.39□□□□□ -2.63
SMCHD1A6NHR9 RNU6-176P-201ENST00000517196 105 ntBASIC-1.39□□□□□ -2.63
SMCHD1A6NHR9 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.39□□□□□ -2.63
SMCHD1A6NHR9 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.4□□□□□ -2.63
SMCHD1A6NHR9 SNORD113-4-201ENST00000364802 75 ntBASIC-1.4□□□□□ -2.63
SMCHD1A6NHR9 RNA5SP180-201ENST00000516181 101 ntBASIC-1.4□□□□□ -2.63
SMCHD1A6NHR9 MIR4317-201ENST00000637586 65 ntBASIC-1.4□□□□□ -2.63
SMCHD1A6NHR9 MIR548H4-201ENST00000408689 111 ntBASIC-1.41□□□□□ -2.64
SMCHD1A6NHR9 RNU6-808P-201ENST00000391233 108 ntBASIC-1.42□□□□□ -2.64
SMCHD1A6NHR9 SNORA17.4-201ENST00000391287 132 ntBASIC-1.42□□□□□ -2.64
SMCHD1A6NHR9 RNU6-841P-201ENST00000383872 107 ntBASIC-1.43□□□□□ -2.64
SMCHD1A6NHR9 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.43□□□□□ -2.64
SMCHD1A6NHR9 MIR6874-201ENST00000635894 71 ntBASIC-1.43□□□□□ -2.64
SMCHD1A6NHR9 RNU6-300P-201ENST00000459080 104 ntBASIC-1.44□□□□□ -2.64
SMCHD1A6NHR9 MIR1246-201ENST00000636535 73 ntBASIC-1.44□□□□□ -2.64
SMCHD1A6NHR9 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.44□□□□□ -2.64
SMCHD1A6NHR9 MIR581-201ENST00000384895 96 ntBASIC-1.44□□□□□ -2.64
SMCHD1A6NHR9 MIR3123-201ENST00000583417 75 ntBASIC-1.44□□□□□ -2.64
SMCHD1A6NHR9 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.45□□□□□ -2.64
SMCHD1A6NHR9 RNU6-742P-201ENST00000365289 107 ntBASIC-1.47□□□□□ -2.65
SMCHD1A6NHR9 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.47□□□□□ -2.65
SMCHD1A6NHR9 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.48□□□□□ -2.65
SMCHD1A6NHR9 snoU13.10-201ENST00000459301 103 ntBASIC-1.49□□□□□ -2.65
SMCHD1A6NHR9 RNU6-68P-201ENST00000516576 104 ntBASIC-1.49□□□□□ -2.65
SMCHD1A6NHR9 U4.2-201ENST00000618561 85 ntBASIC-1.49□□□□□ -2.65
SMCHD1A6NHR9 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.5□□□□□ -2.65
SMCHD1A6NHR9 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.5□□□□□ -2.65
SMCHD1A6NHR9 MTND4LP19-201ENST00000403051 166 ntBASIC-1.5□□□□□ -2.65
SMCHD1A6NHR9 MIR664B-201ENST00000626756 61 ntBASIC-1.5□□□□□ -2.65
SMCHD1A6NHR9 MIR548H1-201ENST00000408610 102 ntBASIC-1.51□□□□□ -2.65
SMCHD1A6NHR9 RNU6-119P-201ENST00000364882 107 ntBASIC-1.52□□□□□ -2.65
SMCHD1A6NHR9 MIR487B-201ENST00000385021 84 ntBASIC-1.53□□□□□ -2.65
SMCHD1A6NHR9 MIR1207-201ENST00000408249 87 ntBASIC-1.53□□□□□ -2.65
SMCHD1A6NHR9 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.54□□□□□ -2.66
SMCHD1A6NHR9 MIR548W-201ENST00000581970 74 ntBASIC-1.54□□□□□ -2.66
SMCHD1A6NHR9 MIR548AM-201ENST00000584298 74 ntBASIC-1.54□□□□□ -2.66
SMCHD1A6NHR9 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.55□□□□□ -2.66
SMCHD1A6NHR9 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.55□□□□□ -2.66
SMCHD1A6NHR9 RNU6-912P-201ENST00000363800 104 ntBASIC-1.56□□□□□ -2.66
SMCHD1A6NHR9 RNA5SP86-201ENST00000390869 98 ntBASIC-1.57□□□□□ -2.66
SMCHD1A6NHR9 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.57□□□□□ -2.66
SMCHD1A6NHR9 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.58□□□□□ -2.66
SMCHD1A6NHR9 AC108019.1-201ENST00000512540 175 ntBASIC-1.59□□□□□ -2.66
SMCHD1A6NHR9 RNU6-983P-201ENST00000516004 103 ntBASIC-1.59□□□□□ -2.66
SMCHD1A6NHR9 SNORD18.1-201ENST00000363807 70 ntBASIC-1.6□□□□□ -2.67
SMCHD1A6NHR9 MIR4756-201ENST00000577874 78 ntBASIC-1.6□□□□□ -2.67
SMCHD1A6NHR9 RNY4P27-201ENST00000363341 96 ntBASIC-1.62□□□□□ -2.67
SMCHD1A6NHR9 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.63□□□□□ -2.67
SMCHD1A6NHR9 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.63□□□□□ -2.67
SMCHD1A6NHR9 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.63□□□□□ -2.67
SMCHD1A6NHR9 MIR545-201ENST00000385085 106 ntBASIC-1.64□□□□□ -2.67
SMCHD1A6NHR9 RNU4-88P-201ENST00000411220 86 ntBASIC-1.65□□□□□ -2.67
SMCHD1A6NHR9 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.65□□□□□ -2.67
SMCHD1A6NHR9 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.65□□□□□ -2.67
SMCHD1A6NHR9 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.66□□□□□ -2.67
SMCHD1A6NHR9 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.66□□□□□ -2.67
SMCHD1A6NHR9 AC079150.2-201ENST00000443733 78 ntBASIC-1.66□□□□□ -2.67
SMCHD1A6NHR9 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.67□□□□□ -2.68
SMCHD1A6NHR9 RNU6-936P-201ENST00000384005 107 ntBASIC-1.68□□□□□ -2.68
SMCHD1A6NHR9 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.68□□□□□ -2.68
SMCHD1A6NHR9 RNU6-987P-201ENST00000384759 104 ntBASIC-1.69□□□□□ -2.68
SMCHD1A6NHR9 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.69□□□□□ -2.68
SMCHD1A6NHR9 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.7□□□□□ -2.68
SMCHD1A6NHR9 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.71□□□□□ -2.68
SMCHD1A6NHR9 RNA5SP405-201ENST00000363059 114 ntBASIC-1.71□□□□□ -2.68
SMCHD1A6NHR9 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.71□□□□□ -2.68
SMCHD1A6NHR9 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.72□□□□□ -2.68
SMCHD1A6NHR9 SNORD113-3-201ENST00000364830 72 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 RNA5SP224-201ENST00000365069 126 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 RNU6-822P-201ENST00000362707 106 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 RNU6-753P-201ENST00000363926 107 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 RNU6-345P-201ENST00000517001 107 ntBASIC-1.73□□□□□ -2.69
SMCHD1A6NHR9 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.75□□□□□ -2.69
SMCHD1A6NHR9 RNU6-838P-201ENST00000363399 108 ntBASIC-1.77□□□□□ -2.69
SMCHD1A6NHR9 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.77□□□□□ -2.69
SMCHD1A6NHR9 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.78□□□□□ -2.69
SMCHD1A6NHR9 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.78□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 7.6 ms