Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 RNU6-389P-201ENST00000517048 105 ntBASIC-4.01□□□□□ -3.05
USE1Q9NZ43 Y_RNA.219-201ENST00000364232 113 ntBASIC-4.02□□□□□ -3.05
USE1Q9NZ43 SNORD45A-201ENST00000384512 84 ntBASIC-4.03□□□□□ -3.05
USE1Q9NZ43 RNU6-755P-201ENST00000364400 103 ntBASIC-4.04□□□□□ -3.06
USE1Q9NZ43 RNU6-886P-201ENST00000384319 105 ntBASIC-4.04□□□□□ -3.06
USE1Q9NZ43 Y_RNA.604-201ENST00000410574 102 ntBASIC-4.04□□□□□ -3.06
USE1Q9NZ43 RNU6-327P-201ENST00000516270 127 ntBASIC-4.04□□□□□ -3.06
USE1Q9NZ43 Y_RNA.129-201ENST00000363392 110 ntBASIC-4.05□□□□□ -3.06
USE1Q9NZ43 SNORA63.4-201ENST00000362763 126 ntBASIC-4.06□□□□□ -3.06
USE1Q9NZ43 SNORD116-22-201ENST00000384430 92 ntBASIC-4.06□□□□□ -3.06
USE1Q9NZ43 MIR5693-201ENST00000577722 73 ntBASIC-4.06□□□□□ -3.06
USE1Q9NZ43 MIR548BB-201ENST00000626714 66 ntBASIC-4.06□□□□□ -3.06
USE1Q9NZ43 Y_RNA.434-201ENST00000384090 100 ntBASIC-4.08□□□□□ -3.06
USE1Q9NZ43 RNY4P25-201ENST00000459254 96 ntBASIC-4.08□□□□□ -3.06
USE1Q9NZ43 AL731768.1-201ENST00000603124 139 ntBASIC-4.08□□□□□ -3.06
USE1Q9NZ43 Y_RNA.544-201ENST00000384650 113 ntBASIC-4.09□□□□□ -3.06
USE1Q9NZ43 RNU6-789P-201ENST00000517105 102 ntBASIC-4.09□□□□□ -3.06
USE1Q9NZ43 RNU6-1277P-201ENST00000364561 107 ntBASIC-4.1□□□□□ -3.07
USE1Q9NZ43 RNU6-219P-201ENST00000364728 107 ntBASIC-4.1□□□□□ -3.07
USE1Q9NZ43 RNU6-497P-201ENST00000365316 104 ntBASIC-4.1□□□□□ -3.07
USE1Q9NZ43 RNU6-380P-201ENST00000410207 107 ntBASIC-4.1□□□□□ -3.07
USE1Q9NZ43 RNU6-346P-201ENST00000516288 111 ntBASIC-4.1□□□□□ -3.07
USE1Q9NZ43 RNU6-1121P-201ENST00000516802 109 ntBASIC-4.1□□□□□ -3.07
USE1Q9NZ43 MIR7110-201ENST00000612638 86 ntBASIC-4.11□□□□□ -3.07
USE1Q9NZ43 RNU6-1047P-201ENST00000364418 107 ntBASIC-4.12□□□□□ -3.07
USE1Q9NZ43 SNORD116-14-201ENST00000383894 92 ntBASIC-4.12□□□□□ -3.07
USE1Q9NZ43 SNORD116-17-201ENST00000383929 92 ntBASIC-4.12□□□□□ -3.07
USE1Q9NZ43 SNORD116-15-201ENST00000384445 92 ntBASIC-4.12□□□□□ -3.07
USE1Q9NZ43 SNORD116-19-201ENST00000384729 92 ntBASIC-4.12□□□□□ -3.07
USE1Q9NZ43 Y_RNA.566-201ENST00000384735 101 ntBASIC-4.12□□□□□ -3.07
USE1Q9NZ43 MIR1254-1-201ENST00000408257 97 ntBASIC-4.12□□□□□ -3.07
USE1Q9NZ43 RNU6-267P-201ENST00000516714 103 ntBASIC-4.12□□□□□ -3.07
USE1Q9NZ43 MIR2052-201ENST00000636055 55 ntBASIC-4.13□□□□□ -3.07
