Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MIR581-201ENST00000384895 96 ntBASIC-1.32□□□□□ -2.62
LMX1AQ8TE12 MIR548W-201ENST00000581970 74 ntBASIC-1.32□□□□□ -2.62
LMX1AQ8TE12 AL365222.1-201ENST00000614661 98 ntBASIC-1.32□□□□□ -2.62
LMX1AQ8TE12 RNU6-841P-201ENST00000383872 107 ntBASIC-1.33□□□□□ -2.62
LMX1AQ8TE12 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.33□□□□□ -2.62
LMX1AQ8TE12 SNORD116-24-201ENST00000384549 92 ntBASIC-1.33□□□□□ -2.62
LMX1AQ8TE12 MIR548AA1-201ENST00000384971 97 ntBASIC-1.33□□□□□ -2.62
LMX1AQ8TE12 MIR125B1-201ENST00000385236 88 ntBASIC-1.33□□□□□ -2.62
LMX1AQ8TE12 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.33□□□□□ -2.62
LMX1AQ8TE12 RNU4-88P-201ENST00000411220 86 ntBASIC-1.33□□□□□ -2.62
LMX1AQ8TE12 MALAT1.1-201ENST00000618249 95 ntBASIC-1.33□□□□□ -2.62
LMX1AQ8TE12 MIR664B-201ENST00000626756 61 ntBASIC-1.33□□□□□ -2.62
LMX1AQ8TE12 U6.97-201ENST00000636904 101 ntBASIC-1.33□□□□□ -2.62
LMX1AQ8TE12 MIR365A-201ENST00000362260 87 ntBASIC-1.34□□□□□ -2.62
LMX1AQ8TE12 SNORD115-37-201ENST00000363768 82 ntBASIC-1.34□□□□□ -2.62
LMX1AQ8TE12 SNORD63.2-201ENST00000516303 64 ntBASIC-1.34□□□□□ -2.62
LMX1AQ8TE12 AP001318.4-201ENST00000616637 121 ntBASIC-1.34□□□□□ -2.62
LMX1AQ8TE12 U4.2-201ENST00000618561 85 ntBASIC-1.34□□□□□ -2.62
LMX1AQ8TE12 AC006160.2-201ENST00000637708 154 ntBASIC-1.34□□□□□ -2.62
LMX1AQ8TE12 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.35□□□□□ -2.63
LMX1AQ8TE12 RNU6-129P-201ENST00000391022 107 ntBASIC-1.35□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.35□□□□□ -2.63
LMX1AQ8TE12 RNU6-172P-201ENST00000411000 93 ntBASIC-1.35□□□□□ -2.63
LMX1AQ8TE12 snoU13.10-201ENST00000459301 103 ntBASIC-1.35□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.35□□□□□ -2.63
LMX1AQ8TE12 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.36□□□□□ -2.63
LMX1AQ8TE12 RNU6-523P-201ENST00000516304 54 ntBASIC-1.36□□□□□ -2.63
LMX1AQ8TE12 RNU6-980P-201ENST00000516925 103 ntBASIC-1.36□□□□□ -2.63
LMX1AQ8TE12 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.36□□□□□ -2.63
LMX1AQ8TE12 MIR3133-201ENST00000583157 78 ntBASIC-1.36□□□□□ -2.63
LMX1AQ8TE12 RNU6-247P-201ENST00000362636 107 ntBASIC-1.37□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.73-201ENST00000362910 113 ntBASIC-1.37□□□□□ -2.63
LMX1AQ8TE12 RNU6-640P-201ENST00000363693 105 ntBASIC-1.37□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.37□□□□□ -2.63
LMX1AQ8TE12 RNU6-675P-201ENST00000384236 104 ntBASIC-1.37□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.37□□□□□ -2.63
LMX1AQ8TE12 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.37□□□□□ -2.63
LMX1AQ8TE12 MIR429-201ENST00000362106 83 ntBASIC-1.38□□□□□ -2.63
LMX1AQ8TE12 SNORD116-22-201ENST00000384430 92 ntBASIC-1.38□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.38□□□□□ -2.63
LMX1AQ8TE12 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.38□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.38□□□□□ -2.63
LMX1AQ8TE12 RNA5SP215-201ENST00000363440 122 ntBASIC-1.39□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.39□□□□□ -2.63
LMX1AQ8TE12 RNU6-668P-201ENST00000364180 107 ntBASIC-1.39□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.39□□□□□ -2.63
LMX1AQ8TE12 RNU6-959P-201ENST00000384671 107 ntBASIC-1.39□□□□□ -2.63
LMX1AQ8TE12 MIR23C-201ENST00000579846 100 ntBASIC-1.39□□□□□ -2.63
LMX1AQ8TE12 MIR4441-201ENST00000582623 100 ntBASIC-1.39□□□□□ -2.63
LMX1AQ8TE12 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.39□□□□□ -2.63
LMX1AQ8TE12 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.39□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.39□□□□□ -2.63
LMX1AQ8TE12 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.4□□□□□ -2.63
LMX1AQ8TE12 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.4□□□□□ -2.63
LMX1AQ8TE12 AC090425.1-201ENST00000610007 140 ntBASIC-1.4□□□□□ -2.63
LMX1AQ8TE12 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.4□□□□□ -2.63
LMX1AQ8TE12 SNORA27.2-201ENST00000363365 126 ntBASIC-1.41□□□□□ -2.64
LMX1AQ8TE12 RNU6-995P-201ENST00000391244 107 ntBASIC-1.41□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.593-201ENST00000410292 98 ntBASIC-1.41□□□□□ -2.64
LMX1AQ8TE12 MTND4LP1-201ENST00000446263 157 ntBASIC-1.41□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.41□□□□□ -2.64
LMX1AQ8TE12 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.42□□□□□ -2.64
LMX1AQ8TE12 RNY4P18-201ENST00000391107 89 ntBASIC-1.42□□□□□ -2.64
LMX1AQ8TE12 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.42□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.43□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.43□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.43□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.43□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.43□□□□□ -2.64
LMX1AQ8TE12 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.43□□□□□ -2.64
LMX1AQ8TE12 SNORA63.4-201ENST00000362763 126 ntBASIC-1.44□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.44□□□□□ -2.64
LMX1AQ8TE12 RNA5SP405-201ENST00000363059 114 ntBASIC-1.44□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.316-201ENST00000365118 111 ntBASIC-1.44□□□□□ -2.64
LMX1AQ8TE12 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.44□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.703-201ENST00000516846 111 ntBASIC-1.44□□□□□ -2.64
LMX1AQ8TE12 RNU6-844P-201ENST00000517175 102 ntBASIC-1.44□□□□□ -2.64
LMX1AQ8TE12 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.45□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.45□□□□□ -2.64
LMX1AQ8TE12 SNORD114-3-201ENST00000364969 75 ntBASIC-1.45□□□□□ -2.64
LMX1AQ8TE12 MIR4719-201ENST00000585233 84 ntBASIC-1.45□□□□□ -2.64
LMX1AQ8TE12 MIR8053-201ENST00000613344 75 ntBASIC-1.45□□□□□ -2.64
LMX1AQ8TE12 MIR1297-201ENST00000637311 77 ntBASIC-1.45□□□□□ -2.64
LMX1AQ8TE12 MIR202-201ENST00000362219 110 ntBASIC-1.46□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.46□□□□□ -2.64
LMX1AQ8TE12 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.46□□□□□ -2.64
LMX1AQ8TE12 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.46□□□□□ -2.64
LMX1AQ8TE12 AL031737.1-201ENST00000450125 223 ntBASIC-1.46□□□□□ -2.64
LMX1AQ8TE12 RNU6-68P-201ENST00000516576 104 ntBASIC-1.46□□□□□ -2.64
LMX1AQ8TE12 RNU6-49P-201ENST00000384256 107 ntBASIC-1.47□□□□□ -2.64
LMX1AQ8TE12 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.47□□□□□ -2.64
LMX1AQ8TE12 AC008267.6-201ENST00000441664 139 ntBASIC-1.47□□□□□ -2.64
LMX1AQ8TE12 SNORA40.13-201ENST00000516379 120 ntBASIC-1.47□□□□□ -2.64
LMX1AQ8TE12 MIR3134-201ENST00000579433 74 ntBASIC-1.47□□□□□ -2.64
LMX1AQ8TE12 MIR548AI-201ENST00000579940 88 ntBASIC-1.47□□□□□ -2.64
LMX1AQ8TE12 MIR4712-201ENST00000583750 82 ntBASIC-1.47□□□□□ -2.64
LMX1AQ8TE12 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.47□□□□□ -2.64
LMX1AQ8TE12 RNU6-315P-201ENST00000362666 107 ntBASIC-1.48□□□□□ -2.65
LMX1AQ8TE12 RNU6-810P-201ENST00000364001 107 ntBASIC-1.48□□□□□ -2.65
LMX1AQ8TE12 RNU6-81P-201ENST00000365608 104 ntBASIC-1.48□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms