Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU6-627P-201ENST00000364032 102 ntBASIC-6.02□□□□□ -3.37
CCDC88BA6NC98 RNU6-804P-201ENST00000384286 107 ntBASIC-6.02□□□□□ -3.37
CCDC88BA6NC98 AL117187.1-201ENST00000555482 181 ntBASIC-6.02□□□□□ -3.37
CCDC88BA6NC98 Y_RNA.350-201ENST00000365409 98 ntBASIC-6.03□□□□□ -3.38
CCDC88BA6NC98 RNU6-663P-201ENST00000391105 106 ntBASIC-6.03□□□□□ -3.38
CCDC88BA6NC98 RNU6-1008P-201ENST00000384160 104 ntBASIC-6.04□□□□□ -3.38
CCDC88BA6NC98 Y_RNA.297-201ENST00000364950 91 ntBASIC-6.05□□□□□ -3.38
CCDC88BA6NC98 MIR548AL-201ENST00000578416 97 ntBASIC-6.07□□□□□ -3.38
CCDC88BA6NC98 RNU7-120P-201ENST00000459334 63 ntBASIC-6.08□□□□□ -3.38
CCDC88BA6NC98 RNU6-257P-201ENST00000410238 98 ntBASIC-6.09□□□□□ -3.38
CCDC88BA6NC98 AC134503.1-201ENST00000633048 54 ntBASIC-6.09□□□□□ -3.38
CCDC88BA6NC98 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-6.09□□□□□ -3.38
CCDC88BA6NC98 Y_RNA.316-201ENST00000365118 111 ntBASIC-6.09□□□□□ -3.38
CCDC88BA6NC98 Y_RNA.788-201ENST00000622394 112 ntBASIC-6.09□□□□□ -3.38
CCDC88BA6NC98 SNORA25.4-201ENST00000363666 124 ntBASIC-6.11□□□□□ -3.39
CCDC88BA6NC98 RNU6-1023P-201ENST00000516137 106 ntBASIC-6.11□□□□□ -3.39
CCDC88BA6NC98 MALAT1.1-201ENST00000618249 95 ntBASIC-6.11□□□□□ -3.39
CCDC88BA6NC98 RNU6-1204P-201ENST00000363948 107 ntBASIC-6.12□□□□□ -3.39
CCDC88BA6NC98 MTND4P29-201ENST00000503122 1372 ntBASIC-6.12□□□□□ -3.39
CCDC88BA6NC98 MIR3171-201ENST00000584270 74 ntBASIC-6.13□□□□□ -3.39
CCDC88BA6NC98 RNU6-675P-201ENST00000384236 104 ntBASIC-6.14□□□□□ -3.39
CCDC88BA6NC98 Y_RNA.273-201ENST00000364703 102 ntBASIC-6.15□□□□□ -3.39
CCDC88BA6NC98 RNU6-1024P-201ENST00000384199 107 ntBASIC-6.15□□□□□ -3.39
CCDC88BA6NC98 Y_RNA.460-201ENST00000384255 102 ntBASIC-6.15□□□□□ -3.39
CCDC88BA6NC98 Y_RNA.619-201ENST00000410951 90 ntBASIC-6.15□□□□□ -3.39
CCDC88BA6NC98 RNU6-875P-201ENST00000516488 106 ntBASIC-6.16□□□□□ -3.4
CCDC88BA6NC98 Y_RNA.343-201ENST00000365354 112 ntBASIC-6.21□□□□□ -3.4
CCDC88BA6NC98 snoMBII-202.2-201ENST00000517263 86 ntBASIC-6.21□□□□□ -3.4
CCDC88BA6NC98 MIR4511-201ENST00000582784 87 ntBASIC-6.22□□□□□ -3.4
CCDC88BA6NC98 RNU6-808P-201ENST00000391233 108 ntBASIC-6.22□□□□□ -3.41
CCDC88BA6NC98 SNORD30.1-201ENST00000391309 70 ntBASIC-6.22□□□□□ -3.41
CCDC88BA6NC98 MTND5P41-201ENST00000517498 206 ntBASIC-6.22□□□□□ -3.41
CCDC88BA6NC98 IGLL4P-201ENST00000614590 133 ntBASIC-6.22□□□□□ -3.41
CCDC88BA6NC98 MIR1245B-201ENST00000636115 69 ntBASIC-6.22□□□□□ -3.41
CCDC88BA6NC98 MIR4712-201ENST00000583750 82 ntBASIC-6.23□□□□□ -3.41
CCDC88BA6NC98 SNORA40.13-201ENST00000516379 120 ntBASIC-6.25□□□□□ -3.41
CCDC88BA6NC98 AC103706.3-201ENST00000636297 85 ntBASIC-6.26□□□□□ -3.41
CCDC88BA6NC98 RNU6-634P-201ENST00000459134 106 ntBASIC-6.27□□□□□ -3.41
CCDC88BA6NC98 RNU6-1312P-201ENST00000362425 108 ntBASIC-6.28□□□□□ -3.41
CCDC88BA6NC98 Y_RNA.138-201ENST00000363462 102 ntBASIC-6.28□□□□□ -3.41
CCDC88BA6NC98 AC090425.1-201ENST00000610007 140 ntBASIC-6.29□□□□□ -3.42
CCDC88BA6NC98 AC062037.2-201ENST00000610137 73 ntBASIC-6.29□□□□□ -3.42
CCDC88BA6NC98 Y_RNA.73-201ENST00000362910 113 ntBASIC-6.3□□□□□ -3.42
CCDC88BA6NC98 RNU6-844P-201ENST00000517175 102 ntBASIC-6.31□□□□□ -3.42
CCDC88BA6NC98 MIR5588-201ENST00000581890 63 ntBASIC-6.33□□□□□ -3.42
CCDC88BA6NC98 RNU4-33P-201ENST00000364316 85 ntBASIC-6.34□□□□□ -3.43
CCDC88BA6NC98 RNU6-209P-201ENST00000384118 107 ntBASIC-6.34□□□□□ -3.43
CCDC88BA6NC98 RNU6-959P-201ENST00000384671 107 ntBASIC-6.35□□□□□ -3.43
CCDC88BA6NC98 Y_RNA.94-201ENST00000363068 106 ntBASIC-6.37□□□□□ -3.43
CCDC88BA6NC98 MIR548F4-201ENST00000408515 105 ntBASIC-6.38□□□□□ -3.43
CCDC88BA6NC98 U7.4-201ENST00000614961 63 ntBASIC-6.38□□□□□ -3.43
CCDC88BA6NC98 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-6.39□□□□□ -3.43
CCDC88BA6NC98 Y_RNA.149-201ENST00000363558 117 ntBASIC-6.4□□□□□ -3.43
CCDC88BA6NC98 RNU6-620P-201ENST00000384017 96 ntBASIC-6.42□□□□□ -3.44
CCDC88BA6NC98 RNU6-59P-201ENST00000384787 107 ntBASIC-6.43□□□□□ -3.44
CCDC88BA6NC98 MTND5P20-201ENST00000448677 143 ntBASIC-6.43□□□□□ -3.44
CCDC88BA6NC98 AL031737.1-201ENST00000450125 223 ntBASIC-6.43□□□□□ -3.44
CCDC88BA6NC98 MIR4679-1-201ENST00000637619 75 ntBASIC-6.43□□□□□ -3.44
CCDC88BA6NC98 RNU6-623P-201ENST00000363143 105 ntBASIC-6.44□□□□□ -3.44
CCDC88BA6NC98 MIR450A1-201ENST00000362262 91 ntBASIC-6.45□□□□□ -3.44
CCDC88BA6NC98 RNU7-171P-201ENST00000459581 62 ntBASIC-6.46□□□□□ -3.44
CCDC88BA6NC98 MIR488-201ENST00000365739 83 ntBASIC-6.47□□□□□ -3.44
CCDC88BA6NC98 AC110620.1-201ENST00000416042 228 ntBASIC-6.47□□□□□ -3.45
CCDC88BA6NC98 SNORD116-14-201ENST00000383894 92 ntBASIC-6.48□□□□□ -3.45
CCDC88BA6NC98 SNORD116-17-201ENST00000383929 92 ntBASIC-6.48□□□□□ -3.45
CCDC88BA6NC98 SNORD116-15-201ENST00000384445 92 ntBASIC-6.48□□□□□ -3.45
CCDC88BA6NC98 SNORD116-19-201ENST00000384729 92 ntBASIC-6.48□□□□□ -3.45
