Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-1134P-201ENST00000365156 101 ntBASIC-4.44□□□□□ -3.12
CUX1P39880 SNORD42.2-201ENST00000365570 69 ntBASIC-4.44□□□□□ -3.12
CUX1P39880 Y_RNA.544-201ENST00000384650 113 ntBASIC-4.44□□□□□ -3.12
CUX1P39880 RNU6-380P-201ENST00000410207 107 ntBASIC-4.44□□□□□ -3.12
CUX1P39880 RNU6-267P-201ENST00000516714 103 ntBASIC-4.45□□□□□ -3.12
CUX1P39880 RNU7-119P-201ENST00000459279 63 ntBASIC-4.46□□□□□ -3.12
CUX1P39880 RNU4-71P-201ENST00000516258 113 ntBASIC-4.46□□□□□ -3.12
CUX1P39880 MIR548X2-201ENST00000579776 100 ntBASIC-4.46□□□□□ -3.12
CUX1P39880 Y_RNA.93-201ENST00000363066 109 ntBASIC-4.47□□□□□ -3.13
CUX1P39880 Y_RNA.165-201ENST00000363721 102 ntBASIC-4.47□□□□□ -3.13
CUX1P39880 RNU6-1043P-201ENST00000410355 99 ntBASIC-4.47□□□□□ -3.13
CUX1P39880 MIR4801-201ENST00000582704 82 ntBASIC-4.47□□□□□ -3.13
CUX1P39880 RNU6-379P-201ENST00000363813 104 ntBASIC-4.48□□□□□ -3.13
CUX1P39880 Y_RNA.20-201ENST00000362479 113 ntBASIC-4.49□□□□□ -3.13
CUX1P39880 RNY3P1-201ENST00000365085 102 ntBASIC-4.51□□□□□ -3.13
CUX1P39880 RNU6-772P-201ENST00000516042 105 ntBASIC-4.51□□□□□ -3.13
CUX1P39880 AC072026.1-201ENST00000605023 201 ntBASIC-4.51□□□□□ -3.13
CUX1P39880 RNU6-1107P-201ENST00000364817 104 ntBASIC-4.51□□□□□ -3.13
CUX1P39880 MIR4680-201ENST00000580906 66 ntBASIC-4.51□□□□□ -3.13
CUX1P39880 MIR4668-201ENST00000582284 70 ntBASIC-4.51□□□□□ -3.13
CUX1P39880 RNU6-776P-201ENST00000364403 104 ntBASIC-4.52□□□□□ -3.13
CUX1P39880 RNU6-1022P-201ENST00000365049 104 ntBASIC-4.52□□□□□ -3.13
CUX1P39880 Y_RNA.580-201ENST00000391004 95 ntBASIC-4.52□□□□□ -3.13
CUX1P39880 RNU6-985P-201ENST00000410182 104 ntBASIC-4.52□□□□□ -3.13
CUX1P39880 SCARNA15.1-201ENST00000516384 125 ntBASIC-4.52□□□□□ -3.13
CUX1P39880 Y_RNA.107-201ENST00000363190 121 ntBASIC-4.55□□□□□ -3.14
CUX1P39880 RNU6-474P-201ENST00000384243 107 ntBASIC-4.55□□□□□ -3.14
CUX1P39880 MIR590-201ENST00000385008 97 ntBASIC-4.55□□□□□ -3.14
CUX1P39880 RNU6-1137P-201ENST00000517073 99 ntBASIC-4.55□□□□□ -3.14
CUX1P39880 Y_RNA.200-201ENST00000364018 102 ntBASIC-4.56□□□□□ -3.14
CUX1P39880 Y_RNA.620-201ENST00000411009 88 ntBASIC-4.56□□□□□ -3.14
CUX1P39880 Y_RNA.318-201ENST00000365131 97 ntBASIC-4.56□□□□□ -3.14
CUX1P39880 RNU6-895P-201ENST00000384125 103 ntBASIC-4.56□□□□□ -3.14
CUX1P39880 SNORD116-22-201ENST00000384430 92 ntBASIC-4.58□□□□□ -3.14
CUX1P39880 MIR548H4-201ENST00000408689 111 ntBASIC-4.58□□□□□ -3.14
CUX1P39880 RNU6-635P-201ENST00000516651 102 ntBASIC-4.59□□□□□ -3.14
CUX1P39880 RNU6-122P-201ENST00000516818 107 ntBASIC-4.6□□□□□ -3.15
CUX1P39880 MIR154-201ENST00000385243 84 ntBASIC-4.61□□□□□ -3.15
CUX1P39880 Y_RNA.662-201ENST00000516028 97 ntBASIC-4.61□□□□□ -3.15
CUX1P39880 U6atac.1-201ENST00000616025 117 ntBASIC-4.62□□□□□ -3.15
CUX1P39880 Y_RNA.818-201ENST00000618813 71 ntBASIC-4.62□□□□□ -3.15
CUX1P39880 SNORA25.5-201ENST00000363782 126 ntBASIC-4.63□□□□□ -3.15
CUX1P39880 MIR1302-5-201ENST00000408164 150 ntBASIC-4.63□□□□□ -3.15
CUX1P39880 RNU6-916P-201ENST00000516088 109 ntBASIC-4.63□□□□□ -3.15
CUX1P39880 MIR548BB-201ENST00000626714 66 ntBASIC-4.64□□□□□ -3.15
CUX1P39880 Y_RNA.290-201ENST00000364879 114 ntBASIC-4.65□□□□□ -3.15
CUX1P39880 RNU6-979P-201ENST00000383896 107 ntBASIC-4.66□□□□□ -3.15
CUX1P39880 MIR3914-2-201ENST00000637339 95 ntBASIC-4.66□□□□□ -3.15
CUX1P39880 Y_RNA.722-201ENST00000517279 114 ntBASIC-4.67□□□□□ -3.16
CUX1P39880 Y_RNA.565-201ENST00000384719 101 ntBASIC-4.67□□□□□ -3.16
CUX1P39880 RNU6-109P-201ENST00000516364 107 ntBASIC-4.67□□□□□ -3.16
CUX1P39880 RNU6-70P-201ENST00000516438 60 ntBASIC-4.67□□□□□ -3.16
CUX1P39880 RNU6-184P-201ENST00000516514 107 ntBASIC-4.67□□□□□ -3.16
CUX1P39880 MIR548X-201ENST00000580069 75 ntBASIC-4.67□□□□□ -3.16
CUX1P39880 RNU6-497P-201ENST00000365316 104 ntBASIC-4.68□□□□□ -3.16
CUX1P39880 MIR569-201ENST00000385228 96 ntBASIC-4.68□□□□□ -3.16
CUX1P39880 Y_RNA.431-201ENST00000384086 102 ntBASIC-4.69□□□□□ -3.16
CUX1P39880 RNU6-394P-201ENST00000410735 107 ntBASIC-4.69□□□□□ -3.16
CUX1P39880 MTND4LP9-201ENST00000427694 174 ntBASIC-4.7□□□□□ -3.16
CUX1P39880 RNU7-107P-201ENST00000459121 61 ntBASIC-4.7□□□□□ -3.16
CUX1P39880 RNU6-1008P-201ENST00000384160 104 ntBASIC-4.71□□□□□ -3.16
CUX1P39880 RNU6-1326P-201ENST00000391262 107 ntBASIC-4.71□□□□□ -3.16
CUX1P39880 AC006160.2-201ENST00000637708 154 ntBASIC-4.71□□□□□ -3.16
CUX1P39880 SNORA19-201ENST00000384737 128 ntBASIC-4.72□□□□□ -3.17
CUX1P39880 Y_RNA.611-201ENST00000410682 108 ntBASIC-4.72□□□□□ -3.17
CUX1P39880 RNU6-219P-201ENST00000364728 107 ntBASIC-4.73□□□□□ -3.17
CUX1P39880 U6.95-201ENST00000636931 70 ntBASIC-4.73□□□□□ -3.17
CUX1P39880 Y_RNA.345-201ENST00000365384 92 ntBASIC-4.74□□□□□ -3.17
CUX1P39880 Y_RNA.356-201ENST00000365475 113 ntBASIC-4.74□□□□□ -3.17
CUX1P39880 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC-4.74□□□□□ -3.17
CUX1P39880 SNORD33.1-201ENST00000516213 88 ntBASIC-4.74□□□□□ -3.17
CUX1P39880 RNU6-111P-201ENST00000517179 105 ntBASIC-4.74□□□□□ -3.17
CUX1P39880 RNU6-1255P-201ENST00000363434 112 ntBASIC-4.75□□□□□ -3.17
CUX1P39880 AC134503.1-201ENST00000633048 54 ntBASIC-4.75□□□□□ -3.17
CUX1P39880 MIR2052-201ENST00000636055 55 ntBASIC-4.75□□□□□ -3.17
CUX1P39880 RNU6-411P-201ENST00000384451 107 ntBASIC-4.76□□□□□ -3.17
CUX1P39880 Y_RNA.712-201ENST00000517011 92 ntBASIC-4.76□□□□□ -3.17
CUX1P39880 SNORD116-18-201ENST00000383961 92 ntBASIC-4.77□□□□□ -3.17
CUX1P39880 AL589823.1-201ENST00000429577 183 ntBASIC-4.77□□□□□ -3.17
CUX1P39880 Y_RNA.15-201ENST00000362420 102 ntBASIC-4.77□□□□□ -3.17
CUX1P39880 RNU6-797P-201ENST00000363101 109 ntBASIC-4.77□□□□□ -3.17
CUX1P39880 MIR3128-201ENST00000581957 66 ntBASIC-4.77□□□□□ -3.17
CUX1P39880 MIR3938-201ENST00000582157 103 ntBASIC-4.77□□□□□ -3.17
CUX1P39880 MIR4795-201ENST00000584182 89 ntBASIC-4.77□□□□□ -3.17
CUX1P39880 Y_RNA.574-201ENST00000384766 95 ntBASIC-4.78□□□□□ -3.17
CUX1P39880 RNU6-315P-201ENST00000362666 107 ntBASIC-4.79□□□□□ -3.18
CUX1P39880 SNORD116-21-201ENST00000384507 92 ntBASIC-4.79□□□□□ -3.18
CUX1P39880 Y_RNA.406-201ENST00000383984 100 ntBASIC-4.8□□□□□ -3.18
CUX1P39880 SNORA40-201ENST00000388090 126 ntBASIC-4.81□□□□□ -3.18
CUX1P39880 Y_RNA.720-201ENST00000517166 92 ntBASIC-4.81□□□□□ -3.18
CUX1P39880 SNORA20.1-201ENST00000364790 130 ntBASIC-4.82□□□□□ -3.18
CUX1P39880 Y_RNA.350-201ENST00000365409 98 ntBASIC-4.82□□□□□ -3.18
CUX1P39880 RNU6-875P-201ENST00000516488 106 ntBASIC-4.82□□□□□ -3.18
CUX1P39880 RNU7-120P-201ENST00000459334 63 ntBASIC-4.82□□□□□ -3.18
CUX1P39880 RNU6-426P-201ENST00000516464 97 ntBASIC-4.82□□□□□ -3.18
CUX1P39880 AC004792.1-201ENST00000614523 137 ntBASIC-4.82□□□□□ -3.18
CUX1P39880 AL117187.1-201ENST00000555482 181 ntBASIC-4.83□□□□□ -3.18
CUX1P39880 RNU6-940P-201ENST00000363433 104 ntBASIC-4.84□□□□□ -3.18
CUX1P39880 RNU6-1024P-201ENST00000384199 107 ntBASIC-4.84□□□□□ -3.18
CUX1P39880 Y_RNA.607-201ENST00000410597 98 ntBASIC-4.85□□□□□ -3.19
Retrieved 100 of 98,524 protein–RNA pairs in 173.6 ms