Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNU6-695P-201ENST00000391157 104 ntBASIC-2.69□□□□□ -2.84
CHMP4AQ9BY43 RNU6-983P-201ENST00000516004 103 ntBASIC-2.69□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.69□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.788-201ENST00000622394 112 ntBASIC-2.69□□□□□ -2.84
CHMP4AQ9BY43 SNORD115-31-201ENST00000365318 82 ntBASIC-2.7□□□□□ -2.84
CHMP4AQ9BY43 MIR3134-201ENST00000579433 74 ntBASIC-2.7□□□□□ -2.84
CHMP4AQ9BY43 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.7□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.71□□□□□ -2.84
CHMP4AQ9BY43 SNORD18.1-201ENST00000363807 70 ntBASIC-2.71□□□□□ -2.84
CHMP4AQ9BY43 RNU6-294P-201ENST00000364999 102 ntBASIC-2.71□□□□□ -2.84
CHMP4AQ9BY43 RNU7-151P-201ENST00000516930 53 ntBASIC-2.71□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.223-201ENST00000364290 113 ntBASIC-2.72□□□□□ -2.84
CHMP4AQ9BY43 RNU6-153P-201ENST00000364422 104 ntBASIC-2.72□□□□□ -2.84
CHMP4AQ9BY43 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.72□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.694-201ENST00000516677 117 ntBASIC-2.72□□□□□ -2.84
CHMP4AQ9BY43 MIR579-201ENST00000385221 98 ntBASIC-2.73□□□□□ -2.85
CHMP4AQ9BY43 RNU6-172P-201ENST00000411000 93 ntBASIC-2.73□□□□□ -2.85
CHMP4AQ9BY43 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-2.73□□□□□ -2.85
CHMP4AQ9BY43 MIR4666B-201ENST00000578142 81 ntBASIC-2.75□□□□□ -2.85
CHMP4AQ9BY43 U2.22-201ENST00000636441 106 ntBASIC-2.75□□□□□ -2.85
CHMP4AQ9BY43 RNU6-542P-201ENST00000516405 103 ntBASIC-2.76□□□□□ -2.85
CHMP4AQ9BY43 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.76□□□□□ -2.85
CHMP4AQ9BY43 AC120024.2-201ENST00000576526 175 ntBASIC-2.76□□□□□ -2.85
CHMP4AQ9BY43 RNU6-687P-201ENST00000516443 89 ntBASIC-2.78□□□□□ -2.85
CHMP4AQ9BY43 RNU6-563P-201ENST00000364872 108 ntBASIC-2.79□□□□□ -2.86
CHMP4AQ9BY43 MIR496-201ENST00000385226 102 ntBASIC-2.79□□□□□ -2.86
CHMP4AQ9BY43 RNU6-258P-201ENST00000390884 101 ntBASIC-2.79□□□□□ -2.86
CHMP4AQ9BY43 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.8□□□□□ -2.86
CHMP4AQ9BY43 SNORD63.2-201ENST00000516303 64 ntBASIC-2.8□□□□□ -2.86
CHMP4AQ9BY43 MIR3123-201ENST00000583417 75 ntBASIC-2.8□□□□□ -2.86
CHMP4AQ9BY43 RNU6-841P-201ENST00000383872 107 ntBASIC-2.81□□□□□ -2.86
CHMP4AQ9BY43 AC108019.1-201ENST00000512540 175 ntBASIC-2.81□□□□□ -2.86
CHMP4AQ9BY43 RNU6-92P-201ENST00000605893 104 ntBASIC-2.81□□□□□ -2.86
CHMP4AQ9BY43 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.81□□□□□ -2.86
CHMP4AQ9BY43 RNU6-411P-201ENST00000384451 107 ntBASIC-2.82□□□□□ -2.86
CHMP4AQ9BY43 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.82□□□□□ -2.86
CHMP4AQ9BY43 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.83□□□□□ -2.86
CHMP4AQ9BY43 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2.83□□□□□ -2.86
CHMP4AQ9BY43 RNU6-228P-201ENST00000362700 106 ntBASIC-2.84□□□□□ -2.86
CHMP4AQ9BY43 RNU6-669P-201ENST00000365575 107 ntBASIC-2.84□□□□□ -2.86
CHMP4AQ9BY43 MIR7978-201ENST00000636158 59 ntBASIC-2.85□□□□□ -2.87
CHMP4AQ9BY43 RNU6-820P-201ENST00000384273 107 ntBASIC-2.86□□□□□ -2.87
CHMP4AQ9BY43 MIR5582-201ENST00000579697 68 ntBASIC-2.86□□□□□ -2.87
CHMP4AQ9BY43 SNORA27.2-201ENST00000363365 126 ntBASIC-2.87□□□□□ -2.87
CHMP4AQ9BY43 MIR548AM-201ENST00000584298 74 ntBASIC-2.87□□□□□ -2.87
CHMP4AQ9BY43 U7.4-201ENST00000614961 63 ntBASIC-2.87□□□□□ -2.87
CHMP4AQ9BY43 RNU6-787P-201ENST00000384032 107 ntBASIC-2.88□□□□□ -2.87
CHMP4AQ9BY43 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.88□□□□□ -2.87
CHMP4AQ9BY43 MTRNR2L9-201ENST00000622562 75 ntBASIC-2.89□□□□□ -2.87
CHMP4AQ9BY43 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.9□□□□□ -2.87
CHMP4AQ9BY43 Y_RNA.369-201ENST00000365568 117 ntBASIC-2.91□□□□□ -2.88
CHMP4AQ9BY43 MIR4756-201ENST00000577874 78 ntBASIC-2.92□□□□□ -2.88
CHMP4AQ9BY43 MIR664B-201ENST00000626756 61 ntBASIC-2.92□□□□□ -2.88
CHMP4AQ9BY43 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.93□□□□□ -2.88
CHMP4AQ9BY43 AC062037.1-201ENST00000605302 128 ntBASIC-2.94□□□□□ -2.88
CHMP4AQ9BY43 SNORD60.1-201ENST00000362451 73 ntBASIC-2.95□□□□□ -2.88
CHMP4AQ9BY43 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.95□□□□□ -2.88
CHMP4AQ9BY43 MIR125B1-201ENST00000385236 88 ntBASIC-2.95□□□□□ -2.88
CHMP4AQ9BY43 RNY4P7-201ENST00000364600 96 ntBASIC-2.96□□□□□ -2.88
CHMP4AQ9BY43 RNU6-663P-201ENST00000391105 106 ntBASIC-2.96□□□□□ -2.88
CHMP4AQ9BY43 RNU6-523P-201ENST00000516304 54 ntBASIC-2.96□□□□□ -2.88
CHMP4AQ9BY43 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.97□□□□□ -2.88
CHMP4AQ9BY43 MIR7110-201ENST00000612638 86 ntBASIC-2.97□□□□□ -2.88
CHMP4AQ9BY43 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.98□□□□□ -2.89
CHMP4AQ9BY43 RNU6-118P-201ENST00000516552 102 ntBASIC-2.98□□□□□ -2.89
CHMP4AQ9BY43 RNU6-634P-201ENST00000459134 106 ntBASIC-2.99□□□□□ -2.89
CHMP4AQ9BY43 AC013734.1-201ENST00000619329 111 ntBASIC-2.99□□□□□ -2.89
CHMP4AQ9BY43 RNU7-160P-201ENST00000516660 62 ntBASIC-3□□□□□ -2.89
CHMP4AQ9BY43 AC005520.4-201ENST00000604337 90 ntBASIC-3□□□□□ -2.89
CHMP4AQ9BY43 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-3□□□□□ -2.89
CHMP4AQ9BY43 Y_RNA.139-201ENST00000363464 102 ntBASIC-3.01□□□□□ -2.89
CHMP4AQ9BY43 RNU6-974P-201ENST00000384099 108 ntBASIC-3.02□□□□□ -2.89
CHMP4AQ9BY43 SNORD19B.1-201ENST00000630615 80 ntBASIC-3.02□□□□□ -2.89
CHMP4AQ9BY43 Y_RNA.545-201ENST00000384652 105 ntBASIC-3.03□□□□□ -2.89
CHMP4AQ9BY43 SNORD116.2-201ENST00000391251 93 ntBASIC-3.03□□□□□ -2.89
CHMP4AQ9BY43 RNU6-231P-201ENST00000517122 103 ntBASIC-3.03□□□□□ -2.89
CHMP4AQ9BY43 U6.97-201ENST00000636904 101 ntBASIC-3.03□□□□□ -2.89
CHMP4AQ9BY43 RNY3P8-201ENST00000411366 126 ntBASIC-3.04□□□□□ -2.9
CHMP4AQ9BY43 RNU6-980P-201ENST00000516925 103 ntBASIC-3.04□□□□□ -2.9
CHMP4AQ9BY43 Y_RNA.69-201ENST00000362885 109 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 Y_RNA.81-201ENST00000362997 102 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 RNU6-810P-201ENST00000364001 107 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 RNU4-88P-201ENST00000411220 86 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 SNORD54-201ENST00000459159 67 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 RNU6-828P-201ENST00000364876 107 ntBASIC-3.06□□□□□ -2.9
CHMP4AQ9BY43 SNORD30.1-201ENST00000391309 70 ntBASIC-3.08□□□□□ -2.9
CHMP4AQ9BY43 Y_RNA.204-201ENST00000364112 102 ntBASIC-3.09□□□□□ -2.9
CHMP4AQ9BY43 Y_RNA.284-201ENST00000364806 102 ntBASIC-3.09□□□□□ -2.9
CHMP4AQ9BY43 MIR3202-2-201ENST00000635980 79 ntBASIC-3.09□□□□□ -2.9
CHMP4AQ9BY43 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-3.1□□□□□ -2.91
CHMP4AQ9BY43 SNORA25.4-201ENST00000363666 124 ntBASIC-3.11□□□□□ -2.91
CHMP4AQ9BY43 SNORA25.5-201ENST00000363782 126 ntBASIC-3.11□□□□□ -2.91
CHMP4AQ9BY43 RNU6-520P-201ENST00000384717 104 ntBASIC-3.12□□□□□ -2.91
CHMP4AQ9BY43 MIR548W-201ENST00000581970 74 ntBASIC-3.12□□□□□ -2.91
CHMP4AQ9BY43 RNU6-871P-201ENST00000516122 100 ntBASIC-3.14□□□□□ -2.91
CHMP4AQ9BY43 Y_RNA.591-201ENST00000410228 104 ntBASIC-3.15□□□□□ -2.91
CHMP4AQ9BY43 RNU6-122P-201ENST00000516818 107 ntBASIC-3.15□□□□□ -2.91
CHMP4AQ9BY43 snoU13.10-201ENST00000459301 103 ntBASIC-3.16□□□□□ -2.92
CHMP4AQ9BY43 RNA5SP93-201ENST00000362525 114 ntBASIC-3.17□□□□□ -2.92
Retrieved 100 of 98,524 protein–RNA pairs in 183.3 ms