USE1Q9NZ43 RNU6-803P-201ENST00000516034 102 ntBASIC-4.14□□□□□ -3.07
USE1Q9NZ43 RNU6-1206P-201ENST00000516339 103 ntBASIC-4.14□□□□□ -3.07
USE1Q9NZ43 RNU6-176P-201ENST00000517196 105 ntBASIC-4.14□□□□□ -3.07
USE1Q9NZ43 AP001318.4-201ENST00000616637 121 ntBASIC-4.14□□□□□ -3.07
USE1Q9NZ43 RNU6-810P-201ENST00000364001 107 ntBASIC-4.15□□□□□ -3.07
USE1Q9NZ43 RNU6-590P-201ENST00000365039 107 ntBASIC-4.15□□□□□ -3.07
USE1Q9NZ43 Y_RNA.658-201ENST00000515990 97 ntBASIC-4.15□□□□□ -3.07
USE1Q9NZ43 Y_RNA.830-201ENST00000628531 96 ntBASIC-4.15□□□□□ -3.07
USE1Q9NZ43 MIR4426-201ENST00000640330 63 ntBASIC-4.15□□□□□ -3.07
USE1Q9NZ43 Y_RNA.611-201ENST00000410682 108 ntBASIC-4.16□□□□□ -3.08
USE1Q9NZ43 MIR664A-201ENST00000626086 82 ntBASIC-4.16□□□□□ -3.08
USE1Q9NZ43 RNU6-300P-201ENST00000459080 104 ntBASIC-4.17□□□□□ -3.08
USE1Q9NZ43 RNU6-345P-201ENST00000517001 107 ntBASIC-4.17□□□□□ -3.08
USE1Q9NZ43 RNU6-1296P-201ENST00000383879 107 ntBASIC-4.18□□□□□ -3.08
USE1Q9NZ43 SNORD45.2-201ENST00000363552 72 ntBASIC-4.19□□□□□ -3.08
USE1Q9NZ43 RNU6-1045P-201ENST00000516321 107 ntBASIC-4.19□□□□□ -3.08
USE1Q9NZ43 MIRLET7A3-201ENST00000362116 74 ntBASIC-4.2□□□□□ -3.08
USE1Q9NZ43 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-4.2□□□□□ -3.08
USE1Q9NZ43 RNU6-907P-201ENST00000390924 102 ntBASIC-4.21□□□□□ -3.08
USE1Q9NZ43 RNU6-92P-201ENST00000605893 104 ntBASIC-4.21□□□□□ -3.08
USE1Q9NZ43 Y_RNA.320-201ENST00000365144 102 ntBASIC-4.22□□□□□ -3.08
USE1Q9NZ43 Y_RNA.506-201ENST00000384494 102 ntBASIC-4.22□□□□□ -3.08
USE1Q9NZ43 RNY1P5-201ENST00000383890 115 ntBASIC-4.23□□□□□ -3.09
USE1Q9NZ43 RNU6-463P-201ENST00000384340 107 ntBASIC-4.23□□□□□ -3.09
USE1Q9NZ43 RNU6-800P-201ENST00000384473 103 ntBASIC-4.23□□□□□ -3.09
USE1Q9NZ43 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-4.23□□□□□ -3.09
USE1Q9NZ43 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-4.23□□□□□ -3.09
USE1Q9NZ43 Y_RNA.63-201ENST00000362841 102 ntBASIC-4.24□□□□□ -3.09
USE1Q9NZ43 RNU6-231P-201ENST00000517122 103 ntBASIC-4.24□□□□□ -3.09
USE1Q9NZ43 AL117351.2-201ENST00000513571 157 ntBASIC-4.25□□□□□ -3.09
USE1Q9NZ43 SNORD116.2-201ENST00000391251 93 ntBASIC-4.26□□□□□ -3.09
USE1Q9NZ43 Y_RNA.79-201ENST00000362992 113 ntBASIC-4.27□□□□□ -3.09
USE1Q9NZ43 Y_RNA.612-201ENST00000410717 95 ntBASIC-4.27□□□□□ -3.09
USE1Q9NZ43 AC006160.2-201ENST00000637708 154 ntBASIC-4.27□□□□□ -3.09
USE1Q9NZ43 Y_RNA.134-201ENST00000363435 105 ntBASIC-4.28□□□□□ -3.09
USE1Q9NZ43 Y_RNA.464-201ENST00000384282 110 ntBASIC-4.28□□□□□ -3.09
USE1Q9NZ43 SNORD116-24-201ENST00000384549 92 ntBASIC-4.28□□□□□ -3.09
USE1Q9NZ43 TMSB4XP3-201ENST00000445144 114 ntBASIC-4.28□□□□□ -3.09
USE1Q9NZ43 MALAT1.1-201ENST00000618249 95 ntBASIC-4.28□□□□□ -3.09
USE1Q9NZ43 Y_RNA.266-201ENST00000364678 96 ntBASIC-4.29□□□□□ -3.1
USE1Q9NZ43 RNU6-895P-201ENST00000384125 103 ntBASIC-4.29□□□□□ -3.1
USE1Q9NZ43 SNORA40B-201ENST00000385573 128 ntBASIC-4.29□□□□□ -3.1
USE1Q9NZ43 RNU6-542P-201ENST00000516405 103 ntBASIC-4.29□□□□□ -3.1
USE1Q9NZ43 MIR548AI-201ENST00000579940 88 ntBASIC-4.29□□□□□ -3.1
USE1Q9NZ43 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-4.3□□□□□ -3.1
USE1Q9NZ43 AL451105.1-201ENST00000450005 189 ntBASIC-4.3□□□□□ -3.1
USE1Q9NZ43 RNU6-1212P-201ENST00000517023 104 ntBASIC-4.3□□□□□ -3.1
USE1Q9NZ43 SNORD60.1-201ENST00000362451 73 ntBASIC-4.31□□□□□ -3.1
USE1Q9NZ43 RNU6-1241P-201ENST00000384536 107 ntBASIC-4.31□□□□□ -3.1
USE1Q9NZ43 RNU6-255P-201ENST00000516957 105 ntBASIC-4.31□□□□□ -3.1
USE1Q9NZ43 MT-TG-201ENST00000387429 68 ntBASIC-4.32□□□□□ -3.1
USE1Q9NZ43 RNU6-315P-201ENST00000362666 107 ntBASIC-4.33□□□□□ -3.1
USE1Q9NZ43 MIR154-201ENST00000385243 84 ntBASIC-4.34□□□□□ -3.1
USE1Q9NZ43 Y_RNA.261-201ENST00000364631 102 ntBASIC-4.37□□□□□ -3.11
USE1Q9NZ43 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-4.38□□□□□ -3.11
USE1Q9NZ43 AL359920.1-201ENST00000618332 176 ntBASIC-4.38□□□□□ -3.11
USE1Q9NZ43 Y_RNA.17-201ENST00000362433 111 ntBASIC-4.39□□□□□ -3.11
USE1Q9NZ43 RNU6-1044P-201ENST00000384755 107 ntBASIC-4.39□□□□□ -3.11
USE1Q9NZ43 SNORA40.13-201ENST00000516379 120 ntBASIC-4.39□□□□□ -3.11
USE1Q9NZ43 RNU6-675P-201ENST00000384236 104 ntBASIC-4.4□□□□□ -3.11
USE1Q9NZ43 AL031737.1-201ENST00000450125 223 ntBASIC-4.4□□□□□ -3.11
USE1Q9NZ43 RNU6-1169P-201ENST00000363537 103 ntBASIC-4.41□□□□□ -3.12
USE1Q9NZ43 Y_RNA.273-201ENST00000364703 102 ntBASIC-4.41□□□□□ -3.12
USE1Q9NZ43 RNU6-70P-201ENST00000516438 60 ntBASIC-4.41□□□□□ -3.12
USE1Q9NZ43 RNU6-589P-201ENST00000516485 107 ntBASIC-4.41□□□□□ -3.12
USE1Q9NZ43 SNORA40.16-201ENST00000517238 121 ntBASIC-4.41□□□□□ -3.12
USE1Q9NZ43 Y_RNA.607-201ENST00000410597 98 ntBASIC-4.43□□□□□ -3.12
Retrieved 100 of 98,524 protein–RNA pairs in 192.3 ms