CCDC88BA6NC98 MT-TD-201ENST00000387419 68 ntBASIC-6.48□□□□□ -3.45
CCDC88BA6NC98 Y_RNA.593-201ENST00000410292 98 ntBASIC-6.51□□□□□ -3.45
CCDC88BA6NC98 AL353621.2-201ENST00000605340 133 ntBASIC-6.51□□□□□ -3.45
CCDC88BA6NC98 U6.111-201ENST00000636093 83 ntBASIC-6.52□□□□□ -3.45
CCDC88BA6NC98 SNORD113-1-201ENST00000365321 69 ntBASIC-6.53□□□□□ -3.45
CCDC88BA6NC98 RNU7-200P-201ENST00000516105 62 ntBASIC-6.53□□□□□ -3.46
CCDC88BA6NC98 RNU6-200P-201ENST00000364743 107 ntBASIC-6.54□□□□□ -3.46
CCDC88BA6NC98 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-6.56□□□□□ -3.46
CCDC88BA6NC98 MIR1302-3-201ENST00000408128 138 ntBASIC-6.57□□□□□ -3.46
CCDC88BA6NC98 MIR494-201ENST00000349529 81 ntBASIC-6.58□□□□□ -3.46
CCDC88BA6NC98 RNU6-446P-201ENST00000362827 106 ntBASIC-6.59□□□□□ -3.46
CCDC88BA6NC98 Y_RNA.545-201ENST00000384652 105 ntBASIC-6.59□□□□□ -3.46
CCDC88BA6NC98 AC114801.3-201ENST00000510231 177 ntBASIC-6.59□□□□□ -3.46
CCDC88BA6NC98 RNU6-539P-201ENST00000516665 103 ntBASIC-6.59□□□□□ -3.46
CCDC88BA6NC98 RNU6-871P-201ENST00000516122 100 ntBASIC-6.6□□□□□ -3.47
CCDC88BA6NC98 RNU6-346P-201ENST00000516288 111 ntBASIC-6.6□□□□□ -3.47
CCDC88BA6NC98 RNU6-986P-201ENST00000363133 102 ntBASIC-6.6□□□□□ -3.47
CCDC88BA6NC98 RNU6-589P-201ENST00000516485 107 ntBASIC-6.61□□□□□ -3.47
CCDC88BA6NC98 MIR4760-201ENST00000585040 80 ntBASIC-6.61□□□□□ -3.47
CCDC88BA6NC98 Y_RNA.422-201ENST00000384054 114 ntBASIC-6.62□□□□□ -3.47
CCDC88BA6NC98 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-6.63□□□□□ -3.47
CCDC88BA6NC98 RNU6-838P-201ENST00000363399 108 ntBASIC-6.65□□□□□ -3.47
CCDC88BA6NC98 AC008737.2-201ENST00000599446 118 ntBASIC-6.65□□□□□ -3.47
CCDC88BA6NC98 Y_RNA.261-201ENST00000364631 102 ntBASIC-6.68□□□□□ -3.48
CCDC88BA6NC98 MIR568-201ENST00000385036 95 ntBASIC-6.69□□□□□ -3.48
CCDC88BA6NC98 RNU6-242P-201ENST00000384359 107 ntBASIC-6.7□□□□□ -3.48
CCDC88BA6NC98 Y_RNA.489-201ENST00000384410 101 ntBASIC-6.71□□□□□ -3.48
CCDC88BA6NC98 Y_RNA.702-201ENST00000516843 96 ntBASIC-6.72□□□□□ -3.48
CCDC88BA6NC98 AC044792.1-201ENST00000593294 196 ntBASIC-6.72□□□□□ -3.48
CCDC88BA6NC98 SNORD113-4-201ENST00000364802 75 ntBASIC-6.73□□□□□ -3.49
CCDC88BA6NC98 Y_RNA.379-201ENST00000365653 102 ntBASIC-6.73□□□□□ -3.49
CCDC88BA6NC98 MTCYBP9-201ENST00000431021 303 ntBASIC-6.73□□□□□ -3.49
CCDC88BA6NC98 MIR4666B-201ENST00000578142 81 ntBASIC-6.73□□□□□ -3.49
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms