Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SNORD18.1-201ENST00000363807 70 ntBASIC-1.74□□□□□ -2.69
DDX28Q9NUL7 RNU6-974P-201ENST00000384099 108 ntBASIC-1.74□□□□□ -2.69
DDX28Q9NUL7 RNU6-228P-201ENST00000362700 106 ntBASIC-1.75□□□□□ -2.69
DDX28Q9NUL7 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.75□□□□□ -2.69
DDX28Q9NUL7 SNORD115-31-201ENST00000365318 82 ntBASIC-1.75□□□□□ -2.69
DDX28Q9NUL7 RNY3P8-201ENST00000411366 126 ntBASIC-1.75□□□□□ -2.69
DDX28Q9NUL7 RNU6-979P-201ENST00000383896 107 ntBASIC-1.76□□□□□ -2.69
DDX28Q9NUL7 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.76□□□□□ -2.69
DDX28Q9NUL7 RNA5SP89-201ENST00000410300 108 ntBASIC-1.76□□□□□ -2.69
DDX28Q9NUL7 MIR4712-201ENST00000583750 82 ntBASIC-1.76□□□□□ -2.69
DDX28Q9NUL7 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.77□□□□□ -2.69
DDX28Q9NUL7 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.77□□□□□ -2.69
DDX28Q9NUL7 MIR154-201ENST00000385243 84 ntBASIC-1.77□□□□□ -2.69
DDX28Q9NUL7 AC108019.1-201ENST00000512540 175 ntBASIC-1.77□□□□□ -2.69
DDX28Q9NUL7 RNU6-983P-201ENST00000516004 103 ntBASIC-1.77□□□□□ -2.69
DDX28Q9NUL7 RNU6-70P-201ENST00000516438 60 ntBASIC-1.77□□□□□ -2.69
DDX28Q9NUL7 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.77□□□□□ -2.69
DDX28Q9NUL7 U6.97-201ENST00000636904 101 ntBASIC-1.77□□□□□ -2.69
DDX28Q9NUL7 SNORA27.2-201ENST00000363365 126 ntBASIC-1.78□□□□□ -2.69
DDX28Q9NUL7 MIR125B1-201ENST00000385236 88 ntBASIC-1.78□□□□□ -2.69
DDX28Q9NUL7 RNU6-523P-201ENST00000516304 54 ntBASIC-1.78□□□□□ -2.69
DDX28Q9NUL7 RNU6-841P-201ENST00000383872 107 ntBASIC-1.79□□□□□ -2.7
DDX28Q9NUL7 RNU6-895P-201ENST00000384125 103 ntBASIC-1.79□□□□□ -2.7
DDX28Q9NUL7 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.8□□□□□ -2.7
DDX28Q9NUL7 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.8□□□□□ -2.7
DDX28Q9NUL7 RNU7-171P-201ENST00000459581 62 ntBASIC-1.8□□□□□ -2.7
DDX28Q9NUL7 MIR548AM-201ENST00000584298 74 ntBASIC-1.8□□□□□ -2.7
DDX28Q9NUL7 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.81□□□□□ -2.7
DDX28Q9NUL7 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.81□□□□□ -2.7
DDX28Q9NUL7 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.81□□□□□ -2.7
DDX28Q9NUL7 MIR4756-201ENST00000577874 78 ntBASIC-1.81□□□□□ -2.7
DDX28Q9NUL7 MIR3134-201ENST00000579433 74 ntBASIC-1.81□□□□□ -2.7
DDX28Q9NUL7 MIR1245B-201ENST00000636115 69 ntBASIC-1.82□□□□□ -2.7
DDX28Q9NUL7 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.83□□□□□ -2.7
DDX28Q9NUL7 Y_RNA.291-201ENST00000364886 113 ntBASIC-1.83□□□□□ -2.7
DDX28Q9NUL7 RNY4P30-201ENST00000410216 95 ntBASIC-1.84□□□□□ -2.7
DDX28Q9NUL7 RNU6-242P-201ENST00000384359 107 ntBASIC-1.86□□□□□ -2.71
DDX28Q9NUL7 RNU6-687P-201ENST00000516443 89 ntBASIC-1.86□□□□□ -2.71
DDX28Q9NUL7 RNU6-92P-201ENST00000605893 104 ntBASIC-1.86□□□□□ -2.71
DDX28Q9NUL7 MIR494-201ENST00000349529 81 ntBASIC-1.87□□□□□ -2.71
DDX28Q9NUL7 SNORD60.1-201ENST00000362451 73 ntBASIC-1.87□□□□□ -2.71
DDX28Q9NUL7 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.87□□□□□ -2.71
DDX28Q9NUL7 RNU4-88P-201ENST00000411220 86 ntBASIC-1.87□□□□□ -2.71
DDX28Q9NUL7 RNU6-542P-201ENST00000516405 103 ntBASIC-1.87□□□□□ -2.71
DDX28Q9NUL7 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.87□□□□□ -2.71
DDX28Q9NUL7 RNU6-810P-201ENST00000364001 107 ntBASIC-1.88□□□□□ -2.71
DDX28Q9NUL7 MIR581-201ENST00000384895 96 ntBASIC-1.89□□□□□ -2.71
DDX28Q9NUL7 MIR548W-201ENST00000581970 74 ntBASIC-1.89□□□□□ -2.71
DDX28Q9NUL7 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.9□□□□□ -2.71
DDX28Q9NUL7 RNU6-119P-201ENST00000364882 107 ntBASIC-1.9□□□□□ -2.71
DDX28Q9NUL7 snoU13.10-201ENST00000459301 103 ntBASIC-1.9□□□□□ -2.71
DDX28Q9NUL7 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.9□□□□□ -2.71
DDX28Q9NUL7 RNU6-980P-201ENST00000516925 103 ntBASIC-1.9□□□□□ -2.71
DDX28Q9NUL7 MIR664B-201ENST00000626756 61 ntBASIC-1.9□□□□□ -2.71
DDX28Q9NUL7 MIR202-201ENST00000362219 110 ntBASIC-1.91□□□□□ -2.72
DDX28Q9NUL7 RNU6-153P-201ENST00000364422 104 ntBASIC-1.91□□□□□ -2.72
DDX28Q9NUL7 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.91□□□□□ -2.72
DDX28Q9NUL7 RNU6-520P-201ENST00000384717 104 ntBASIC-1.91□□□□□ -2.72
DDX28Q9NUL7 MIR450A2-201ENST00000385022 100 ntBASIC-1.91□□□□□ -2.72
DDX28Q9NUL7 RNU6-231P-201ENST00000517122 103 ntBASIC-1.91□□□□□ -2.72
DDX28Q9NUL7 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.91□□□□□ -2.72
DDX28Q9NUL7 MIR7110-201ENST00000612638 86 ntBASIC-1.91□□□□□ -2.72
DDX28Q9NUL7 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.92□□□□□ -2.72
DDX28Q9NUL7 RNU7-160P-201ENST00000516660 62 ntBASIC-1.92□□□□□ -2.72
DDX28Q9NUL7 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.92□□□□□ -2.72
DDX28Q9NUL7 RNU6-649P-201ENST00000384463 107 ntBASIC-1.93□□□□□ -2.72
DDX28Q9NUL7 SNORD116.2-201ENST00000391251 93 ntBASIC-1.93□□□□□ -2.72
DDX28Q9NUL7 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.93□□□□□ -2.72
DDX28Q9NUL7 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.93□□□□□ -2.72
DDX28Q9NUL7 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.94□□□□□ -2.72
DDX28Q9NUL7 RNU6-828P-201ENST00000364876 107 ntBASIC-1.94□□□□□ -2.72
DDX28Q9NUL7 RNU6-787P-201ENST00000384032 107 ntBASIC-1.94□□□□□ -2.72
DDX28Q9NUL7 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.94□□□□□ -2.72
DDX28Q9NUL7 MIR4666B-201ENST00000578142 81 ntBASIC-1.94□□□□□ -2.72
DDX28Q9NUL7 U2.22-201ENST00000636441 106 ntBASIC-1.94□□□□□ -2.72
DDX28Q9NUL7 MIR496-201ENST00000385226 102 ntBASIC-1.95□□□□□ -2.72
DDX28Q9NUL7 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.95□□□□□ -2.72
DDX28Q9NUL7 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.95□□□□□ -2.72
DDX28Q9NUL7 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.96□□□□□ -2.72
DDX28Q9NUL7 SNORD18C-201ENST00000362704 69 ntBASIC-1.97□□□□□ -2.72
DDX28Q9NUL7 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.97□□□□□ -2.72
DDX28Q9NUL7 RNU6-294P-201ENST00000364999 102 ntBASIC-1.97□□□□□ -2.72
DDX28Q9NUL7 RNU6-411P-201ENST00000384451 107 ntBASIC-1.98□□□□□ -2.73
DDX28Q9NUL7 RNY4P7-201ENST00000364600 96 ntBASIC-1.99□□□□□ -2.73
DDX28Q9NUL7 SNORA40B-201ENST00000385573 128 ntBASIC-1.99□□□□□ -2.73
DDX28Q9NUL7 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.99□□□□□ -2.73
DDX28Q9NUL7 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.99□□□□□ -2.73
DDX28Q9NUL7 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.99□□□□□ -2.73
DDX28Q9NUL7 MIR548N-201ENST00000408742 75 ntBASIC-2□□□□□ -2.73
DDX28Q9NUL7 SNORA40.16-201ENST00000517238 121 ntBASIC-2□□□□□ -2.73
DDX28Q9NUL7 RNU6-663P-201ENST00000391105 106 ntBASIC-2.01□□□□□ -2.73
DDX28Q9NUL7 SNORD60-201ENST00000383903 83 ntBASIC-2.02□□□□□ -2.73
DDX28Q9NUL7 RNU6-820P-201ENST00000384273 107 ntBASIC-2.02□□□□□ -2.73
DDX28Q9NUL7 RNU6-530P-201ENST00000391180 107 ntBASIC-2.02□□□□□ -2.73
DDX28Q9NUL7 RNU6-634P-201ENST00000459134 106 ntBASIC-2.02□□□□□ -2.73
DDX28Q9NUL7 RNU6-118P-201ENST00000516552 102 ntBASIC-2.02□□□□□ -2.73
DDX28Q9NUL7 SNORA25.5-201ENST00000363782 126 ntBASIC-2.03□□□□□ -2.73
DDX28Q9NUL7 SNORA17.4-201ENST00000391287 132 ntBASIC-2.03□□□□□ -2.73
DDX28Q9NUL7 RNU6-122P-201ENST00000516818 107 ntBASIC-2.03□□□□□ -2.73
DDX28Q9NUL7 U7.4-201ENST00000614961 63 ntBASIC-2.04□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 250.9 ms