Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 Y_RNA.694-201ENST00000516677 117 ntBASIC-2.57□□□□□ -2.82
SKA1Q96BD8 MIR450A2-201ENST00000385022 100 ntBASIC-2.58□□□□□ -2.82
SKA1Q96BD8 RNU6-608P-201ENST00000383927 104 ntBASIC-2.59□□□□□ -2.82
SKA1Q96BD8 MIR494-201ENST00000349529 81 ntBASIC-2.6□□□□□ -2.83
SKA1Q96BD8 U2.22-201ENST00000636441 106 ntBASIC-2.61□□□□□ -2.83
SKA1Q96BD8 RNU6-1276P-201ENST00000365372 104 ntBASIC-2.62□□□□□ -2.83
SKA1Q96BD8 SNORA41B-201ENST00000384785 128 ntBASIC-2.62□□□□□ -2.83
SKA1Q96BD8 RNU6-995P-201ENST00000391244 107 ntBASIC-2.62□□□□□ -2.83
SKA1Q96BD8 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.62□□□□□ -2.83
SKA1Q96BD8 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.63□□□□□ -2.83
SKA1Q96BD8 RNU6-153P-201ENST00000364422 104 ntBASIC-2.63□□□□□ -2.83
SKA1Q96BD8 MIR520D-201ENST00000385002 87 ntBASIC-2.63□□□□□ -2.83
SKA1Q96BD8 RNU6-980P-201ENST00000516925 103 ntBASIC-2.63□□□□□ -2.83
SKA1Q96BD8 RNU6-247P-201ENST00000362636 107 ntBASIC-2.64□□□□□ -2.83
SKA1Q96BD8 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.64□□□□□ -2.83
SKA1Q96BD8 RNU6-1267P-201ENST00000410747 107 ntBASIC-2.64□□□□□ -2.83
SKA1Q96BD8 MIR3170-201ENST00000582699 77 ntBASIC-2.64□□□□□ -2.83
SKA1Q96BD8 MIR3139-201ENST00000579145 76 ntBASIC-2.65□□□□□ -2.83
SKA1Q96BD8 SNORD1B-201ENST00000363091 84 ntBASIC-2.66□□□□□ -2.84
SKA1Q96BD8 RNU6-294P-201ENST00000364999 102 ntBASIC-2.66□□□□□ -2.84
SKA1Q96BD8 SNORD116-24-201ENST00000384549 92 ntBASIC-2.67□□□□□ -2.84
SKA1Q96BD8 RNU6-695P-201ENST00000391157 104 ntBASIC-2.67□□□□□ -2.84
SKA1Q96BD8 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-2.67□□□□□ -2.84
SKA1Q96BD8 MIR4666B-201ENST00000578142 81 ntBASIC-2.67□□□□□ -2.84
SKA1Q96BD8 Y_RNA.94-201ENST00000363068 106 ntBASIC-2.68□□□□□ -2.84
SKA1Q96BD8 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.68□□□□□ -2.84
SKA1Q96BD8 RNU6-542P-201ENST00000516405 103 ntBASIC-2.7□□□□□ -2.84
SKA1Q96BD8 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.7□□□□□ -2.84
SKA1Q96BD8 RNA5SP405-201ENST00000363059 114 ntBASIC-2.71□□□□□ -2.84
SKA1Q96BD8 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.71□□□□□ -2.84
SKA1Q96BD8 RNY4P7-201ENST00000364600 96 ntBASIC-2.72□□□□□ -2.84
SKA1Q96BD8 MT-TM-201ENST00000387377 68 ntBASIC-2.73□□□□□ -2.85
SKA1Q96BD8 MIR3134-201ENST00000579433 74 ntBASIC-2.73□□□□□ -2.85
SKA1Q96BD8 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.73□□□□□ -2.85
SKA1Q96BD8 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.73□□□□□ -2.85
SKA1Q96BD8 SNORD115-31-201ENST00000365318 82 ntBASIC-2.74□□□□□ -2.85
SKA1Q96BD8 RNU6-841P-201ENST00000383872 107 ntBASIC-2.74□□□□□ -2.85
SKA1Q96BD8 RNU6-820P-201ENST00000384273 107 ntBASIC-2.74□□□□□ -2.85
SKA1Q96BD8 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.75□□□□□ -2.85
SKA1Q96BD8 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.75□□□□□ -2.85
SKA1Q96BD8 RNU6-411P-201ENST00000384451 107 ntBASIC-2.76□□□□□ -2.85
SKA1Q96BD8 RNU6-687P-201ENST00000516443 89 ntBASIC-2.76□□□□□ -2.85
SKA1Q96BD8 RNU6-194P-201ENST00000363862 105 ntBASIC-2.77□□□□□ -2.85
SKA1Q96BD8 RNU6-172P-201ENST00000411000 93 ntBASIC-2.77□□□□□ -2.85
SKA1Q96BD8 RNU7-151P-201ENST00000516930 53 ntBASIC-2.77□□□□□ -2.85
SKA1Q96BD8 Y_RNA.788-201ENST00000622394 112 ntBASIC-2.77□□□□□ -2.85
SKA1Q96BD8 MIR3123-201ENST00000583417 75 ntBASIC-2.78□□□□□ -2.85
SKA1Q96BD8 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.79□□□□□ -2.86
SKA1Q96BD8 SNORD54-201ENST00000459159 67 ntBASIC-2.79□□□□□ -2.86
SKA1Q96BD8 RNU6-92P-201ENST00000605893 104 ntBASIC-2.79□□□□□ -2.86
SKA1Q96BD8 Y_RNA.369-201ENST00000365568 117 ntBASIC-2.8□□□□□ -2.86
SKA1Q96BD8 MIR548AM-201ENST00000584298 74 ntBASIC-2.8□□□□□ -2.86
SKA1Q96BD8 U7.4-201ENST00000614961 63 ntBASIC-2.82□□□□□ -2.86
SKA1Q96BD8 AC120024.2-201ENST00000576526 175 ntBASIC-2.83□□□□□ -2.86
SKA1Q96BD8 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.84□□□□□ -2.86
SKA1Q96BD8 MIR5582-201ENST00000579697 68 ntBASIC-2.84□□□□□ -2.86
SKA1Q96BD8 SNORA27.2-201ENST00000363365 126 ntBASIC-2.85□□□□□ -2.87
SKA1Q96BD8 MIR579-201ENST00000385221 98 ntBASIC-2.85□□□□□ -2.87
SKA1Q96BD8 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.85□□□□□ -2.87
SKA1Q96BD8 SNORD63.2-201ENST00000516303 64 ntBASIC-2.86□□□□□ -2.87
SKA1Q96BD8 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.87□□□□□ -2.87
SKA1Q96BD8 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2.87□□□□□ -2.87
SKA1Q96BD8 RNU4-88P-201ENST00000411220 86 ntBASIC-2.88□□□□□ -2.87
SKA1Q96BD8 MIR7978-201ENST00000636158 59 ntBASIC-2.88□□□□□ -2.87
SKA1Q96BD8 RNA5SP93-201ENST00000362525 114 ntBASIC-2.89□□□□□ -2.87
SKA1Q96BD8 RNU6-669P-201ENST00000365575 107 ntBASIC-2.89□□□□□ -2.87
SKA1Q96BD8 RNU6-787P-201ENST00000384032 107 ntBASIC-2.89□□□□□ -2.87
SKA1Q96BD8 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.89□□□□□ -2.87
SKA1Q96BD8 RNU6-563P-201ENST00000364872 108 ntBASIC-2.9□□□□□ -2.87
SKA1Q96BD8 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.9□□□□□ -2.87
SKA1Q96BD8 RNU6-258P-201ENST00000390884 101 ntBASIC-2.9□□□□□ -2.87
SKA1Q96BD8 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.9□□□□□ -2.87
SKA1Q96BD8 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.9□□□□□ -2.87
SKA1Q96BD8 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.9□□□□□ -2.87
SKA1Q96BD8 MTRNR2L9-201ENST00000622562 75 ntBASIC-2.92□□□□□ -2.88
SKA1Q96BD8 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.93□□□□□ -2.88
SKA1Q96BD8 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.93□□□□□ -2.88
SKA1Q96BD8 RNU7-160P-201ENST00000516660 62 ntBASIC-2.93□□□□□ -2.88
SKA1Q96BD8 MIR125B1-201ENST00000385236 88 ntBASIC-2.94□□□□□ -2.88
SKA1Q96BD8 RNU6-634P-201ENST00000459134 106 ntBASIC-2.94□□□□□ -2.88
SKA1Q96BD8 Y_RNA.81-201ENST00000362997 102 ntBASIC-2.95□□□□□ -2.88
SKA1Q96BD8 AC062037.1-201ENST00000605302 128 ntBASIC-2.95□□□□□ -2.88
SKA1Q96BD8 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.96□□□□□ -2.88
SKA1Q96BD8 RNU6-663P-201ENST00000391105 106 ntBASIC-2.96□□□□□ -2.88
SKA1Q96BD8 MIR7110-201ENST00000612638 86 ntBASIC-2.96□□□□□ -2.88
SKA1Q96BD8 SNORD60.1-201ENST00000362451 73 ntBASIC-2.97□□□□□ -2.88
SKA1Q96BD8 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.97□□□□□ -2.88
SKA1Q96BD8 RNU6-523P-201ENST00000516304 54 ntBASIC-2.98□□□□□ -2.89
SKA1Q96BD8 MIR3202-2-201ENST00000635980 79 ntBASIC-2.99□□□□□ -2.89
SKA1Q96BD8 Y_RNA.53-201ENST00000362765 102 ntBASIC-3.01□□□□□ -2.89
SKA1Q96BD8 SNORD19B.1-201ENST00000630615 80 ntBASIC-3.03□□□□□ -2.89
SKA1Q96BD8 Y_RNA.545-201ENST00000384652 105 ntBASIC-3.04□□□□□ -2.9
SKA1Q96BD8 RNU6-871P-201ENST00000516122 100 ntBASIC-3.04□□□□□ -2.9
SKA1Q96BD8 RNU6-828P-201ENST00000364876 107 ntBASIC-3.05□□□□□ -2.9
SKA1Q96BD8 RNU6-231P-201ENST00000517122 103 ntBASIC-3.05□□□□□ -2.9
SKA1Q96BD8 Y_RNA.139-201ENST00000363464 102 ntBASIC-3.06□□□□□ -2.9
SKA1Q96BD8 SNORA25.4-201ENST00000363666 124 ntBASIC-3.06□□□□□ -2.9
SKA1Q96BD8 MIR466-201ENST00000580653 84 ntBASIC-3.07□□□□□ -2.9
SKA1Q96BD8 Y_RNA.69-201ENST00000362885 109 ntBASIC-3.08□□□□□ -2.9
SKA1Q96BD8 SNORD30.1-201ENST00000391309 70 ntBASIC-3.08□□□□□ -2.9
Retrieved 100 of 98,524 protein–RNA pairs in 172.5 ms