Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNU6-695P-201ENST00000391157 104 ntBASIC-2.69□□□□□ -2.84
CHMP4AQ9BY43 RNU6-983P-201ENST00000516004 103 ntBASIC-2.69□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.69□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.788-201ENST00000622394 112 ntBASIC-2.69□□□□□ -2.84
CHMP4AQ9BY43 SNORD115-31-201ENST00000365318 82 ntBASIC-2.7□□□□□ -2.84
CHMP4AQ9BY43 MIR3134-201ENST00000579433 74 ntBASIC-2.7□□□□□ -2.84
CHMP4AQ9BY43 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.7□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.71□□□□□ -2.84
CHMP4AQ9BY43 SNORD18.1-201ENST00000363807 70 ntBASIC-2.71□□□□□ -2.84
CHMP4AQ9BY43 RNU6-294P-201ENST00000364999 102 ntBASIC-2.71□□□□□ -2.84
CHMP4AQ9BY43 RNU7-151P-201ENST00000516930 53 ntBASIC-2.71□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.223-201ENST00000364290 113 ntBASIC-2.72□□□□□ -2.84
CHMP4AQ9BY43 RNU6-153P-201ENST00000364422 104 ntBASIC-2.72□□□□□ -2.84
CHMP4AQ9BY43 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.72□□□□□ -2.84
CHMP4AQ9BY43 Y_RNA.694-201ENST00000516677 117 ntBASIC-2.72□□□□□ -2.84
CHMP4AQ9BY43 MIR579-201ENST00000385221 98 ntBASIC-2.73□□□□□ -2.85
CHMP4AQ9BY43 RNU6-172P-201ENST00000411000 93 ntBASIC-2.73□□□□□ -2.85
CHMP4AQ9BY43 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-2.73□□□□□ -2.85
CHMP4AQ9BY43 MIR4666B-201ENST00000578142 81 ntBASIC-2.75□□□□□ -2.85
CHMP4AQ9BY43 U2.22-201ENST00000636441 106 ntBASIC-2.75□□□□□ -2.85
CHMP4AQ9BY43 RNU6-542P-201ENST00000516405 103 ntBASIC-2.76□□□□□ -2.85
CHMP4AQ9BY43 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.76□□□□□ -2.85
CHMP4AQ9BY43 AC120024.2-201ENST00000576526 175 ntBASIC-2.76□□□□□ -2.85
CHMP4AQ9BY43 RNU6-687P-201ENST00000516443 89 ntBASIC-2.78□□□□□ -2.85
CHMP4AQ9BY43 RNU6-563P-201ENST00000364872 108 ntBASIC-2.79□□□□□ -2.86
CHMP4AQ9BY43 MIR496-201ENST00000385226 102 ntBASIC-2.79□□□□□ -2.86
CHMP4AQ9BY43 RNU6-258P-201ENST00000390884 101 ntBASIC-2.79□□□□□ -2.86
CHMP4AQ9BY43 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.8□□□□□ -2.86
CHMP4AQ9BY43 SNORD63.2-201ENST00000516303 64 ntBASIC-2.8□□□□□ -2.86
CHMP4AQ9BY43 MIR3123-201ENST00000583417 75 ntBASIC-2.8□□□□□ -2.86
CHMP4AQ9BY43 RNU6-841P-201ENST00000383872 107 ntBASIC-2.81□□□□□ -2.86
CHMP4AQ9BY43 AC108019.1-201ENST00000512540 175 ntBASIC-2.81□□□□□ -2.86
CHMP4AQ9BY43 RNU6-92P-201ENST00000605893 104 ntBASIC-2.81□□□□□ -2.86
CHMP4AQ9BY43 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.81□□□□□ -2.86
CHMP4AQ9BY43 RNU6-411P-201ENST00000384451 107 ntBASIC-2.82□□□□□ -2.86
CHMP4AQ9BY43 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.82□□□□□ -2.86
CHMP4AQ9BY43 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.83□□□□□ -2.86
CHMP4AQ9BY43 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2.83□□□□□ -2.86
CHMP4AQ9BY43 RNU6-228P-201ENST00000362700 106 ntBASIC-2.84□□□□□ -2.86
CHMP4AQ9BY43 RNU6-669P-201ENST00000365575 107 ntBASIC-2.84□□□□□ -2.86
CHMP4AQ9BY43 MIR7978-201ENST00000636158 59 ntBASIC-2.85□□□□□ -2.87
CHMP4AQ9BY43 RNU6-820P-201ENST00000384273 107 ntBASIC-2.86□□□□□ -2.87
CHMP4AQ9BY43 MIR5582-201ENST00000579697 68 ntBASIC-2.86□□□□□ -2.87
CHMP4AQ9BY43 SNORA27.2-201ENST00000363365 126 ntBASIC-2.87□□□□□ -2.87
CHMP4AQ9BY43 MIR548AM-201ENST00000584298 74 ntBASIC-2.87□□□□□ -2.87
CHMP4AQ9BY43 U7.4-201ENST00000614961 63 ntBASIC-2.87□□□□□ -2.87
CHMP4AQ9BY43 RNU6-787P-201ENST00000384032 107 ntBASIC-2.88□□□□□ -2.87
CHMP4AQ9BY43 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.88□□□□□ -2.87
CHMP4AQ9BY43 MTRNR2L9-201ENST00000622562 75 ntBASIC-2.89□□□□□ -2.87
CHMP4AQ9BY43 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.9□□□□□ -2.87
CHMP4AQ9BY43 Y_RNA.369-201ENST00000365568 117 ntBASIC-2.91□□□□□ -2.88
CHMP4AQ9BY43 MIR4756-201ENST00000577874 78 ntBASIC-2.92□□□□□ -2.88
CHMP4AQ9BY43 MIR664B-201ENST00000626756 61 ntBASIC-2.92□□□□□ -2.88
CHMP4AQ9BY43 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.93□□□□□ -2.88
CHMP4AQ9BY43 AC062037.1-201ENST00000605302 128 ntBASIC-2.94□□□□□ -2.88
CHMP4AQ9BY43 SNORD60.1-201ENST00000362451 73 ntBASIC-2.95□□□□□ -2.88
CHMP4AQ9BY43 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.95□□□□□ -2.88
CHMP4AQ9BY43 MIR125B1-201ENST00000385236 88 ntBASIC-2.95□□□□□ -2.88
CHMP4AQ9BY43 RNY4P7-201ENST00000364600 96 ntBASIC-2.96□□□□□ -2.88
CHMP4AQ9BY43 RNU6-663P-201ENST00000391105 106 ntBASIC-2.96□□□□□ -2.88
CHMP4AQ9BY43 RNU6-523P-201ENST00000516304 54 ntBASIC-2.96□□□□□ -2.88
CHMP4AQ9BY43 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.97□□□□□ -2.88
CHMP4AQ9BY43 MIR7110-201ENST00000612638 86 ntBASIC-2.97□□□□□ -2.88
CHMP4AQ9BY43 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.98□□□□□ -2.89
CHMP4AQ9BY43 RNU6-118P-201ENST00000516552 102 ntBASIC-2.98□□□□□ -2.89
CHMP4AQ9BY43 RNU6-634P-201ENST00000459134 106 ntBASIC-2.99□□□□□ -2.89
CHMP4AQ9BY43 AC013734.1-201ENST00000619329 111 ntBASIC-2.99□□□□□ -2.89
CHMP4AQ9BY43 RNU7-160P-201ENST00000516660 62 ntBASIC-3□□□□□ -2.89
CHMP4AQ9BY43 AC005520.4-201ENST00000604337 90 ntBASIC-3□□□□□ -2.89
CHMP4AQ9BY43 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-3□□□□□ -2.89
CHMP4AQ9BY43 Y_RNA.139-201ENST00000363464 102 ntBASIC-3.01□□□□□ -2.89
CHMP4AQ9BY43 RNU6-974P-201ENST00000384099 108 ntBASIC-3.02□□□□□ -2.89
CHMP4AQ9BY43 SNORD19B.1-201ENST00000630615 80 ntBASIC-3.02□□□□□ -2.89
CHMP4AQ9BY43 Y_RNA.545-201ENST00000384652 105 ntBASIC-3.03□□□□□ -2.89
CHMP4AQ9BY43 SNORD116.2-201ENST00000391251 93 ntBASIC-3.03□□□□□ -2.89
CHMP4AQ9BY43 RNU6-231P-201ENST00000517122 103 ntBASIC-3.03□□□□□ -2.89
CHMP4AQ9BY43 U6.97-201ENST00000636904 101 ntBASIC-3.03□□□□□ -2.89
CHMP4AQ9BY43 RNY3P8-201ENST00000411366 126 ntBASIC-3.04□□□□□ -2.9
CHMP4AQ9BY43 RNU6-980P-201ENST00000516925 103 ntBASIC-3.04□□□□□ -2.9
CHMP4AQ9BY43 Y_RNA.69-201ENST00000362885 109 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 Y_RNA.81-201ENST00000362997 102 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 RNU6-810P-201ENST00000364001 107 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 RNU4-88P-201ENST00000411220 86 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 SNORD54-201ENST00000459159 67 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-3.05□□□□□ -2.9
CHMP4AQ9BY43 RNU6-828P-201ENST00000364876 107 ntBASIC-3.06□□□□□ -2.9
CHMP4AQ9BY43 SNORD30.1-201ENST00000391309 70 ntBASIC-3.08□□□□□ -2.9
CHMP4AQ9BY43 Y_RNA.204-201ENST00000364112 102 ntBASIC-3.09□□□□□ -2.9
CHMP4AQ9BY43 Y_RNA.284-201ENST00000364806 102 ntBASIC-3.09□□□□□ -2.9
CHMP4AQ9BY43 MIR3202-2-201ENST00000635980 79 ntBASIC-3.09□□□□□ -2.9
CHMP4AQ9BY43 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-3.1□□□□□ -2.91
CHMP4AQ9BY43 SNORA25.4-201ENST00000363666 124 ntBASIC-3.11□□□□□ -2.91
CHMP4AQ9BY43 SNORA25.5-201ENST00000363782 126 ntBASIC-3.11□□□□□ -2.91
CHMP4AQ9BY43 RNU6-520P-201ENST00000384717 104 ntBASIC-3.12□□□□□ -2.91
CHMP4AQ9BY43 MIR548W-201ENST00000581970 74 ntBASIC-3.12□□□□□ -2.91
CHMP4AQ9BY43 RNU6-871P-201ENST00000516122 100 ntBASIC-3.14□□□□□ -2.91
CHMP4AQ9BY43 Y_RNA.591-201ENST00000410228 104 ntBASIC-3.15□□□□□ -2.91
CHMP4AQ9BY43 RNU6-122P-201ENST00000516818 107 ntBASIC-3.15□□□□□ -2.91
CHMP4AQ9BY43 snoU13.10-201ENST00000459301 103 ntBASIC-3.16□□□□□ -2.92
CHMP4AQ9BY43 RNA5SP93-201ENST00000362525 114 ntBASIC-3.17□□□□□ -2.92
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms