Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.27□□□□□ -2.61
HOXC11O43248 U6.111-201ENST00000636093 83 ntBASIC-1.27□□□□□ -2.61
HOXC11O43248 SNORA25.5-201ENST00000363782 126 ntBASIC-1.28□□□□□ -2.61
HOXC11O43248 MIR6738-201ENST00000619620 64 ntBASIC-1.28□□□□□ -2.61
HOXC11O43248 RNA5SP192-201ENST00000364404 120 ntBASIC-1.29□□□□□ -2.62
HOXC11O43248 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.29□□□□□ -2.62
HOXC11O43248 MIR8485-201ENST00000401372 91 ntBASIC-1.29□□□□□ -2.62
HOXC11O43248 AC018880.2-201ENST00000414265 201 ntBASIC-1.29□□□□□ -2.62
HOXC11O43248 RNU6-539P-201ENST00000516665 103 ntBASIC-1.29□□□□□ -2.62
HOXC11O43248 MIR587-201ENST00000384845 96 ntBASIC-1.3□□□□□ -2.62
HOXC11O43248 MIR125B1-201ENST00000385236 88 ntBASIC-1.3□□□□□ -2.62
HOXC11O43248 RNU6-776P-201ENST00000364403 104 ntBASIC-1.31□□□□□ -2.62
HOXC11O43248 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.31□□□□□ -2.62
HOXC11O43248 RNU6-669P-201ENST00000365575 107 ntBASIC-1.31□□□□□ -2.62
HOXC11O43248 SNORD63.2-201ENST00000516303 64 ntBASIC-1.31□□□□□ -2.62
HOXC11O43248 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.31□□□□□ -2.62
HOXC11O43248 RNU6-122P-201ENST00000516818 107 ntBASIC-1.31□□□□□ -2.62
HOXC11O43248 RNU6-231P-201ENST00000517122 103 ntBASIC-1.31□□□□□ -2.62
HOXC11O43248 MIR4511-201ENST00000582784 87 ntBASIC-1.31□□□□□ -2.62
HOXC11O43248 MIR7110-201ENST00000612638 86 ntBASIC-1.31□□□□□ -2.62
HOXC11O43248 MIR4662A-201ENST00000637499 67 ntBASIC-1.31□□□□□ -2.62
HOXC11O43248 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.32□□□□□ -2.62
HOXC11O43248 MIR23C-201ENST00000579846 100 ntBASIC-1.32□□□□□ -2.62
HOXC11O43248 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.34□□□□□ -2.62
HOXC11O43248 RNU6-10P-201ENST00000384036 107 ntBASIC-1.34□□□□□ -2.62
HOXC11O43248 AC103706.3-201ENST00000636297 85 ntBASIC-1.34□□□□□ -2.62
HOXC11O43248 RNU6-79P-201ENST00000362511 107 ntBASIC-1.35□□□□□ -2.63
HOXC11O43248 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.35□□□□□ -2.63
HOXC11O43248 SNORD116.2-201ENST00000391251 93 ntBASIC-1.35□□□□□ -2.63
HOXC11O43248 RNU7-160P-201ENST00000516660 62 ntBASIC-1.35□□□□□ -2.63
HOXC11O43248 RNU6-810P-201ENST00000364001 107 ntBASIC-1.36□□□□□ -2.63
HOXC11O43248 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.36□□□□□ -2.63
HOXC11O43248 RNU6-800P-201ENST00000384473 103 ntBASIC-1.36□□□□□ -2.63
HOXC11O43248 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.37□□□□□ -2.63
HOXC11O43248 SNORA27.2-201ENST00000363365 126 ntBASIC-1.37□□□□□ -2.63
HOXC11O43248 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.37□□□□□ -2.63
HOXC11O43248 RNU6-974P-201ENST00000384099 108 ntBASIC-1.37□□□□□ -2.63
HOXC11O43248 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.38□□□□□ -2.63
HOXC11O43248 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.38□□□□□ -2.63
HOXC11O43248 AC120024.2-201ENST00000576526 175 ntBASIC-1.38□□□□□ -2.63
HOXC11O43248 MIR6502-201ENST00000617296 76 ntBASIC-1.38□□□□□ -2.63
HOXC11O43248 AC138207.3-201ENST00000585289 166 ntBASIC-1.39□□□□□ -2.63
HOXC11O43248 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.39□□□□□ -2.63
HOXC11O43248 RNU6-940P-201ENST00000363433 104 ntBASIC-1.4□□□□□ -2.63
HOXC11O43248 RNU6-563P-201ENST00000364872 108 ntBASIC-1.4□□□□□ -2.63
HOXC11O43248 RNU6-400P-201ENST00000391173 106 ntBASIC-1.4□□□□□ -2.63
HOXC11O43248 RNU6-706P-201ENST00000517229 104 ntBASIC-1.4□□□□□ -2.63
HOXC11O43248 MIR3165-201ENST00000579874 75 ntBASIC-1.4□□□□□ -2.63
HOXC11O43248 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.41□□□□□ -2.64
HOXC11O43248 SNORA40B-201ENST00000385573 128 ntBASIC-1.41□□□□□ -2.64
HOXC11O43248 MIR1468-201ENST00000410600 86 ntBASIC-1.41□□□□□ -2.64
HOXC11O43248 RNU6-828P-201ENST00000364876 107 ntBASIC-1.42□□□□□ -2.64
HOXC11O43248 SNORA40.16-201ENST00000517238 121 ntBASIC-1.42□□□□□ -2.64
HOXC11O43248 RNU7-119P-201ENST00000459279 63 ntBASIC-1.43□□□□□ -2.64
HOXC11O43248 MIR4520-1-201ENST00000582609 70 ntBASIC-1.43□□□□□ -2.64
HOXC11O43248 SNX3P1X-201ENST00000414887 175 ntBASIC-1.44□□□□□ -2.64
HOXC11O43248 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.45□□□□□ -2.64
HOXC11O43248 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.45□□□□□ -2.64
HOXC11O43248 MIR466-201ENST00000580653 84 ntBASIC-1.45□□□□□ -2.64
HOXC11O43248 RNY3P8-201ENST00000411366 126 ntBASIC-1.46□□□□□ -2.64
HOXC11O43248 AC110620.1-201ENST00000416042 228 ntBASIC-1.46□□□□□ -2.64
HOXC11O43248 MIR3938-201ENST00000582157 103 ntBASIC-1.46□□□□□ -2.64
HOXC11O43248 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.47□□□□□ -2.64
HOXC11O43248 AC114801.3-201ENST00000510231 177 ntBASIC-1.48□□□□□ -2.65
HOXC11O43248 AC013734.1-201ENST00000619329 111 ntBASIC-1.48□□□□□ -2.65
HOXC11O43248 SNORA72.7-201ENST00000516349 94 ntBASIC-1.49□□□□□ -2.65
HOXC11O43248 RNU6-520P-201ENST00000384717 104 ntBASIC-1.5□□□□□ -2.65
HOXC11O43248 MIR3115-201ENST00000577915 68 ntBASIC-1.5□□□□□ -2.65
HOXC11O43248 MIR5591-201ENST00000578248 65 ntBASIC-1.5□□□□□ -2.65
HOXC11O43248 MIR4320-201ENST00000636981 65 ntBASIC-1.5□□□□□ -2.65
HOXC11O43248 RNU6-471P-201ENST00000383944 106 ntBASIC-1.51□□□□□ -2.65
HOXC11O43248 HLA-S-202ENST00000425174 53 ntBASIC-1.51□□□□□ -2.65
HOXC11O43248 RNU6-695P-201ENST00000391157 104 ntBASIC-1.52□□□□□ -2.65
HOXC11O43248 MIR4770-201ENST00000579149 58 ntBASIC-1.52□□□□□ -2.65
HOXC11O43248 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.54□□□□□ -2.66
HOXC11O43248 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.54□□□□□ -2.66
HOXC11O43248 U6.97-201ENST00000636904 101 ntBASIC-1.55□□□□□ -2.66
HOXC11O43248 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.56□□□□□ -2.66
HOXC11O43248 MIR198-201ENST00000637333 62 ntBASIC-1.57□□□□□ -2.66
HOXC11O43248 MIR202-201ENST00000362219 110 ntBASIC-1.58□□□□□ -2.66
HOXC11O43248 RNA5SP86-201ENST00000390869 98 ntBASIC-1.58□□□□□ -2.66
HOXC11O43248 AL451105.1-201ENST00000450005 189 ntBASIC-1.58□□□□□ -2.66
HOXC11O43248 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.6□□□□□ -2.67
HOXC11O43248 RNU6-530P-201ENST00000391180 107 ntBASIC-1.6□□□□□ -2.67
HOXC11O43248 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.6□□□□□ -2.67
HOXC11O43248 RNU6-638P-201ENST00000516582 104 ntBASIC-1.6□□□□□ -2.67
HOXC11O43248 MIR3123-201ENST00000583417 75 ntBASIC-1.6□□□□□ -2.67
HOXC11O43248 SNORD45.2-201ENST00000363552 72 ntBASIC-1.61□□□□□ -2.67
HOXC11O43248 MIR548H1-201ENST00000408610 102 ntBASIC-1.61□□□□□ -2.67
HOXC11O43248 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.62□□□□□ -2.67
HOXC11O43248 RNU6-361P-201ENST00000364454 107 ntBASIC-1.62□□□□□ -2.67
HOXC11O43248 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.62□□□□□ -2.67
HOXC11O43248 SNORD60-201ENST00000383903 83 ntBASIC-1.62□□□□□ -2.67
HOXC11O43248 RNU6-419P-201ENST00000517030 63 ntBASIC-1.62□□□□□ -2.67
HOXC11O43248 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.64□□□□□ -2.67
HOXC11O43248 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.64□□□□□ -2.67
HOXC11O43248 SNORA17.4-201ENST00000391287 132 ntBASIC-1.64□□□□□ -2.67
HOXC11O43248 MIR548N-201ENST00000408742 75 ntBASIC-1.64□□□□□ -2.67
HOXC11O43248 SNORD18C-201ENST00000362704 69 ntBASIC-1.65□□□□□ -2.67
HOXC11O43248 MIR581-201ENST00000384895 96 ntBASIC-1.65□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 1063 ms