Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MIR4712-201ENST00000583750 82 ntBASIC-2.27□□□□□ -2.77
CCDC40Q4G0X9 RNU6-119P-201ENST00000364882 107 ntBASIC-2.28□□□□□ -2.77
CCDC40Q4G0X9 MIR664B-201ENST00000626756 61 ntBASIC-2.28□□□□□ -2.77
CCDC40Q4G0X9 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.29□□□□□ -2.78
CCDC40Q4G0X9 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.29□□□□□ -2.78
CCDC40Q4G0X9 MIR496-201ENST00000385226 102 ntBASIC-2.29□□□□□ -2.78
CCDC40Q4G0X9 RNU6-258P-201ENST00000390884 101 ntBASIC-2.29□□□□□ -2.78
CCDC40Q4G0X9 Y_RNA.291-201ENST00000364886 113 ntBASIC-2.3□□□□□ -2.78
CCDC40Q4G0X9 RNU6-172P-201ENST00000411000 93 ntBASIC-2.3□□□□□ -2.78
CCDC40Q4G0X9 RNU6-542P-201ENST00000516405 103 ntBASIC-2.3□□□□□ -2.78
CCDC40Q4G0X9 RNU6-563P-201ENST00000364872 108 ntBASIC-2.31□□□□□ -2.78
CCDC40Q4G0X9 RNU6-789P-201ENST00000517105 102 ntBASIC-2.31□□□□□ -2.78
CCDC40Q4G0X9 MTRNR2L9-201ENST00000622562 75 ntBASIC-2.32□□□□□ -2.78
CCDC40Q4G0X9 MIR7978-201ENST00000636158 59 ntBASIC-2.32□□□□□ -2.78
CCDC40Q4G0X9 RNU6-669P-201ENST00000365575 107 ntBASIC-2.33□□□□□ -2.78
CCDC40Q4G0X9 RNA5SP89-201ENST00000410300 108 ntBASIC-2.33□□□□□ -2.78
CCDC40Q4G0X9 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.33□□□□□ -2.78
CCDC40Q4G0X9 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.34□□□□□ -2.78
CCDC40Q4G0X9 SNORD63.2-201ENST00000516303 64 ntBASIC-2.34□□□□□ -2.78
CCDC40Q4G0X9 RNU6-980P-201ENST00000516925 103 ntBASIC-2.34□□□□□ -2.78
CCDC40Q4G0X9 RNU6-242P-201ENST00000384359 107 ntBASIC-2.35□□□□□ -2.79
CCDC40Q4G0X9 MIR579-201ENST00000385221 98 ntBASIC-2.35□□□□□ -2.79
CCDC40Q4G0X9 MIR125B1-201ENST00000385236 88 ntBASIC-2.35□□□□□ -2.79
CCDC40Q4G0X9 RNU6-92P-201ENST00000605893 104 ntBASIC-2.35□□□□□ -2.79
CCDC40Q4G0X9 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.36□□□□□ -2.79
CCDC40Q4G0X9 SNORD115-31-201ENST00000365318 82 ntBASIC-2.36□□□□□ -2.79
CCDC40Q4G0X9 Y_RNA.94-201ENST00000363068 106 ntBASIC-2.37□□□□□ -2.79
CCDC40Q4G0X9 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.37□□□□□ -2.79
CCDC40Q4G0X9 RNU6-841P-201ENST00000383872 107 ntBASIC-2.37□□□□□ -2.79
CCDC40Q4G0X9 RNU6-44P-201ENST00000384045 107 ntBASIC-2.37□□□□□ -2.79
CCDC40Q4G0X9 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.37□□□□□ -2.79
CCDC40Q4G0X9 MIR3139-201ENST00000579145 76 ntBASIC-2.37□□□□□ -2.79
CCDC40Q4G0X9 MIR3123-201ENST00000583417 75 ntBASIC-2.37□□□□□ -2.79
CCDC40Q4G0X9 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.37□□□□□ -2.79
CCDC40Q4G0X9 RNU6-523P-201ENST00000516304 54 ntBASIC-2.38□□□□□ -2.79
CCDC40Q4G0X9 RNU6-687P-201ENST00000516443 89 ntBASIC-2.38□□□□□ -2.79
CCDC40Q4G0X9 MIR548AI-201ENST00000579940 88 ntBASIC-2.38□□□□□ -2.79
CCDC40Q4G0X9 RNU7-160P-201ENST00000516660 62 ntBASIC-2.39□□□□□ -2.79
CCDC40Q4G0X9 MIR4666B-201ENST00000578142 81 ntBASIC-2.39□□□□□ -2.79
CCDC40Q4G0X9 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.4□□□□□ -2.79
CCDC40Q4G0X9 RNU6-1276P-201ENST00000365372 104 ntBASIC-2.4□□□□□ -2.79
CCDC40Q4G0X9 MIR3134-201ENST00000579433 74 ntBASIC-2.4□□□□□ -2.79
CCDC40Q4G0X9 MIR450A2-201ENST00000385022 100 ntBASIC-2.41□□□□□ -2.8
CCDC40Q4G0X9 AL603908.1-201ENST00000406098 201 ntBASIC-2.41□□□□□ -2.8
CCDC40Q4G0X9 RNY4P30-201ENST00000410216 95 ntBASIC-2.41□□□□□ -2.8
CCDC40Q4G0X9 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.43□□□□□ -2.8
CCDC40Q4G0X9 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.43□□□□□ -2.8
CCDC40Q4G0X9 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-2.43□□□□□ -2.8
CCDC40Q4G0X9 Y_RNA.788-201ENST00000622394 112 ntBASIC-2.43□□□□□ -2.8
CCDC40Q4G0X9 RNA5SP405-201ENST00000363059 114 ntBASIC-2.44□□□□□ -2.8
CCDC40Q4G0X9 RNU6-411P-201ENST00000384451 107 ntBASIC-2.44□□□□□ -2.8
CCDC40Q4G0X9 AC005520.4-201ENST00000604337 90 ntBASIC-2.44□□□□□ -2.8
CCDC40Q4G0X9 AC013734.1-201ENST00000619329 111 ntBASIC-2.44□□□□□ -2.8
CCDC40Q4G0X9 MIR494-201ENST00000349529 81 ntBASIC-2.45□□□□□ -2.8
CCDC40Q4G0X9 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.45□□□□□ -2.8
CCDC40Q4G0X9 Y_RNA.694-201ENST00000516677 117 ntBASIC-2.45□□□□□ -2.8
CCDC40Q4G0X9 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.45□□□□□ -2.8
CCDC40Q4G0X9 MIR7110-201ENST00000612638 86 ntBASIC-2.45□□□□□ -2.8
CCDC40Q4G0X9 MT-TM-201ENST00000387377 68 ntBASIC-2.46□□□□□ -2.8
CCDC40Q4G0X9 MIR548AM-201ENST00000584298 74 ntBASIC-2.46□□□□□ -2.8
CCDC40Q4G0X9 SNORD60.1-201ENST00000362451 73 ntBASIC-2.47□□□□□ -2.8
CCDC40Q4G0X9 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.48□□□□□ -2.81
CCDC40Q4G0X9 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.48□□□□□ -2.81
CCDC40Q4G0X9 Y_RNA.139-201ENST00000363464 102 ntBASIC-2.49□□□□□ -2.81
CCDC40Q4G0X9 RNU6-153P-201ENST00000364422 104 ntBASIC-2.49□□□□□ -2.81
CCDC40Q4G0X9 RNU6-828P-201ENST00000364876 107 ntBASIC-2.49□□□□□ -2.81
CCDC40Q4G0X9 RNU6-406P-201ENST00000516470 107 ntBASIC-2.49□□□□□ -2.81
CCDC40Q4G0X9 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.49□□□□□ -2.81
CCDC40Q4G0X9 Y_RNA.69-201ENST00000362885 109 ntBASIC-2.5□□□□□ -2.81
CCDC40Q4G0X9 U7.4-201ENST00000614961 63 ntBASIC-2.5□□□□□ -2.81
CCDC40Q4G0X9 RNU6-294P-201ENST00000364999 102 ntBASIC-2.51□□□□□ -2.81
CCDC40Q4G0X9 RNU6-974P-201ENST00000384099 108 ntBASIC-2.51□□□□□ -2.81
CCDC40Q4G0X9 RNU6-820P-201ENST00000384273 107 ntBASIC-2.51□□□□□ -2.81
CCDC40Q4G0X9 RNY3P8-201ENST00000411366 126 ntBASIC-2.51□□□□□ -2.81
CCDC40Q4G0X9 RNU6-194P-201ENST00000363862 105 ntBASIC-2.52□□□□□ -2.81
CCDC40Q4G0X9 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.52□□□□□ -2.81
CCDC40Q4G0X9 RNU6-520P-201ENST00000384717 104 ntBASIC-2.52□□□□□ -2.81
CCDC40Q4G0X9 U6.97-201ENST00000636904 101 ntBASIC-2.52□□□□□ -2.81
CCDC40Q4G0X9 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.53□□□□□ -2.81
CCDC40Q4G0X9 RNU6-231P-201ENST00000517122 103 ntBASIC-2.53□□□□□ -2.81
CCDC40Q4G0X9 SNORD18C-201ENST00000362704 69 ntBASIC-2.54□□□□□ -2.82
CCDC40Q4G0X9 RNU6-787P-201ENST00000384032 107 ntBASIC-2.54□□□□□ -2.82
CCDC40Q4G0X9 SNORD54-201ENST00000459159 67 ntBASIC-2.54□□□□□ -2.82
CCDC40Q4G0X9 RNU6-634P-201ENST00000459134 106 ntBASIC-2.55□□□□□ -2.82
CCDC40Q4G0X9 RNU6-810P-201ENST00000364001 107 ntBASIC-2.56□□□□□ -2.82
CCDC40Q4G0X9 SNORD60-201ENST00000383903 83 ntBASIC-2.56□□□□□ -2.82
CCDC40Q4G0X9 RNU4-88P-201ENST00000411220 86 ntBASIC-2.56□□□□□ -2.82
CCDC40Q4G0X9 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.57□□□□□ -2.82
CCDC40Q4G0X9 RNA5SP93-201ENST00000362525 114 ntBASIC-2.58□□□□□ -2.82
CCDC40Q4G0X9 RNU6-663P-201ENST00000391105 106 ntBASIC-2.58□□□□□ -2.82
CCDC40Q4G0X9 SNORD116.2-201ENST00000391251 93 ntBASIC-2.59□□□□□ -2.82
CCDC40Q4G0X9 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.59□□□□□ -2.82
CCDC40Q4G0X9 RNU6-122P-201ENST00000516818 107 ntBASIC-2.6□□□□□ -2.83
CCDC40Q4G0X9 SNORA25.5-201ENST00000363782 126 ntBASIC-2.61□□□□□ -2.83
CCDC40Q4G0X9 Y_RNA.369-201ENST00000365568 117 ntBASIC-2.61□□□□□ -2.83
CCDC40Q4G0X9 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.61□□□□□ -2.83
CCDC40Q4G0X9 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.61□□□□□ -2.83
CCDC40Q4G0X9 SNORA25.4-201ENST00000363666 124 ntBASIC-2.62□□□□□ -2.83
CCDC40Q4G0X9 SNORA40B-201ENST00000385573 128 ntBASIC-2.62□□□□□ -2.83
CCDC40Q4G0X9 RNU7-119P-201ENST00000459279 63 ntBASIC-2.63□□□□□ -2.83
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms